g.barbadense_cottongen_reftransV1_0097367, g.barbadense_cottongen_reftransV1_0097367 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAB (Chaperone protein DnaJ OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=dnaJ PE=3 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.057e-7 Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3 Query: 819 DWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGAG-AFKLLLEAWSLLSDKARRFSYDQ 1004 D+Y VLG+ A +D I K Y KL+ HPD NK GA FK + EA+ +LSD +R SYDQ Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67
BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAW (Chaperone protein DnaJ OS=Staphylococcus aureus (strain MW2) GN=dnaJ PE=3 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.104e-7 Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3 Query: 819 DWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGAG-AFKLLLEAWSLLSDKARRFSYDQ 1004 D+Y VLG+ A +D I K Y KL+ HPD NK GA FK + EA+ +LSD +R SYDQ Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67
BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAT (Chaperone protein DnaJ OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=dnaJ PE=3 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.104e-7 Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3 Query: 819 DWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGAG-AFKLLLEAWSLLSDKARRFSYDQ 1004 D+Y VLG+ A +D I K Y KL+ HPD NK GA FK + EA+ +LSD +R SYDQ Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67
BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAS (Chaperone protein DnaJ OS=Staphylococcus aureus (strain MSSA476) GN=dnaJ PE=3 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.104e-7 Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3 Query: 819 DWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGAG-AFKLLLEAWSLLSDKARRFSYDQ 1004 D+Y VLG+ A +D I K Y KL+ HPD NK GA FK + EA+ +LSD +R SYDQ Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67
BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAN (Chaperone protein DnaJ OS=Staphylococcus aureus (strain N315) GN=dnaJ PE=1 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.104e-7 Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3 Query: 819 DWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGAG-AFKLLLEAWSLLSDKARRFSYDQ 1004 D+Y VLG+ A +D I K Y KL+ HPD NK GA FK + EA+ +LSD +R SYDQ Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67
BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAM (Chaperone protein DnaJ OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=dnaJ PE=3 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.104e-7 Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3 Query: 819 DWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGAG-AFKLLLEAWSLLSDKARRFSYDQ 1004 D+Y VLG+ A +D I K Y KL+ HPD NK GA FK + EA+ +LSD +R SYDQ Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67
BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAE (Chaperone protein DnaJ OS=Staphylococcus aureus (strain Newman) GN=dnaJ PE=3 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.104e-7 Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3 Query: 819 DWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGAG-AFKLLLEAWSLLSDKARRFSYDQ 1004 D+Y VLG+ A +D I K Y KL+ HPD NK GA FK + EA+ +LSD +R SYDQ Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67
BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAC (Chaperone protein DnaJ OS=Staphylococcus aureus (strain COL) GN=dnaJ PE=3 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.104e-7 Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3 Query: 819 DWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGAG-AFKLLLEAWSLLSDKARRFSYDQ 1004 D+Y VLG+ A +D I K Y KL+ HPD NK GA FK + EA+ +LSD +R SYDQ Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67
BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Match: DNAJ_STAA9 (Chaperone protein DnaJ OS=Staphylococcus aureus (strain JH9) GN=dnaJ PE=3 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.104e-7 Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3 Query: 819 DWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGAG-AFKLLLEAWSLLSDKARRFSYDQ 1004 D+Y VLG+ A +D I K Y KL+ HPD NK GA FK + EA+ +LSD +R SYDQ Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67
BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Match: DNAJ_STAA8 (Chaperone protein DnaJ OS=Staphylococcus aureus (strain NCTC 8325) GN=dnaJ PE=3 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 1.104e-7 Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3 Query: 819 DWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGAG-AFKLLLEAWSLLSDKARRFSYDQ 1004 D+Y VLG+ A +D I K Y KL+ HPD NK GA FK + EA+ +LSD +R SYDQ Sbjct: 5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67
BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy TrEMBL
Match: U5FX41_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s10060g PE=4 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 2.533e-49 Identity = 103/210 (49.05%), Postives = 133/210 (63.33%), Query Frame = 3 Query: 639 MD*NKEVAIRGKEIAEK-----DVAGAKRFVLMAENLYPVLGGLPQLIVALDVYISADEKINGEVDWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGA-GAFKLLLEAWSLLSDKARRFSYDQKLNLRGSFTNVLHGKSSMATTSSNGFHNSYSVKNSNIGDQHGATYSNSAPP-CSTRTDTFWTTCSSCKMQFKYSRLCINLNL 1247 M+ NKE A R KEIAEK D+AGA+RF + A+NLYP L GLP+L+ ALDVY++AD + NG+VDWYRVL V+ AD+DTI +HY KLA ILHPD+NK GA GAFK++ EAW+LLSDK +R S+DQK N++G DQ A + APP ++ +TFWT C++CK QF+Y R +N NL Sbjct: 1 MEFNKEEASRVKEIAEKKFAERDIAGARRFAVKAQNLYPALDGLPRLLAALDVYMAADNRTNGDVDWYRVLDVESSADDDTIRRHYRKLALILHPDKNKATGADGAFKIVSEAWNLLSDKVKRISFDQKRNVKGM-------------------------------DQKSAVHPKPAPPHLFSKPNTFWTICNACKTQFEYLRTYLNHNL 179 HSP 2 Score: 105.531 bits (262), Expect = 4.261e-20 Identity = 59/113 (52.21%), Postives = 73/113 (64.60%), Query Frame = 3 Query: 1239 LNLPGLKTVFRRHSERSKTWAIPREEFFHFSHQVPSYLVTGQEGLKSCKGCLKLDPAATPSELLQVFTEAQVVIM----KRAREDVPFVDSKRSEEKELVENDQEMKPNTTKE 1565 + + G KTVFR+H + SKT IPREE F FSHQVPS L+TGQEG + KGC +LDPA+TP ELLQV T Q+ M ++ +E D K+S E+E VEN NT KE Sbjct: 607 VKVAGFKTVFRQHPDPSKTRTIPREEMFRFSHQVPSVLLTGQEGQYAPKGCWELDPASTPLELLQVLTGVQLDAMMETAEKDKEKYSSGDMKKSSEEEFVEN-----VNTVKE 714
BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy TrEMBL
Match: A0A0D2RZF1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G200900 PE=4 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 3.224e-49 Identity = 105/214 (49.07%), Postives = 145/214 (67.76%), Query Frame = 3 Query: 639 MD*NKEVAIRGKEIAE-----KDVAGAKRFVLMAENLYPVLGGLPQLIVALDVYISADEKINGEVDWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGA-GAFKLLLEAWSLLSDKARRFSYDQKLNLRGSFTNVLHGKSSMATT--SSNGFHNSYSVKNSNIGDQHGAT---YSNSAPPCSTRTDTFWTTCSSCKMQFKYSRLCINLNL 1247 M+ NK+ A R KEIAE KD AGAK+F + A+NLYP L G+ Q++ LDVYISA+ K +GE DWY VLGV YAD++ + K Y KLA +LHPD+NK GA GAFKL+ EAWSLLSD+A+R +Y+Q++NLRG+ H +S +++ +NG H+S S SN Q+G ++ APP + + +TFWT C+ CK Q++Y R+ +N L Sbjct: 1 MECNKDEAFRAKEIAERKVREKDFAGAKKFAMKAQNLYPGLDGITQMLTILDVYISAENKASGEADWYGVLGVTAYADDEVVRKQYRKLALMLHPDKNKLVGADGAFKLVSEAWSLLSDQAKRLAYNQRINLRGT-QQKFHTQSDVSSMPPGTNGSHSSSSNIKSNARTQNGNNRVGQASFAPPPNKKPETFWTVCNRCKTQYEYLRVYLNHTL 213 HSP 2 Score: 78.5666 bits (192), Expect = 8.780e-12 Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 3 Query: 1227 LCINLNLPGLKTVFRRHSERSKTWAIPREEFFHFSHQVPSYLVTGQEGLKSCKGCLKLDPAATPSELLQVFTEA 1448 L + + G +TVF + + + IP+EE F FSHQVP+YL+TGQE + GC +LDPAATP +LLQV EA Sbjct: 598 LVLLTKVAGFRTVFCKQMDPKEVRRIPKEEMFRFSHQVPNYLLTGQEADNAPAGCRELDPAATPLDLLQVINEA 671
BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy TrEMBL
Match: A0A0A0KXA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011640 PE=4 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 3.724e-49 Identity = 101/192 (52.60%), Postives = 130/192 (67.71%), Query Frame = 3 Query: 687 KDVAGAKRFVLMAENLYPVLGGLPQLIVALDVYISADEKINGEVDWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGA-GAFKLLLEAWSLLSDKARRFSYDQKLNLRGSFTNVLHGKSSMATTSS--NGFHN-SYSVKNSNIGDQHGATYSNSAPPCSTRT-DTFWTTCSSCKMQFKYSRLCINLNL 1247 KD+ GAK+F L A+NLYP L G+ Q++ LDVYISA+ KINGEVDWY +LGV P ADE+T+ KHY KLA ILHPD+NK GA GAFKL+ +AWSLLSDK+RR YDQK N GS + +++ S NGF+N + S SN+ Q A S+ + S + TFWT C CKMQ++Y R+ ++ NL Sbjct: 22 KDIVGAKKFALKAQNLYPGLEGISQMLATLDVYISAENKINGEVDWYAILGVNPRADEETVRKHYRKLALILHPDKNKSIGADGAFKLISQAWSLLSDKSRRVVYDQKRN--GSINKTISASRGTSSSPSGRNGFYNFTKSATTSNMKRQKSAPRSDHSSASSQKPRPTFWTVCHRCKMQYEYLRVYLHHNL 211 HSP 2 Score: 70.0922 bits (170), Expect = 4.450e-9 Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 3 Query: 1239 LNLPGLKTVFRRHSERSKTWAIPREEFFHFSHQVPSYLVTGQEGLKSCKGCLKLDPAATPSELLQVFTEAQVVIMK 1466 L + G K VF +H + ++ IP++E F FSH VPS L+TG+E + +GC +LDPAATP +LL + + I++ Sbjct: 647 LKVAGFKAVFHQHLDPNQVRRIPKDEIFRFSHLVPSRLLTGKEAPNAPRGCRELDPAATPIDLLHIIETPKEEIIE 722
BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy TrEMBL
Match: B9RAE6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1505850 PE=4 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 4.224e-49 Identity = 111/212 (52.36%), Postives = 137/212 (64.62%), Query Frame = 3 Query: 639 MD*NKEVAIRGKEIAEK-----DVAGAKRFVLMAENLYPVLGGLPQLIVALDVYISADEKINGEVDWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGA-GAFKLLLEAWSLLSDKARRFSYDQKLNLRG--SFTNVLHGKSSMATTSSNGFHNSYSVKNSNIGDQHGATYSNSAPPCS-TRTDTFWTTCSSCKMQFKYSRLCINLNL 1247 M+ NK+ A R KE+AEK DVAGAKRF L A NLYP L GL Q + LDVY+SA E+ NGE+DWY VLG++P D++TI K Y KLA ILHPD+NK GA GAFK+L EAW LLSDKA+R +YDQKLNL F N + S T NG HN ++ NS ++ A + S PP ++ TFWT C+ CK QF+Y +N NL Sbjct: 1 MECNKDDAFRAKEMAEKKFLESDVAGAKRFALKAHNLYPGLDGLSQFLATLDVYVSAKERRNGEIDWYGVLGIEPPTDDNTIRKQYRKLAIILHPDKNKSVGAEGAFKILSEAWGLLSDKAKRSAYDQKLNLCDYRKFPNYV----SAMPTGQNGLHNFFNNNNSTSTTRNSAMHPKSDPPSHFSKPRTFWTICNFCKTQFEYLNAYLNQNL 208 HSP 2 Score: 101.679 bits (252), Expect = 5.317e-19 Identity = 56/111 (50.45%), Postives = 70/111 (63.06%), Query Frame = 3 Query: 1239 LNLPGLKTVFRRHSERSKTWAIPREEFFHFSHQVPSYLVTGQEGLKSCKGCLKLDPAATPSELLQVFTEAQVVIMKRAREDV--PFVDSKRSEEKELVENDQEMKPNTTKE 1565 + + G KTVFRR + SK AIPREE F SHQVPSY +TGQEG + K C +LDPA+ P ELL+V TEAQV M E P D K+S++ + +EN + TTKE Sbjct: 640 VKVAGFKTVFRRDPDTSKIKAIPREELFRLSHQVPSYFLTGQEGHTAPKDCWELDPASMPMELLEVLTEAQVKEMVENAEKAKDPLADVKKSKKIQSIENGE-----TTKE 745
BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy TrEMBL
Match: V4VFJ7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030729mg PE=4 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 5.136e-49 Identity = 106/212 (50.00%), Postives = 137/212 (64.62%), Query Frame = 3 Query: 639 MD*NKEVAIRGKEIAEK-----DVAGAKRFVLMAENLYPVLGGLPQLIVALDVYISADEKINGEVDWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGA-GAFKLLLEAWSLLSDKARRFSYDQKLNLRGSFTNVLHGKSSMAT-TSSNGFHN--SYSVKNSNIGDQHGATYSNSAPPCSTRTDTFWTTCSSCKMQFKYSRLCINLNL 1247 M+ NK+ A R KEIAEK D GAK+F + A+NLYP L G+PQ+I LDVYISA+ KI GE DWY +LGV P AD++T+ K Y KLA +LHPD+NK GA GAFK + EAW LLSDKA+R YDQ+ N + +F V +T T++NGF+N S K S + G + S P + +TFWT C CKMQ++Y R+ +N NL Sbjct: 1 MECNKDEATRAKEIAEKKFTAKDFTGAKKFAVKAQNLYPGLEGIPQMIATLDVYISAENKIGGEADWYGILGVTPQADDETVKKQYRKLALMLHPDKNKSIGADGAFKFVSEAWILLSDKAKRAEYDQRRNGK-AFQKVSTASGGTSTATAANGFYNFTKPSAKASKSTPRSGHS---STPSHKLKPNTFWTVCHRCKMQYEYLRVYLNHNL 208 HSP 2 Score: 89.3521 bits (220), Expect = 4.969e-15 Identity = 47/98 (47.96%), Postives = 62/98 (63.27%), Query Frame = 3 Query: 1239 LNLPGLKTVFRRHSERSKTWAIPREEFFHFSHQVPSYLVTGQEGLKSCKGCLKLDPAATPSELLQVFTEA-QVVIMKRAREDVPFVDSKRSEEKELVE 1529 + + G KTVF +H + + IPREE F FSH VPSYL+TGQE + KGC +LDPAATP ELLQV T+ + I++ E++ VD+ K VE Sbjct: 657 VKVAGFKTVFHQHLDPREVRRIPREEMFRFSHHVPSYLLTGQEAPNAPKGCRELDPAATPVELLQVITDVKEEDILEERLEELNVVDNAERSTKGAVE 754 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
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BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0097367 ID=g.barbadense_cottongen_reftransV1_0097367; Name=g.barbadense_cottongen_reftransV1_0097367; organism=Gossypium barbadense; type=contig; length=2195bpback to top |