g.barbadense_cottongen_reftransV1_0097367, g.barbadense_cottongen_reftransV1_0097367 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0097367
Unique Name	g.barbadense_cottongen_reftransV1_0097367
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2195

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAB (Chaperone protein DnaJ OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.057e-7
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3

Query:  819 DWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGAG-AFKLLLEAWSLLSDKARRFSYDQ 1004
            D+Y VLG+   A +D I K Y KL+   HPD NK  GA   FK + EA+ +LSD  +R SYDQ
Sbjct:    5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67

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BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAW (Chaperone protein DnaJ OS=Staphylococcus aureus (strain MW2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.104e-7
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3

Query:  819 DWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGAG-AFKLLLEAWSLLSDKARRFSYDQ 1004
            D+Y VLG+   A +D I K Y KL+   HPD NK  GA   FK + EA+ +LSD  +R SYDQ
Sbjct:    5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67

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BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAT (Chaperone protein DnaJ OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.104e-7
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3

Query:  819 DWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGAG-AFKLLLEAWSLLSDKARRFSYDQ 1004
            D+Y VLG+   A +D I K Y KL+   HPD NK  GA   FK + EA+ +LSD  +R SYDQ
Sbjct:    5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67

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BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAS (Chaperone protein DnaJ OS=Staphylococcus aureus (strain MSSA476) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.104e-7
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3

Query:  819 DWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGAG-AFKLLLEAWSLLSDKARRFSYDQ 1004
            D+Y VLG+   A +D I K Y KL+   HPD NK  GA   FK + EA+ +LSD  +R SYDQ
Sbjct:    5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67

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BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAN (Chaperone protein DnaJ OS=Staphylococcus aureus (strain N315) GN=dnaJ PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.104e-7
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3

Query:  819 DWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGAG-AFKLLLEAWSLLSDKARRFSYDQ 1004
            D+Y VLG+   A +D I K Y KL+   HPD NK  GA   FK + EA+ +LSD  +R SYDQ
Sbjct:    5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67

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BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAM (Chaperone protein DnaJ OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.104e-7
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3

Query:  819 DWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGAG-AFKLLLEAWSLLSDKARRFSYDQ 1004
            D+Y VLG+   A +D I K Y KL+   HPD NK  GA   FK + EA+ +LSD  +R SYDQ
Sbjct:    5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67

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BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAE (Chaperone protein DnaJ OS=Staphylococcus aureus (strain Newman) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.104e-7
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3

Query:  819 DWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGAG-AFKLLLEAWSLLSDKARRFSYDQ 1004
            D+Y VLG+   A +D I K Y KL+   HPD NK  GA   FK + EA+ +LSD  +R SYDQ
Sbjct:    5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67

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BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAC (Chaperone protein DnaJ OS=Staphylococcus aureus (strain COL) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.104e-7
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3

Query:  819 DWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGAG-AFKLLLEAWSLLSDKARRFSYDQ 1004
            D+Y VLG+   A +D I K Y KL+   HPD NK  GA   FK + EA+ +LSD  +R SYDQ
Sbjct:    5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67

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BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Match: DNAJ_STAA9 (Chaperone protein DnaJ OS=Staphylococcus aureus (strain JH9) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.104e-7
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3

Query:  819 DWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGAG-AFKLLLEAWSLLSDKARRFSYDQ 1004
            D+Y VLG+   A +D I K Y KL+   HPD NK  GA   FK + EA+ +LSD  +R SYDQ
Sbjct:    5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67

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BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Match: DNAJ_STAA8 (Chaperone protein DnaJ OS=Staphylococcus aureus (strain NCTC 8325) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.104e-7
Identity = 31/63 (49.21%), Postives = 39/63 (61.90%), Query Frame = 3

Query:  819 DWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGAG-AFKLLLEAWSLLSDKARRFSYDQ 1004
            D+Y VLG+   A +D I K Y KL+   HPD NK  GA   FK + EA+ +LSD  +R SYDQ
Sbjct:    5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67

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BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy TrEMBL
Match: F6HGB5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g03760 PE=4 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.954e-51
Identity = 108/216 (50.00%), Postives = 141/216 (65.28%), Query Frame = 3

Query:  639 MD*NKEVAIRGKEIAEK-----DVAGAKRFVLMAENLYPVLGGLPQLIVALDVYISADEKINGEVDWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGA-GAFKLLLEAWSLLSDKARRFSYDQKLNLRGSFTNVL---HGKSSMATTSSNGFHNSYSVKNSNIGDQHGAT-YSNSAPPCST---RTDTFWTTCSSCKMQFKYSRLCINLNL 1247
            M+ NK+ A R KEIAEK     D+AGAK+  L A+NL+P L GLPQ++  LDV+ISA+ KINGE DWY +LGV P AD+DT+ K Y KLA +LHPD+NK  GA GAFKL+ EAWSLLSDK +R +YDQK N++     V     G SS A  ++NGF++    + +N       T    S+ P S    + +TFWT C  CKMQ++Y R+ +N NL
Sbjct:    1 MECNKDEATRAKEIAEKKFIARDIAGAKKLALKAQNLFPGLDGLPQMLATLDVHISAENKINGEADWYGILGVNPQADDDTVRKQYRKLALMLHPDKNKSIGADGAFKLISEAWSLLSDKTKRIAYDQKRNVKAGQQKVQPPSGGPSSSA--AANGFYSFTKSRTTNTKAHKNTTRMGPSSAPASAHKPKPNTFWTVCHRCKMQYEYLRIYLNHNL 214

HSP 2 Score: 96.6709 bits (239), Expect = 2.649e-17
Identity = 50/104 (48.08%), Postives = 67/104 (64.42%), Query Frame = 3

Query: 1239 LNLPGLKTVFRRHSERSKTWAIPREEFFHFSHQVPSYLVTGQEGLKSCKGCLKLDPAATPSELLQVFT---EAQVVIMKRAREDVPFVDSKRSEEKELVENDQE 1541
            + + G KTVF RH +  +   IPREE F FSH VPSYL+TGQE   + KGC +LDPAATP ELLQV T   E ++V   + RE+     + ++ EKE+ EN ++
Sbjct:  675 VKVAGFKTVFHRHLDPREVRRIPREEMFRFSHHVPSYLLTGQEAPSAPKGCRELDPAATPLELLQVITDVREEEIVENDKIREENIVNKTTKANEKEIEENSEK 778

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BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy TrEMBL
Match: B9RIK9_RICCO (Heat shock protein binding protein, putative OS=Ricinus communis GN=RCOM_1580150 PE=4 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 4.450e-51
Identity = 108/213 (50.70%), Postives = 146/213 (68.54%), Query Frame = 3

Query:  639 MD*NKEVAIRGKEIAEK-----DVAGAKRFVLMAENLYPVLGGLPQLIVALDVYISADEK-INGEVDWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGA-GAFKLLLEAWSLLSDKARRFSYDQKLNLRGSFTNV-LHGKSSMATTSSNGFHNSYSVKNSNIGDQHGATYSNSAPPCST--RTDTFWTTCSSCKMQFKYSRLCINLNL 1247
            M+ NK+ A+R KEIAE+     D AGAK+F L A++LYP L GL Q++V LDVY SA+++ I GEVD+Y VLGV P+AD++T+ K Y KLA +LHPD+NK  GA GAFKL+ EAWSLLSDKA+R +Y++KLN+ G   N+  H K   A  ++NGFHNS S   S+   Q+    +   P  S+  + DTFWT C+ CK Q++Y R+ +N  L
Sbjct:    1 MECNKDEAVRAKEIAERKFTDRDFAGAKKFALKAQHLYPELDGLSQMLVTLDVYASAEKRTITGEVDYYCVLGVSPWADDETVKKQYRKLALMLHPDKNKSLGADGAFKLVSEAWSLLSDKAKRLAYNEKLNVIGFHQNISTHTKVPSAPPTANGFHNSSSAVQSDARTQNKNARAGPPPVPSSYKKPDTFWTICNRCKTQYEYLRIYLNHTL 213

HSP 2 Score: 84.3445 bits (207), Expect = 1.433e-13
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 3

Query: 1239 LNLPGLKTVFRRHSERSKTWAIPREEFFHFSHQVPSYLVTGQEGLKSCKGCLKLDPAATPSELLQVFTEA 1448
            + + G KTVF RH + +K   IP+EE   FSHQVP +L+T +E   + KGC +LDPAATP ELLQV TEA
Sbjct:  634 IKVAGFKTVFHRHMDPNKVKKIPKEEMLRFSHQVPDHLLTDEEAPNAPKGCRELDPAATPLELLQVITEA 703

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BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy TrEMBL
Match: V7ASA8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G054500g PE=4 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.024e-50
Identity = 101/212 (47.64%), Postives = 139/212 (65.57%), Query Frame = 3

Query:  639 MD*NKEVAIRGKEIAEK-----DVAGAKRFVLMAENLYPVLGGLPQLIVALDVYISADEKINGEVDWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGA-GAFKLLLEAWSLLSDKARRFSYDQKLNLRGSFTNVL-HGKSSMATTSSNGFHNSYSVKNSNI--GDQHGATYSNSAPPCSTRTDTFWTTCSSCKMQFKYSRLCINLNL 1247
            M+ NK+ A+R KEIAE+     +  GAK+F L A+NLYP L  + QL+  +D+YISA+ K++GE+DWY +LGV P+ADEDT+ K Y KLA  LHPD+NK  GA GAFKL+ EAWSLLSDK +R  Y+QK +L+G   N   H  S     ++NGF+N      SN+  G+ +G   S + PP   + DTFWT C+ C+  ++Y R+ +N  L
Sbjct:    2 MECNKDEAVRAKEIAERKFSEREYVGAKKFALKAQNLYPDLEDITQLLTTIDIYISAENKVSGEMDWYGILGVSPFADEDTVRKQYRKLALTLHPDKNKSLGAEGAFKLVSEAWSLLSDKTKRLEYNQKRSLKGFQHNTSNHVGSKSDAPNANGFYNLKKNVTSNVRTGNNNGRAPSTAVPPSHKKADTFWTICNRCRTHYEYLRIYLNHTL 213

HSP 2 Score: 87.0409 bits (214), Expect = 2.150e-14
Identity = 39/70 (55.71%), Postives = 53/70 (75.71%), Query Frame = 3

Query: 1239 LNLPGLKTVFRRHSERSKTWAIPREEFFHFSHQVPSYLVTGQEGLKSCKGCLKLDPAATPSELLQVFTEA 1448
            + + G +TVF+RH++R +   I +EE F FSHQVP+YL+TGQE   + KGC +LDPAATP +LLQ+ TEA
Sbjct:  621 VKVAGFRTVFQRHADRVQERRILKEEMFRFSHQVPNYLLTGQEAQNAPKGCRELDPAATPLDLLQITTEA 690

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BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy TrEMBL
Match: B9IDX5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s02180g PE=4 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.418e-50
Identity = 109/214 (50.93%), Postives = 141/214 (65.89%), Query Frame = 3

Query:  639 MD*NKEVAIRGKEIAEK-----DVAGAKRFVLMAENLYPVLGGLPQLIVALDVYISADEKIN-GEVDWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGA-GAFKLLLEAWSLLSDKARRFSYDQKLNLRGSFTNV-LHGKSSMATTSSNGFHNSYSVKNSNIGDQHGATYS--NSAP-PCSTRTDTFWTTCSSCKMQFKYSRLCINLNL 1247
            M+ NK+ A+R KEIAEK     D  GAK+F L A++LYP L GL Q+++A DVYISA+ +I+ GEVDWY VLGV P+AD++T+ K Y KLA ILHPD+N+  GA GAFKL+ EAW LLS+K +R +Y+QKLN  G    V    K   +  S+NGFHN  S   S+   Q+    S   SAP P S + DTFWT C  C M ++Y R+ +N NL
Sbjct:    1 MECNKDEAVRAKEIAEKKFMGRDYVGAKKFALKAQSLYPELEGLSQMLIAFDVYISAENRISSGEVDWYSVLGVNPWADDETVRKQYHKLALILHPDKNQSLGADGAFKLVSEAWGLLSNKEKRLAYNQKLNPSGQQQRVPTRTKVPSSQHSANGFHNHNSTTTSHTRTQNKNLQSRPTSAPSPSSRKPDTFWTICHRCMMHYEYLRVYLNHNL 214

HSP 2 Score: 82.0333 bits (201), Expect = 7.021e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 3

Query: 1239 LNLPGLKTVFRRHSERSKTWAIPREEFFHFSHQVPSYLVTGQEGLKSCKGCLKLDPAATPSELLQVFTEAQ----VVIMKRAREDV 1484
            + + G K VFRRH   ++   IP+EE F FSHQVP++++TG+E   + +GC +LDPAA P E LQV TEA     V   ++A+E++
Sbjct:  568 IKVAGFKAVFRRHVGPNEVRRIPKEEMFRFSHQVPNHVLTGEEAHNAPEGCRELDPAAIPMEFLQVITEASEAAVVATGRKAKEEM 653

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy TrEMBL
Match: A0A0B0NVX2_GOSAR (DnaJ subfamily B member 12 OS=Gossypium arboreum GN=F383_21982 PE=4 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.517e-50
Identity = 108/229 (47.16%), Postives = 143/229 (62.45%), Query Frame = 3

Query:  639 MD*NKEVAIRGKEIAEK-----DVAGAKRFVLMAENLYPVLGGLPQLIVALDVYISADEKINGEVDWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGA-GAFKLLLEAWSLLSDKARRFSYDQKLNLRGSFTNVLHGKSSMATTSSNGFHNSYSVKNSNI-----GDQHGATYS------------NSAPPCS---TRTDTFWTTCSSCKMQFKYSRLCINLNL 1247
            M+ NK+ A R KE+AEK     D+ GAK+F L A+NLYP L G+PQ+I  LDVYISA+ KINGE DWY VLGV P AD++++ K Y KLA +LHPD+NK  GA GAFKL+ EAWSLLSDK RR +YD++   + + T      SS A+ ++NGF+N+     SN+      + H A  S             S+ P S    + +TFWT C  CKM ++Y R+ +N NL
Sbjct:    1 MECNKDEATRAKELAEKKFIAKDINGAKKFALKAQNLYPSLDGIPQMIATLDVYISAENKINGEADWYAVLGVNPLADDESVRKQYRKLALMLHPDKNKSIGAEGAFKLISEAWSLLSDKGRRAAYDKRRYAKVTQTVPTPSGSSKASKAANGFYNAAKTSTSNVKTSKSSNPHAAQSSTPSGRSSNTAAGQSSNPASFHKPKPNTFWTICHRCKMHYEYLRVYLNHNL 229

HSP 2 Score: 88.9669 bits (219), Expect = 5.480e-15
Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = 3

Query: 1239 LNLPGLKTVFRRHSERSKTWAIPREEFFHFSHQVPSYLVTGQEGLKSCKGCLKLDPAATPSELLQVFTEAQ 1451
            + + G KTVF RH +  +   IPREE F FSHQVPSYL+TGQE   + KGC +LDPAATP ELLQV  + +
Sbjct:  682 VKVAGFKTVFHRHLDHREIRRIPREEMFRFSHQVPSYLLTGQEASNAPKGCRELDPAATPVELLQVIMDVK 752

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy TrEMBL
Match: F6H6F9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g02590 PE=4 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 6.247e-50
Identity = 112/214 (52.34%), Postives = 141/214 (65.89%), Query Frame = 3

Query:  639 MD*NKEVAIRGKEIA-----EKDVAGAKRFVLMAENLYPVLGGLPQLIVALDVYISADEKINGEVDWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGA-GAFKLLLEAWSLLSDKARRFSYDQKLNLRGSFTNV--LHGKSSMATTSSNGFHNSYSVKNSNIGDQHGATYSNSAPPCST---RTDTFWTTCSSCKMQFKYSRLCINLNL 1247
            M+ NK+ A R K+IA     EKD  GAK+FVL A+NLYP L GL Q++  LDVYISA++K++GEVDWY +LGV P ADE+T+ K Y KLA ILHPD+NK  GA GAFKL+ EAWSLLSDK +R SY+QK +++GS   V   +G  S A  S+NG HN  S   SN      A   +     S    RTDTFWT C+ CK Q++Y R+ +N  L
Sbjct:    1 MECNKDEASRAKDIAVRKFREKDFLGAKKFVLKAQNLYPGLEGLSQMLTILDVYISAEKKVSGEVDWYGILGVSPLADEETVKKQYRKLALILHPDKNKSIGADGAFKLVSEAWSLLSDKGKRLSYNQKRDVKGSQQKVPSQNGVPS-APASANGVHNFTSGVASNARTHSNANRPSPTSVPSPSHRRTDTFWTVCNRCKTQYEYLRIYLNHTL 213

HSP 2 Score: 83.9593 bits (206), Expect = 2.037e-13
Identity = 48/117 (41.03%), Postives = 69/117 (58.97%), Query Frame = 3

Query: 1239 LNLPGLKTVFRRHSERSKTWAIPREEFFHFSHQVPSYLVTGQEGLKSCKGCLKLDPAATPSELLQVFTEAQ---VVIMKRARED----------VPFVD-SKRSEEKELVENDQEMK 1547
            + + G +T+F RH +  +   + REE F FSHQVP+ L+TGQE   + KGC +LDPAATP ELLQ+ TEA    VV + +  E              VD + +S + E+VEN +++K
Sbjct:  610 IKVAGFRTIFHRHEDPKEVRTVLREEMFCFSHQVPNRLLTGQEAQNAPKGCRELDPAATPLELLQIITEATEAPVVNVGKDEEGRLQSAQQIKLDKMVDYAAKSNDGEIVENSEQIK 726

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy TrEMBL
Match: A0A067KDB3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18409 PE=4 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 8.223e-50
Identity = 112/218 (51.38%), Postives = 144/218 (66.06%), Query Frame = 3

Query:  639 MD*NKEVAIRGKEIAEK-----DVAGAKRFVLMAENLYPVLGGLPQLIVALDVYISADEKINGEVDWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGA-GAFKLLLEAWSLLSDKARRFSYD-QKLNLRGS--FTNVLHGKS-SMATTSSNGFHN--SYSVKNSNIGDQHGATYSNSAPPCST---RTDTFWTTCSSCKMQFKYSRLCINLNL 1247
            M+ NK+ A + KEIAEK     D+AGAKRF L A+NLYP L G+PQ++   DVYISAD KINGE DWY +LGV P AD++T+ K Y KLA +LHPD+NK  GA GAFK + EAWSLLSDK++R +YD ++ N + S   +N   G S S AT +S G +N    SVK      + G    +S+ P ST   R +TFWT C  CKMQ++Y R+ +N NL
Sbjct:    1 MECNKDEAAKAKEIAEKKFLGKDLAGAKRFALKAQNLYPGLEGVPQMVATFDVYISADNKINGEADWYGILGVDPQADDETVRKQYRKLALMLHPDKNKSIGADGAFKFISEAWSLLSDKSKRAAYDLRRRNAKVSQRVSNPAAGSSGSSATPASTGVYNFSKPSVKTQKTTTRTG----HSSTPVSTHKSRPNTFWTVCHRCKMQYEYLRVYLNHNL 214

HSP 2 Score: 85.8853 bits (211), Expect = 5.305e-14
Identity = 39/69 (56.52%), Postives = 49/69 (71.01%), Query Frame = 3

Query: 1239 LNLPGLKTVFRRHSERSKTWAIPREEFFHFSHQVPSYLVTGQEGLKSCKGCLKLDPAATPSELLQVFTE 1445
            + + G KTVF +H +  +   IP+EE F FSH VPSYL+TGQEG  + KGC +LDPAATP ELLQV  +
Sbjct:  659 VKVAGFKTVFHQHLDPGEIRCIPKEELFRFSHHVPSYLLTGQEGPNAPKGCRELDPAATPVELLQVIND 727

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy TrEMBL
Match: M5XXH6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001843mg PE=4 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 8.555e-50
Identity = 101/213 (47.42%), Postives = 137/213 (64.32%), Query Frame = 3

Query:  639 MD*NKEVAIRGKEIAEK-----DVAGAKRFVLMAENLYPVLGGLPQLIVALDVYISADEKINGEVDWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGA-GAFKLLLEAWSLLSDKARRFSYDQKLNLRGSFTNVLHGKSSMATTSSNGFHNSYSVKNSNIGDQHGATYSNSAPPC----STRTDTFWTTCSSCKMQFKYSRLCINLNL 1247
            M+ N++ A R KEIAEK     D+ GAK+F L A+NL+P L G+PQ++  LDVY++A+ K+NGE DWY +LG  P AD++T+ + Y KLA +LHPD+NK  GA GAFKLL EAWSLLSDKA+R +YDQK N +          +S A++ +NGF+N      S    Q G T ++ +         R  TFWT C  CKMQ++Y R+ +N NL
Sbjct:    1 MECNRDEATRAKEIAEKKFTAKDIMGAKKFALKAQNLFPGLEGIPQMLATLDVYVAAENKMNGEPDWYGILGADPKADDETVRRQYRKLALMLHPDKNKSIGADGAFKLLSEAWSLLSDKAKRVAYDQKRNAKVHQKVATASGASQASSGANGFYNFTKSTTSGTKTQKGTTRASRSSASASSQKARPSTFWTVCHKCKMQYEYLRIYLNHNL 213

HSP 2 Score: 84.7297 bits (208), Expect = 1.222e-13
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 3

Query: 1239 LNLPGLKTVFRRHSERSKTWAIPREEFFHFSHQVPSYLVTGQEGLKSCKGCLKLDPAATPSELLQV 1436
            + + G KTVF RH +  +   IPREE F FSH VPSYL+TG E   + KGC +LDPAATPSELL+V
Sbjct:  660 VKVAGFKTVFHRHLDPEEARRIPREEMFRFSHHVPSYLLTGHEAPNAPKGCRELDPAATPSELLEV 725

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy TrEMBL
Match: A0A0D2PU36_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G165700 PE=4 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 9.637e-50
Identity = 107/229 (46.72%), Postives = 143/229 (62.45%), Query Frame = 3

Query:  639 MD*NKEVAIRGKEIAEK-----DVAGAKRFVLMAENLYPVLGGLPQLIVALDVYISADEKINGEVDWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGA-GAFKLLLEAWSLLSDKARRFSYDQKLNLRGSFTNVLHGKSSMATTSSNGFHNSYSVKNSNI-----GDQHGATYS------------NSAPPCS---TRTDTFWTTCSSCKMQFKYSRLCINLNL 1247
            M+ NK+ A R KE+AEK     D+ GAK+F L A+NLYP L G+PQ+I  L+VYISA+ KINGE DWY VLGV P AD++++ K Y KLA +LHPD+NK  GA GAFKL+ EAWSLLSDK RR +YD++   + + T      SS A+ ++NGF+N+     SN+      + H A  S             S+ P S    + +TFWT C  CKM ++Y R+ +N NL
Sbjct:    1 MECNKDEATRAKELAEKKFIAKDINGAKKFALKAQNLYPGLDGIPQMIATLNVYISAENKINGEADWYAVLGVNPLADDESVRKQYRKLALMLHPDKNKSIGAEGAFKLISEAWSLLSDKGRRAAYDKRRYAKVTQTVPTPSGSSKASKAANGFYNAAKTSTSNVKTSKSSNPHAAQSSTPSGRSSNTAAGQSSNPASFHKPKPNTFWTICHRCKMHYEYLRVYLNHNL 229

HSP 2 Score: 93.9745 bits (232), Expect = 1.573e-16
Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = 3

Query: 1239 LNLPGLKTVFRRHSERSKTWAIPREEFFHFSHQVPSYLVTGQEGLKSCKGCLKLDPAATPSELLQVFTEA---QVVIMKRAREDVPFVDSKRSEEKELVENDQEMK 1547
            + + G KTVF RH +  +   IPREE F FSHQVPSYL+TGQE   + KGC +LDPAATP ELLQV  +    +++   +   +   VD +++ +  +VEN  +MK
Sbjct:  682 VKVAGFKTVFHRHLDHREIRRIPREEMFRFSHQVPSYLLTGQEASNAPKGCRELDPAATPVELLQVIMDVKDEEILEKGKVITEENVVDVEKANDGGVVENRDKMK 787

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy TrEMBL
Match: B9GZP4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s16970g PE=4 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 1.715e-49
Identity = 105/211 (49.76%), Postives = 136/211 (64.45%), Query Frame = 3

Query:  639 MD*NKEVAIRGKEIAEK-----DVAGAKRFVLMAENLYPVLGGLPQLIVALDVYISADEKINGEVDWYRVLGVQPYADEDTIWKHYMKLAFILHPDENKFAGA-GAFKLLLEAWSLLSDKARRFSYDQKLNLRGSFTNVLHGKSSMATTSSNGFHN--SYSVKNSNIGDQHGATYSNSAPPCSTRTDTFWTTCSSCKMQFKYSRLCINLNL 1247
            M+ NK+ A R KEIAEK     D+AGAK+F L A+NLYP L G+PQ++  LDVY++A  KINGE DWY +LG  P AD++ + KHY KLA +LHPD+NK  GA GAFK + EAWSLLSDK +R +YDQ+ N +    +     SS A   SNGF N    SVK +    + G + S  A    T+ +TFWT C  CKMQ++Y R+ +N  L
Sbjct:    1 MECNKDEATRAKEIAEKKFSAKDIAGAKKFALKAQNLYPGLEGIPQMMATLDVYVAAGNKINGEADWYGILGADPQADDEAVRKHYRKLALMLHPDKNKSVGADGAFKFISEAWSLLSDKTKRMAYDQRRNGKVFQKSSSSFGSSSAKPGSNGFFNFTKSSVKTNKSTSRTGHS-STPASSYKTKPNTFWTVCHGCKMQYEYLRVYLNHKL 210

HSP 2 Score: 87.0409 bits (214), Expect = 2.369e-14
Identity = 40/71 (56.34%), Postives = 50/71 (70.42%), Query Frame = 3

Query: 1239 LNLPGLKTVFRRHSERSKTWAIPREEFFHFSHQVPSYLVTGQEGLKSCKGCLKLDPAATPSELLQVFTEAQ 1451
            + + G KTVF +H +  +   IPREE F FSH VPSYL+ GQEG  + KGC +LDPAATPSELLQV  + +
Sbjct:  667 VKVAGFKTVFHQHLDPKEVRRIPREEMFRFSHHVPSYLLMGQEGPNAPKGCRELDPAATPSELLQVVVDVK 737

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
DNAJ_STAAB	1.057e-7	49.21	Chaperone protein DnaJ OS=Staphylococcus aureus (s...	[more]
DNAJ_STAAW	1.104e-7	49.21	Chaperone protein DnaJ OS=Staphylococcus aureus (s...	[more]
DNAJ_STAAT	1.104e-7	49.21	Chaperone protein DnaJ OS=Staphylococcus aureus (s...	[more]
DNAJ_STAAS	1.104e-7	49.21	Chaperone protein DnaJ OS=Staphylococcus aureus (s...	[more]
DNAJ_STAAN	1.104e-7	49.21	Chaperone protein DnaJ OS=Staphylococcus aureus (s...	[more]
DNAJ_STAAM	1.104e-7	49.21	Chaperone protein DnaJ OS=Staphylococcus aureus (s...	[more]
DNAJ_STAAE	1.104e-7	49.21	Chaperone protein DnaJ OS=Staphylococcus aureus (s...	[more]
DNAJ_STAAC	1.104e-7	49.21	Chaperone protein DnaJ OS=Staphylococcus aureus (s...	[more]
DNAJ_STAA9	1.104e-7	49.21	Chaperone protein DnaJ OS=Staphylococcus aureus (s...	[more]
DNAJ_STAA8	1.104e-7	49.21	Chaperone protein DnaJ OS=Staphylococcus aureus (s...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0097367 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
F6HGB5_VITVI	2.954e-51	50.00	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B9RIK9_RICCO	4.450e-51	50.70	Heat shock protein binding protein, putative OS=Ri...	[more]
V7ASA8_PHAVU	1.024e-50	47.64	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]
B9IDX5_POPTR	1.418e-50	50.93	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
A0A0B0NVX2_GOSAR	1.517e-50	47.16	DnaJ subfamily B member 12 OS=Gossypium arboreum G...	[more]
F6H6F9_VITVI	6.247e-50	52.34	Putative uncharacterized protein OS=Vitis vinifera...	[more]
A0A067KDB3_JATCU	8.223e-50	51.38	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
M5XXH6_PRUPE	8.555e-50	47.42	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
A0A0D2PU36_GOSRA	9.637e-50	46.72	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
B9GZP4_POPTR	1.715e-49	49.76	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001623	DnaJ domain	SMART	SM00271	dnaj_3	coord: 34..90 e-value: 3.7E-10 score: 49.7
IPR001623	DnaJ domain	GENE3D	1.10.287.110		coord: 32..97 e-value: 5.6E-16 score: 58.0
IPR001623	DnaJ domain	PFAM	PF00226	DnaJ	coord: 35..95 e-value: 1.2E-14 score: 54.1
IPR001623	DnaJ domain	PROSITE	PS50076	DNAJ_2	coord: 35..98 score: 14.576
IPR001623	DnaJ domain	SUPERFAMILY	46565	Chaperone J-domain	coord: 29..99
IPR024593	Domain of unknown function DUF3444	PFAM	PF11926	DUF3444	coord: 178..217 e-value: 1.5E-6 score: 27.9
None	No IPR available	PANTHER	PTHR24078:SF211	SUBFAMILY NOT NAMED	coord: 136..177 coord: 1..114
None	No IPR available	PANTHER	PTHR24078	DNAJ HOMOLOG SUBFAMILY C MEMBER	coord: 1..114
None	No IPR available	PANTHER	PTHR24078	DNAJ HOMOLOG SUBFAMILY C MEMBER	coord: 136..177

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0097367 ID=g.barbadense_cottongen_reftransV1_0097367; Name=g.barbadense_cottongen_reftransV1_0097367; organism=Gossypium barbadense; type=contig; length=2195bp
AAGATGCGCCCCTCGGTCCGAATCCACGCAGGAGAAAGGGTCTCCGATGG
CCGAAACCGAAGGTAGGTTCCTTCCCTGATCTCAAAAGGTAACCTTTTTT
CGCTTTCTTTTTGAATATCTATATATATATGTGTTATATTCGAAACTGGA
CTTGCAAAGGAAATGAGAAAACAGAACAGAAAGAAACACTTTGATTCTTT
TTTGTATTCGATTGCTCTTCCTTTTTTTTTTGTATAATATGCGTGTATTG
TGCCAGTCCCCCCTTTACAATGATCCCCTAGGGCTTCTATATAGCCAAAA
TAATAATAATAAAAAAGAAAAAGAAAAATACAATTGTTTTTGTTCTTTTC
TGTTGTTGTTGCTGTCCATTTTTGCAGGTACGGAGAAGGCCAGCTGGCGT
GCGGTGCTGCGTACGGAGGTACGGAGAGGCCTTGGAGGCTGCTGGAGGCT
TGTTGCGGCGCAAGGGAAACCCTAGGGTTTCTGTTGGTGTTTTAATTTTG
GGCCATTCGGGCCTTGTATTTTTTGGGCTAATGTTTGGGTTATAATGTTT
GGATTTTATATTTTGGCTTATTTTTTTGTATTTTCATTTTGTTTTTATTT
TCATACGGCCCCGGCATAATTTGGGCCTTACAACTAGTATGGATTAAAAC
AAGGAAGTGGCCATTAGAGGTAAAGAGATTGCTGAGAAGGATGTTGCTGG
GGCAAAAAGATTTGTTTTGATGGCTGAAAACCTGTATCCTGTGCTCGGTG
GTCTTCCTCAGTTGATTGTTGCTCTTGACGTATACATATCTGCCGATGAA
AAGATCAATGGAGAAGTTGACTGGTACAGAGTGCTTGGTGTTCAGCCATA
TGCCGATGAGGACACCATTTGGAAACATTACATGAAGCTGGCTTTTATTC
TTCATCCGGACGAAAACAAATTCGCAGGTGCAGGAGCTTTCAAACTTCTA
TTAGAAGCTTGGAGTTTGTTGTCTGATAAAGCAAGAAGATTTTCTTATGA
CCAGAAGCTGAACTTAAGGGGTAGCTTTACGAATGTTCTACATGGGAAAT
CATCAATGGCAACAACAAGCTCTAATGGTTTCCATAATTCCTACAGTGTT
AAAAACTCAAACATCGGTGATCAGCACGGTGCTACTTATTCCAATTCTGC
TCCTCCTTGCTCAACAAGAACTGATACATTTTGGACAACCTGCAGTTCCT
GTAAGATGCAGTTCAAGTACTCCAGACTTTGTATCAACTTGAATCTTCCA
GGTTTAAAGACAGTGTTCCGCAGGCATTCGGAACGAAGTAAAACCTGGGC
GATTCCGAGGGAAGAGTTTTTTCATTTCTCTCACCAGGTTCCGTCTTATT
TGGTAACAGGTCAAGAAGGTCTAAAGTCTTGTAAGGGCTGTTTGAAACTT
GATCCAGCGGCTACTCCTTCAGAACTGCTTCAAGTTTTCACTGAAGCTCA
AGTGGTGATCATGAAAAGAGCTCGAGAAGATGTACCGTTTGTGGATTCAA
AAAGATCCGAAGAAAAAGAGCTGGTTGAGAATGACCAAGAAATGAAACCA
AATACTACCAAAGAAGGTGTTCGAGAAGTTGTTATAGAAGAAGATATCAA
GAAAGAAAAGGAAAACGAAAAACTGGGGGGCTGCTTGTTTACATTAGGCG
ACAACAAAATAAAACCCAACAACTAGGGAAACATTTTGATGAATAGGGAT
ATTGCCTTTTTTTCAATGGTAGGAAAGAATGTGCAGCAAAAACAGTACAA
GTCTAAGAATATAGAAAGTTCCATAGTTTTTTTCCTCATCAGCCTATAGC
CCTATACAAATCAGCAAAAGCTGCAAACAAAGGGATAGGGAAAACTCACA
TTAAAGCTGAGTTCAAGGTACATTCTGTGAACATGAAGAATGCCTTGAAC
ATCAGCACAGGTTTTCTTTGTTTATTTCATTACATGTTTATAGGTCAAAA
CACCCACAGGAAAATGGACTAATTTGTTAGCAAACTAGTCAAAAACACCT
ACAGGTCCCGGTTTTCCTGTTTTTGAACCCAGAGTACTTGGATATGTTAC
AGCTTTTACATTTTTCATTTTGTATCAAATCCCCCATGAATGTCTTATTT
TTGTTACCGTAATTGTCTGTCATTGCCATATATATACCCTGTCAAATATT
TAAAATGTTTATATATAAATTTTCGAGTGACTCGAATTTAGTGGA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001623	DnaJ_domain
IPR024593	DUF3444

Search form

g.barbadense_cottongen_reftransV1_0097367, g.barbadense_cottongen_reftransV1_0097367 (contig) Gossypium barbadense

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