g.barbadense_cottongen_reftransV1_0091568, g.barbadense_cottongen_reftransV1_0091568 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: GIS2_YEAST (Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.668e-17 Identity = 59/163 (36.20%), Postives = 84/163 (51.53%), Query Frame = 1 Query: 1513 STTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEP---------VCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSA 1974 S C+ C + GHLA C E +C K GH+ DC PR + + C NC + GH ++CT ++ C NC++TGH++R+C EP C C H+A+ C K I G + C CGQ GH+S+DC + +C NC GH+ +CP A Sbjct: 2 SQKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTV--EFKQCYNCGETGHVRSECTVQR-CFNCNQTGHISREC-PEPKKTSRFSKVSCYKCGGPNHMAKDCMK---EDGISG----LKCYTCGQAGHMSRDCQNDRLCYNCNETGHISKDCPKA 153 HSP 2 Score: 82.0333 bits (201), Expect = 2.624e-16 Identity = 54/146 (36.99%), Postives = 76/146 (52.05%), Query Frame = 1 Query: 1573 EPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNE-----KACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCF-----SIVICSNCGGRGHLHYECPSARM 1980 + C + GK+GHLA DC RLC NC K GH DCT K C NC +TGH+ +C + C CN +GH++R+C + K +S RF + C CG P H+++DC S + C CG GH+ +C + R+ Sbjct: 3 QKACYVCGKIGHLAEDC-------DSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQ-RCFNCNQTGHISRECPEPKKTS----RFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQNDRL 136 HSP 3 Score: 59.6918 bits (143), Expect = 6.797e-9 Identity = 36/95 (37.89%), Postives = 49/95 (51.58%), Query Frame = 1 Query: 1705 NEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDR 1989 ++KAC C K GHLA DC +E +C CN GHV C + F+ C NCG+ GH+ +C ++ C NC GH+ ECP + R Sbjct: 2 SQKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTV-----EFKQ--CYNCGETGHVRSEC-TVQRCFNCNQTGHISRECPEPKKTSR 88 HSP 4 Score: 57.7658 bits (138), Expect = 3.441e-8 Identity = 34/98 (34.69%), Postives = 53/98 (54.08%), Query Frame = 1 Query: 1492 HIAVECNSTTICWNCKEPGHLAGQCPYEP---------VCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDC 1758 H+ EC + C+NC + GH++ +CP EP C G H+A+DC+ + C C +AGH DC N++ C NC++TGH+++DC Sbjct: 57 HVRSEC-TVQRCFNCNQTGHISRECP-EPKKTSRFSKVSCYKCGGPNHMAKDCM--KEDGISGLKCYTCGQAGHMSRDCQNDRLCYNCNETGHISKDC 150
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_RAT (Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.329e-13 Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 1 Query: 1522 ICWNCKEPGHLAGQCP-YEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC--TNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC 1908 IC+ C E GHLA C E C G+ GH+A+DC P+ + C NC K GH DC +E+ C +C + GH+ +DC + C C +GHVA C+K ++ C CG+ GH++++C Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTS----------EVNCYRCGESGHLAREC 171 HSP 2 Score: 57.7658 bits (138), Expect = 3.671e-8 Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 1 Query: 1717 CNNCHKTGHLARDCH-NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYECPSARMY 1983 C C ++GHLA+DC E C C GH+A+ C + K R R+ C NCG+PGH+++DC C +CG GH+ +C + Y Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPK-------REREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCY 138
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_PONAB (Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.329e-13 Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 1 Query: 1522 ICWNCKEPGHLAGQCP-YEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC--TNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC 1908 IC+ C E GHLA C E C G+ GH+A+DC P+ + C NC K GH DC +E+ C +C + GH+ +DC + C C +GHVA C+K ++ C CG+ GH++++C Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTS----------EVNCYRCGESGHLAREC 171 HSP 2 Score: 57.7658 bits (138), Expect = 3.671e-8 Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 1 Query: 1717 CNNCHKTGHLARDCH-NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYECPSARMY 1983 C C ++GHLA+DC E C C GH+A+ C + K R R+ C NCG+PGH+++DC C +CG GH+ +C + Y Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPK-------REREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCY 138
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_HUMAN (Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.329e-13 Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 1 Query: 1522 ICWNCKEPGHLAGQCP-YEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC--TNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC 1908 IC+ C E GHLA C E C G+ GH+A+DC P+ + C NC K GH DC +E+ C +C + GH+ +DC + C C +GHVA C+K ++ C CG+ GH++++C Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTS----------EVNCYRCGESGHLAREC 171 HSP 2 Score: 57.7658 bits (138), Expect = 3.671e-8 Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 1 Query: 1717 CNNCHKTGHLARDCH-NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYECPSARMY 1983 C C ++GHLA+DC E C C GH+A+ C + K R R+ C NCG+PGH+++DC C +CG GH+ +C + Y Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPK-------REREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCY 138
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: HEXP_LEIMA (DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.377e-13 Identity = 62/218 (28.44%), Postives = 86/218 (39.45%), Query Frame = 1 Query: 1492 HIAVEC--------NSTTICWNCKEPGHLAGQCPYEP--------VCNM*GKMGHLARDCLNPRLP-AHDARLCNNCYKAGHFVADC------------------------TNEKACNNCHKTGHLARDCHN---------EPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIV-------ICSNCGGRGHLHYECPSA 1974 H A EC +T C+ C E GH++ +CP E C G+ GH++RDC N P A C C + GH DC + ++ C C GH++RDC N + C C +GH++R C + G D C CG+ GH+S++C S C CG GH+ ECP A Sbjct: 26 HYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAG---DRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEA 240 HSP 2 Score: 75.0998 bits (183), Expect = 1.936e-13 Identity = 63/205 (30.73%), Postives = 80/205 (39.02%), Query Frame = 1 Query: 1510 NSTTICWNCKEPGHLAGQCPY--------EPVCNM*GKMGHLARDCLNP-RLPAHDARLCNNCYKAGHFVADCTNEK--------ACNNCHKTGHLARDC------------------------HNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC---------FSIVICSNCGGRGHLHYECPSA 1974 S+T C NC + GH A +CP C G+ GH++R+C N R A A C C +AGH DC N C C + GHL+RDC + C C +GH++R C + G D C CG GHIS+DC C CG GH+ ECPSA Sbjct: 13 ESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAG---DRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSA 214 HSP 3 Score: 70.0922 bits (170), Expect = 7.491e-12 Identity = 57/206 (27.67%), Postives = 80/206 (38.83%), Query Frame = 1 Query: 1522 ICWNCKEPGHLAGQCPYEP--------VCNM*GKMGHLARDCLNPRLPAHDA-----------------RLCNNCYKAGHFVADCTN---------EKACNNCHKTGHLARDCHN---------EPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIV------------ICSNCGGRGHLHYECPSA 1974 C+ C E GH++ CP C G+ GHL+RDC + + + R C C AGH DC N ++ C C GH++RDC N + C C SGH++R+C + D C CG+PGHIS++C C CG GH+ +CPS+ Sbjct: 71 TCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSG-----DRACYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_BOVIN (Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.001e-13 Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 1 Query: 1522 ICWNCKEPGHLAGQCP-YEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC--TNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC 1908 IC+ C E GHLA C E C G+ GH+A+DC P+ + C NC K GH DC +E+ C +C + GH+ +DC + C C +GHVA C+K ++ C CG+ GH++++C Sbjct: 46 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTS----------EVNCYRCGESGHLAREC 164 HSP 2 Score: 70.4774 bits (171), Expect = 2.552e-12 Identity = 61/182 (33.52%), Postives = 76/182 (41.76%), Query Frame = 1 Query: 1513 STTICWNCKEPGHLAGQCPYE----------------------PVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTN-----EKACNNCHKTGHLARDCH--NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYEC 1965 S+ C+ C GH A +CP +C G+ GHLA+DC DA C NC + GH DC E+ C NC K GHLARDC +E C C GH+ + C K K C CG+ GH++ +C S V C CG GHL EC Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC----DLQEDA--CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK-------------CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 164
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_CHICK (Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 2.732e-13 Identity = 59/183 (32.24%), Postives = 76/183 (41.53%), Query Frame = 1 Query: 1513 STTICWNCKEPGHLAGQCPYE-----------------------PVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTN-----EKACNNCHKTGHLARDCH--NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYEC 1965 S+ C+ C GH A +CP +C G+ GHLA+DC + + C NC + GH DC E+ C NC K GHLARDC +E C C GH+ + C K K C CG+ GH++ +C S V C CG GHL EC Sbjct: 2 SSNECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDC-----DLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK-------------CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 166 HSP 2 Score: 56.9954 bits (136), Expect = 6.532e-8 Identity = 41/134 (30.60%), Postives = 64/134 (47.76%), Query Frame = 1 Query: 1594 GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDC--HNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYECPSARMY 1983 G+ GH AR+C P + + F++ + C C ++GHLA+DC + C C GH+A+ C + K R R+ C NCG+PGH+++DC C +CG GH+ +C + Y Sbjct: 10 GRTGHWAREC--PTGIGRGRGMRSRGRAGFQFMSS-SLPDICYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPK-------REREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCY 133
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: BYR3_SCHPO (Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=byr3 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 2.890e-13 Identity = 52/144 (36.11%), Postives = 66/144 (45.83%), Query Frame = 1 Query: 1576 PVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCT---NEKACNNCHKTGHLARDCHNEP------VCNICNISGHVARQCAKWKLSSD--IGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSA 1974 P C G+ GH AR+C +C NC + GH ++CT EK C C GHL RDC + P C C GH+AR C S GG ++ C CG GH ++DC V C +CG GH +EC A Sbjct: 17 PRCYNCGENGHQARECT-------KGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRSFECQQA 153 HSP 2 Score: 70.8626 bits (172), Expect = 2.318e-12 Identity = 57/162 (35.19%), Postives = 70/162 (43.21%), Query Frame = 1 Query: 1489 SHIAVECNSTTICWNCKEPGHLAGQCP---YEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC-TNEKA-------------CNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVI 1923 H A EC +IC+NC + GH A +C E C G GHL RDC + P A C C + GH DC TN + C C GH ARDC C C GH + +C + +SD C C QPGHI+ +C S VI Sbjct: 26 GHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAE-CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRSFEC---QQASD------GQLCYKCNQPGHIAVNCTSPVI 177
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_MOUSE (Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 3.974e-13 Identity = 46/133 (34.59%), Postives = 69/133 (51.88%), Query Frame = 1 Query: 1522 ICWNCKEPGHLAGQCPYE--PVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC--TNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC 1908 IC+ C E GHLA C + C G+ GH+A+DC P+ + C NC K GH DC +E+ C +C + GH+ +DC + C C +GHVA C+K ++ C CG+ GH++++C Sbjct: 53 ICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTS----------EVNCYRCGESGHLAREC 172 HSP 2 Score: 70.8626 bits (172), Expect = 2.038e-12 Identity = 59/189 (31.22%), Postives = 75/189 (39.68%), Query Frame = 1 Query: 1513 STTICWNCKEPGHLAGQCPYE-----------------------------PVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTN-----EKACNNCHKTGHLARDCH--NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYEC 1965 S+ C+ C GH A +CP +C G+ GHLA+DC + C NC + GH DC E+ C NC K GHLARDC +E C C GH+ + C K K C CG+ GH++ +C S V C CG GHL EC Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDC-----DLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK-------------CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 172 HSP 3 Score: 56.9954 bits (136), Expect = 7.261e-8 Identity = 33/93 (35.48%), Postives = 49/93 (52.69%), Query Frame = 1 Query: 1717 CNNCHKTGHLARDC--HNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYECPSARMY 1983 C C ++GHLA+DC + C C GH+A+ C + K R R+ C NCG+PGH+++DC C +CG GH+ +C + Y Sbjct: 54 CYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPK-------REREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCY 139
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CSP1_ARATH (Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.093e-11 Identity = 53/170 (31.18%), Postives = 68/170 (40.00%), Query Frame = 1 Query: 1525 CWNCKEPGHLAGQCPY-------------EPVCNM*GKMGHLARDCLNPRLPAHDARL--------CNNCYKAGHFVADCTNEKACNN-------------CHKTGHLARDC--HNEPV--CNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIV 1920 C+NC + GH A C C G +GH+ARDC + D R C C GHF DCT + A N C GH+ARDC +P C C SGH+AR C + GG D C CG+ GH +++C S+ Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGS----GGGGNDNACYKCGKEGHFARECSSVA 299 HSP 2 Score: 57.3806 bits (137), Expect = 1.565e-7 Identity = 48/163 (29.45%), Postives = 65/163 (39.88%), Query Frame = 1 Query: 1594 GKMGHLARDCLNPRLPAHDARL------CNNCYKAGHFVADCTN-------------EKACNNCHKTGHLARDCHNEPV---------------CNICNISGHVARQCAKWKLSSDI-GGRFRDIFCRNCGQPGHISQDCFS----IVICSNCGGRGHLHYEC 1965 G++GH+++DC R C NC GHF DCT+ C C GH+ARDC + V C C GH AR C + + ++ G C +CG GHI++DC + C CGG GHL +C Sbjct: 106 GELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDC 268
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: A0A0D2TCD2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G255700 PE=4 SV=1) HSP 1 Score: 328.561 bits (841), Expect = 6.834e-104 Identity = 158/173 (91.33%), Postives = 163/173 (94.22%), Query Frame = 1 Query: 1489 SHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007 HIAV CNSTT+CWNCKEPGHLAGQCP EPVCNM GKMGHLARDCLNPRL AHDARLCNNCYKAGHF A+CTNEKACNNC KTGHL+RDCHNEPVCNICNISGHVARQCAK KLSSDIGGRFRDIFCRNCGQPGHISQDC SI+IC+N GGRGHLHYECPSARMYDRSGVRRY Sbjct: 25 GHIAVGCNSTTMCWNCKEPGHLAGQCPNEPVCNMCGKMGHLARDCLNPRLLAHDARLCNNCYKAGHFAANCTNEKACNNCRKTGHLSRDCHNEPVCNICNISGHVARQCAKSKLSSDIGGRFRDIFCRNCGQPGHISQDCVSIIICNNFGGRGHLHYECPSARMYDRSGVRRY 197
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: A0A0D2RRP0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G255700 PE=4 SV=1) HSP 1 Score: 328.176 bits (840), Expect = 1.286e-103 Identity = 158/172 (91.86%), Postives = 163/172 (94.77%), Query Frame = 1 Query: 1492 HIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007 HIAV CNSTT+CWNCKEPGHLAGQCP EPVCNM GKMGHLARDCLNPRL AHDARLCNNCYKAGHF A+CTNEKACNNC KTGHL+RDCHNEPVCNICNISGHVARQCAK KLSSDIGGRFRDIFCRNCGQPGHISQDC SI+IC+N GGRGHLHYECPSARMYDRSGVRRY Sbjct: 37 HIAVGCNSTTMCWNCKEPGHLAGQCPNEPVCNMCGKMGHLARDCLNPRLLAHDARLCNNCYKAGHFAANCTNEKACNNCRKTGHLSRDCHNEPVCNICNISGHVARQCAKSKLSSDIGGRFRDIFCRNCGQPGHISQDCVSIIICNNFGGRGHLHYECPSARMYDRSGVRRY 208
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: A0A0D2QP05_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G063900 PE=4 SV=1) HSP 1 Score: 329.717 bits (844), Expect = 2.621e-103 Identity = 158/173 (91.33%), Postives = 161/173 (93.06%), Query Frame = 1 Query: 1489 SHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007 SHIAVECNSTT+CWNCKEPGHLAGQ PYEPVCNM GKMGHLA+DCLNPRLPAHDARLCNNC KAGHF ADCTNEKACNNCHK GHL DCHN+PVCNICNISGHVARQCAK KLSS IGG FRDI CRNCGQPGHISQDC SIVICSNCGGRGHLHYECPSARMYDRSGVRRY Sbjct: 92 SHIAVECNSTTMCWNCKEPGHLAGQFPYEPVCNMCGKMGHLAQDCLNPRLPAHDARLCNNCNKAGHFAADCTNEKACNNCHKIGHLGHDCHNKPVCNICNISGHVARQCAKSKLSSVIGGHFRDIVCRNCGQPGHISQDCVSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 264
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: A0A0D2UX15_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G255700 PE=4 SV=1) HSP 1 Score: 327.405 bits (838), Expect = 7.079e-103 Identity = 159/175 (90.86%), Postives = 164/175 (93.71%), Query Frame = 1 Query: 1483 LCSHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007 L HIAV CNSTT+CWNCKEPGHLAGQCP EPVCNM GKMGHLARDCLNPRL AHDARLCNNCYKAGHF A+CTNEKACNNC KTGHL+RDCHNEPVCNICNISGHVARQCAK KLSSDIGGRFRDIFCRNCGQPGHISQDC SI+IC+N GGRGHLHYECPSARMYDRSGVRRY Sbjct: 65 LPGHIAVGCNSTTMCWNCKEPGHLAGQCPNEPVCNMCGKMGHLARDCLNPRLLAHDARLCNNCYKAGHFAANCTNEKACNNCRKTGHLSRDCHNEPVCNICNISGHVARQCAKSKLSSDIGGRFRDIFCRNCGQPGHISQDCVSIIICNNFGGRGHLHYECPSARMYDRSGVRRY 239
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: A0A0B0N4X8_GOSAR (Zinc finger GIS2 OS=Gossypium arboreum GN=F383_32724 PE=4 SV=1) HSP 1 Score: 326.635 bits (836), Expect = 5.307e-102 Identity = 156/173 (90.17%), Postives = 159/173 (91.91%), Query Frame = 1 Query: 1489 SHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007 SHIA ECNS T+CWNCKEPGHL GQCP EPVCNM GKMGHLARDCLNPRLPA DARLCN CYKAGHF DCTNEKACNNC KTGHLARDC NEPVCNICNISGHVARQCAK KLSSD+GGRFRDIFCRNCGQPGHISQD SIVIC+NCGGRGHLHYECPSARMYDRSGVRRY Sbjct: 99 SHIAAECNSITMCWNCKEPGHLPGQCPSEPVCNMCGKMGHLARDCLNPRLPAPDARLCNKCYKAGHFATDCTNEKACNNCRKTGHLARDCPNEPVCNICNISGHVARQCAKSKLSSDMGGRFRDIFCRNCGQPGHISQDGVSIVICNNCGGRGHLHYECPSARMYDRSGVRRY 271
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: A0A0D2UWY2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G255700 PE=4 SV=1) HSP 1 Score: 309.301 bits (791), Expect = 5.500e-97 Identity = 149/162 (91.98%), Postives = 154/162 (95.06%), Query Frame = 1 Query: 1522 ICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007 +CWNCKEPGHLAGQCP EPVCNM GKMGHLARDCLNPRL AHDARLCNNCYKAGHF A+CTNEKACNNC KTGHL+RDCHNEPVCNICNISGHVARQCAK KLSSDIGGRFRDIFCRNCGQPGHISQDC SI+IC+N GGRGHLHYECPSARMYDRSGVRRY Sbjct: 1 MCWNCKEPGHLAGQCPNEPVCNMCGKMGHLARDCLNPRLLAHDARLCNNCYKAGHFAANCTNEKACNNCRKTGHLSRDCHNEPVCNICNISGHVARQCAKSKLSSDIGGRFRDIFCRNCGQPGHISQDCVSIIICNNFGGRGHLHYECPSARMYDRSGVRRY 162 HSP 2 Score: 59.6918 bits (143), Expect = 6.072e-7 Identity = 35/95 (36.84%), Postives = 46/95 (48.42%), Query Frame = 1 Query: 1489 SHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDAR-----LCNNCYKAGHFVADCTNEKACNNCHKTGHLARDC 1758 H A C + C NC++ GHL+ C EPVCN+ GH+AR C +L + C NC + GH DC + CNN GHL +C Sbjct: 54 GHFAANCTNEKACNNCRKTGHLSRDCHNEPVCNICNISGHVARQCAKSKLSSDIGGRFRDIFCRNCGQPGHISQDCVSIIICNNFGGRGHLHYEC 148
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: A0A061FNJ8_THECC (Zinc knuckle family protein isoform 2 OS=Theobroma cacao GN=TCM_042822 PE=4 SV=1) HSP 1 Score: 281.952 bits (720), Expect = 2.191e-85 Identity = 138/174 (79.31%), Postives = 147/174 (84.48%), Query Frame = 1 Query: 1483 LCSHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRR 2004 L H+A ECNSTT+CWNCKEPGHLA QCP EPVC+M G MGHLARDC+N LPAHDARLCNNCYK GH ADCTNEKACNNC KTGHLARDC EPVCNICNISGHVAR C K LSSD+G F++I CRNCGQPGHIS+DC SIVI +NC GRGHLHYECPSARMYD GVRR Sbjct: 68 LPGHVAAECNSTTMCWNCKEPGHLANQCPNEPVCHMCGNMGHLARDCINLGLPAHDARLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCLYEPVCNICNISGHVARHCTKSSLSSDMGSPFQNIICRNCGQPGHISRDCVSIVISNNCHGRGHLHYECPSARMYDCLGVRR 241
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: A0A061FME6_THECC (Zinc knuckle family protein isoform 1 OS=Theobroma cacao GN=TCM_042822 PE=4 SV=1) HSP 1 Score: 281.182 bits (718), Expect = 2.928e-85 Identity = 138/174 (79.31%), Postives = 147/174 (84.48%), Query Frame = 1 Query: 1483 LCSHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRR 2004 L H+A ECNSTT+CWNCKEPGHLA QCP EPVC+M G MGHLARDC+N LPAHDARLCNNCYK GH ADCTNEKACNNC KTGHLARDC EPVCNICNISGHVAR C K LSSD+G F++I CRNCGQPGHIS+DC SIVI +NC GRGHLHYECPSARMYD GVRR Sbjct: 65 LPGHVAAECNSTTMCWNCKEPGHLANQCPNEPVCHMCGNMGHLARDCINLGLPAHDARLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCLYEPVCNICNISGHVARHCTKSSLSSDMGSPFQNIICRNCGQPGHISRDCVSIVISNNCHGRGHLHYECPSARMYDCLGVRR 238
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: F6HN80_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g00720 PE=4 SV=1) HSP 1 Score: 281.952 bits (720), Expect = 1.351e-84 Identity = 137/175 (78.29%), Postives = 147/175 (84.00%), Query Frame = 1 Query: 1483 LCSHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007 L HIA ECNSTT+CWNCKE GHLA QCP +PVC+M GKMGHLARDC +P LPAHDARLCNNCYK GH ADCTNEKACNNCHKTGHLARDC NEPVCNICNISGHVARQC K +L + GG FRDI C NCGQPGHIS+DC SIVIC+NCGGRGH +ECPS RM+D VRRY Sbjct: 126 LPGHIAAECNSTTMCWNCKESGHLASQCPNDPVCHMCGKMGHLARDCSSPGLPAHDARLCNNCYKPGHIAADCTNEKACNNCHKTGHLARDCLNEPVCNICNISGHVARQCPKSRLVPETGGPFRDITCHNCGQPGHISRDCVSIVICNNCGGRGHQSFECPSVRMFDHV-VRRY 299 HSP 2 Score: 93.9745 bits (232), Expect = 1.768e-17 Identity = 52/129 (40.31%), Postives = 70/129 (54.26%), Query Frame = 1 Query: 1579 VCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYEC 1965 +CN + GH ARDC N +CNNC GH A+C + C NC ++GHLA C N+PVC++C GH+AR C+ L + C NC +PGHI+ DC + C+NC GHL +C Sbjct: 101 LCNKCKRPGHFARDCPN-------VTVCNNCGLPGHIAAECNSTTMCWNCKESGHLASQCPNDPVCHMCGKMGHLARDCSSPGLPAHDAR-----LCNNCYKPGHIAADCTNEKACNNCHKTGHLARDC 217
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: W1PCY9_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00012p00124660 PE=4 SV=1) HSP 1 Score: 245.743 bits (626), Expect = 1.132e-72 Identity = 116/176 (65.91%), Postives = 137/176 (77.84%), Query Frame = 1 Query: 1492 HIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSD----IGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007 HIA EC + T+CWNC+EPGH+A +C EP+C+ GK+GHLAR+C P LP+ D RLCNNCYK GH ADCTNEKACNNC KTGHLARDC N+PVCN+CN++GHVARQC K L+ GG FRD+ CR C QPGHIS+DC +VIC+NCGGRGH+ YECPS R DR G+RRY Sbjct: 6 HIASECTTKTLCWNCREPGHVASECSNEPICHTCGKVGHLARECSGPGLPSGDTRLCNNCYKQGHIAADCTNEKACNNCRKTGHLARDCPNDPVCNVCNVAGHVARQCPKAGLNDGGGFRDGGAFRDVICRTCNQPGHISRDCVGVVICNNCGGRGHMAYECPSGRYMDR-GMRRY 180 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 11
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BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0091568 ID=g.barbadense_cottongen_reftransV1_0091568; Name=g.barbadense_cottongen_reftransV1_0091568; organism=Gossypium barbadense; type=contig; length=2239bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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