g.barbadense_cottongen_reftransV1_0091568, g.barbadense_cottongen_reftransV1_0091568 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0091568
Unique Nameg.barbadense_cottongen_reftransV1_0091568
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2239
Homology
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: GIS2_YEAST (Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.668e-17
Identity = 59/163 (36.20%), Postives = 84/163 (51.53%), Query Frame = 1
Query: 1513 STTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEP---------VCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSA 1974
            S   C+ C + GHLA  C  E +C    K GH+  DC  PR    + + C NC + GH  ++CT ++ C NC++TGH++R+C  EP          C  C    H+A+ C K      I G    + C  CGQ GH+S+DC +  +C NC   GH+  +CP A
Sbjct:    2 SQKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTV--EFKQCYNCGETGHVRSECTVQR-CFNCNQTGHISREC-PEPKKTSRFSKVSCYKCGGPNHMAKDCMK---EDGISG----LKCYTCGQAGHMSRDCQNDRLCYNCNETGHISKDCPKA 153          

HSP 2 Score: 82.0333 bits (201), Expect = 2.624e-16
Identity = 54/146 (36.99%), Postives = 76/146 (52.05%), Query Frame = 1
Query: 1573 EPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNE-----KACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCF-----SIVICSNCGGRGHLHYECPSARM 1980
            +  C + GK+GHLA DC          RLC NC K GH   DCT       K C NC +TGH+  +C  +  C  CN +GH++R+C + K +S    RF  + C  CG P H+++DC      S + C  CG  GH+  +C + R+
Sbjct:    3 QKACYVCGKIGHLAEDC-------DSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQ-RCFNCNQTGHISRECPEPKKTS----RFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQNDRL 136          

HSP 3 Score: 59.6918 bits (143), Expect = 6.797e-9
Identity = 36/95 (37.89%), Postives = 49/95 (51.58%), Query Frame = 1
Query: 1705 NEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDR 1989
            ++KAC  C K GHLA DC +E +C  CN  GHV   C   +        F+   C NCG+ GH+  +C ++  C NC   GH+  ECP  +   R
Sbjct:    2 SQKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTV-----EFKQ--CYNCGETGHVRSEC-TVQRCFNCNQTGHISRECPEPKKTSR 88          

HSP 4 Score: 57.7658 bits (138), Expect = 3.441e-8
Identity = 34/98 (34.69%), Postives = 53/98 (54.08%), Query Frame = 1
Query: 1492 HIAVECNSTTICWNCKEPGHLAGQCPYEP---------VCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDC 1758
            H+  EC +   C+NC + GH++ +CP EP          C   G   H+A+DC+  +        C  C +AGH   DC N++ C NC++TGH+++DC
Sbjct:   57 HVRSEC-TVQRCFNCNQTGHISRECP-EPKKTSRFSKVSCYKCGGPNHMAKDCM--KEDGISGLKCYTCGQAGHMSRDCQNDRLCYNCNETGHISKDC 150          
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_RAT (Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.329e-13
Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 1
Query: 1522 ICWNCKEPGHLAGQCP-YEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC--TNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC 1908
            IC+ C E GHLA  C   E  C   G+ GH+A+DC  P+      + C NC K GH   DC   +E+ C +C + GH+ +DC  +  C  C  +GHVA  C+K            ++ C  CG+ GH++++C
Sbjct:   53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTS----------EVNCYRCGESGHLAREC 171          

HSP 2 Score: 57.7658 bits (138), Expect = 3.671e-8
Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 1
Query: 1717 CNNCHKTGHLARDCH-NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYECPSARMY 1983
            C  C ++GHLA+DC   E  C  C   GH+A+ C + K       R R+  C NCG+PGH+++DC       C +CG  GH+  +C   + Y
Sbjct:   54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPK-------REREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCY 138          
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_PONAB (Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.329e-13
Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 1
Query: 1522 ICWNCKEPGHLAGQCP-YEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC--TNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC 1908
            IC+ C E GHLA  C   E  C   G+ GH+A+DC  P+      + C NC K GH   DC   +E+ C +C + GH+ +DC  +  C  C  +GHVA  C+K            ++ C  CG+ GH++++C
Sbjct:   53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTS----------EVNCYRCGESGHLAREC 171          

HSP 2 Score: 57.7658 bits (138), Expect = 3.671e-8
Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 1
Query: 1717 CNNCHKTGHLARDCH-NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYECPSARMY 1983
            C  C ++GHLA+DC   E  C  C   GH+A+ C + K       R R+  C NCG+PGH+++DC       C +CG  GH+  +C   + Y
Sbjct:   54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPK-------REREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCY 138          
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_HUMAN (Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.329e-13
Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 1
Query: 1522 ICWNCKEPGHLAGQCP-YEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC--TNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC 1908
            IC+ C E GHLA  C   E  C   G+ GH+A+DC  P+      + C NC K GH   DC   +E+ C +C + GH+ +DC  +  C  C  +GHVA  C+K            ++ C  CG+ GH++++C
Sbjct:   53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTS----------EVNCYRCGESGHLAREC 171          

HSP 2 Score: 57.7658 bits (138), Expect = 3.671e-8
Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 1
Query: 1717 CNNCHKTGHLARDCH-NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYECPSARMY 1983
            C  C ++GHLA+DC   E  C  C   GH+A+ C + K       R R+  C NCG+PGH+++DC       C +CG  GH+  +C   + Y
Sbjct:   54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPK-------REREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCY 138          
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: HEXP_LEIMA (DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.377e-13
Identity = 62/218 (28.44%), Postives = 86/218 (39.45%), Query Frame = 1
Query: 1492 HIAVEC--------NSTTICWNCKEPGHLAGQCPYEP--------VCNM*GKMGHLARDCLNPRLP-AHDARLCNNCYKAGHFVADC------------------------TNEKACNNCHKTGHLARDCHN---------EPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIV-------ICSNCGGRGHLHYECPSA 1974
            H A EC          +T C+ C E GH++ +CP E          C   G+ GH++RDC N   P A     C  C + GH   DC                        + ++ C  C   GH++RDC N         +  C  C  +GH++R C   +      G   D  C  CG+ GH+S++C S          C  CG  GH+  ECP A
Sbjct:   26 HYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAG---DRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEA 240          

HSP 2 Score: 75.0998 bits (183), Expect = 1.936e-13
Identity = 63/205 (30.73%), Postives = 80/205 (39.02%), Query Frame = 1
Query: 1510 NSTTICWNCKEPGHLAGQCPY--------EPVCNM*GKMGHLARDCLNP-RLPAHDARLCNNCYKAGHFVADCTNEK--------ACNNCHKTGHLARDC------------------------HNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC---------FSIVICSNCGGRGHLHYECPSA 1974
             S+T C NC + GH A +CP            C   G+ GH++R+C N  R  A  A  C  C +AGH   DC N           C  C + GHL+RDC                          +  C  C  +GH++R C   +      G   D  C  CG  GHIS+DC              C  CG  GH+  ECPSA
Sbjct:   13 ESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAG---DRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSA 214          

HSP 3 Score: 70.0922 bits (170), Expect = 7.491e-12
Identity = 57/206 (27.67%), Postives = 80/206 (38.83%), Query Frame = 1
Query: 1522 ICWNCKEPGHLAGQCPYEP--------VCNM*GKMGHLARDCLNPRLPAHDA-----------------RLCNNCYKAGHFVADCTN---------EKACNNCHKTGHLARDCHN---------EPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIV------------ICSNCGGRGHLHYECPSA 1974
             C+ C E GH++  CP            C   G+ GHL+RDC + +  +                    R C  C  AGH   DC N         ++ C  C   GH++RDC N         +  C  C  SGH++R+C     +        D  C  CG+PGHIS++C                 C  CG  GH+  +CPS+
Sbjct:   71 TCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSG-----DRACYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271          
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_BOVIN (Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.001e-13
Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 1
Query: 1522 ICWNCKEPGHLAGQCP-YEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC--TNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC 1908
            IC+ C E GHLA  C   E  C   G+ GH+A+DC  P+      + C NC K GH   DC   +E+ C +C + GH+ +DC  +  C  C  +GHVA  C+K            ++ C  CG+ GH++++C
Sbjct:   46 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTS----------EVNCYRCGESGHLAREC 164          

HSP 2 Score: 70.4774 bits (171), Expect = 2.552e-12
Identity = 61/182 (33.52%), Postives = 76/182 (41.76%), Query Frame = 1
Query: 1513 STTICWNCKEPGHLAGQCPYE----------------------PVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTN-----EKACNNCHKTGHLARDCH--NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYEC 1965
            S+  C+ C   GH A +CP                         +C   G+ GHLA+DC        DA  C NC + GH   DC       E+ C NC K GHLARDC   +E  C  C   GH+ + C K K             C  CG+ GH++ +C   S V C  CG  GHL  EC
Sbjct:    2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC----DLQEDA--CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK-------------CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 164          
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_CHICK (Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.732e-13
Identity = 59/183 (32.24%), Postives = 76/183 (41.53%), Query Frame = 1
Query: 1513 STTICWNCKEPGHLAGQCPYE-----------------------PVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTN-----EKACNNCHKTGHLARDCH--NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYEC 1965
            S+  C+ C   GH A +CP                          +C   G+ GHLA+DC        + + C NC + GH   DC       E+ C NC K GHLARDC   +E  C  C   GH+ + C K K             C  CG+ GH++ +C   S V C  CG  GHL  EC
Sbjct:    2 SSNECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDC-----DLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK-------------CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 166          

HSP 2 Score: 56.9954 bits (136), Expect = 6.532e-8
Identity = 41/134 (30.60%), Postives = 64/134 (47.76%), Query Frame = 1
Query: 1594 GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDC--HNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYECPSARMY 1983
            G+ GH AR+C  P        + +       F++  +    C  C ++GHLA+DC    +  C  C   GH+A+ C + K       R R+  C NCG+PGH+++DC       C +CG  GH+  +C   + Y
Sbjct:   10 GRTGHWAREC--PTGIGRGRGMRSRGRAGFQFMSS-SLPDICYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPK-------REREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCY 133          
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: BYR3_SCHPO (Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=byr3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.890e-13
Identity = 52/144 (36.11%), Postives = 66/144 (45.83%), Query Frame = 1
Query: 1576 PVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCT---NEKACNNCHKTGHLARDCHNEP------VCNICNISGHVARQCAKWKLSSD--IGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSA 1974
            P C   G+ GH AR+C           +C NC + GH  ++CT    EK C  C   GHL RDC + P       C  C   GH+AR C      S    GG   ++ C  CG  GH ++DC   V C +CG  GH  +EC  A
Sbjct:   17 PRCYNCGENGHQARECT-------KGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRSFECQQA 153          

HSP 2 Score: 70.8626 bits (172), Expect = 2.318e-12
Identity = 57/162 (35.19%), Postives = 70/162 (43.21%), Query Frame = 1
Query: 1489 SHIAVECNSTTICWNCKEPGHLAGQCP---YEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC-TNEKA-------------CNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVI 1923
             H A EC   +IC+NC + GH A +C     E  C   G  GHL RDC +   P   A  C  C + GH   DC TN +              C  C   GH ARDC     C  C   GH + +C   + +SD         C  C QPGHI+ +C S VI
Sbjct:   26 GHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAE-CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRSFEC---QQASD------GQLCYKCNQPGHIAVNCTSPVI 177          
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_MOUSE (Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 3.974e-13
Identity = 46/133 (34.59%), Postives = 69/133 (51.88%), Query Frame = 1
Query: 1522 ICWNCKEPGHLAGQCPYE--PVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC--TNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC 1908
            IC+ C E GHLA  C  +    C   G+ GH+A+DC  P+      + C NC K GH   DC   +E+ C +C + GH+ +DC  +  C  C  +GHVA  C+K            ++ C  CG+ GH++++C
Sbjct:   53 ICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTS----------EVNCYRCGESGHLAREC 172          

HSP 2 Score: 70.8626 bits (172), Expect = 2.038e-12
Identity = 59/189 (31.22%), Postives = 75/189 (39.68%), Query Frame = 1
Query: 1513 STTICWNCKEPGHLAGQCPYE-----------------------------PVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTN-----EKACNNCHKTGHLARDCH--NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYEC 1965
            S+  C+ C   GH A +CP                                +C   G+ GHLA+DC        +   C NC + GH   DC       E+ C NC K GHLARDC   +E  C  C   GH+ + C K K             C  CG+ GH++ +C   S V C  CG  GHL  EC
Sbjct:    2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDC-----DLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK-------------CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 172          

HSP 3 Score: 56.9954 bits (136), Expect = 7.261e-8
Identity = 33/93 (35.48%), Postives = 49/93 (52.69%), Query Frame = 1
Query: 1717 CNNCHKTGHLARDC--HNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYECPSARMY 1983
            C  C ++GHLA+DC    +  C  C   GH+A+ C + K       R R+  C NCG+PGH+++DC       C +CG  GH+  +C   + Y
Sbjct:   54 CYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPK-------REREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCY 139          
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CSP1_ARATH (Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.093e-11
Identity = 53/170 (31.18%), Postives = 68/170 (40.00%), Query Frame = 1
Query: 1525 CWNCKEPGHLAGQCPY-------------EPVCNM*GKMGHLARDCLNPRLPAHDARL--------CNNCYKAGHFVADCTNEKACNN-------------CHKTGHLARDC--HNEPV--CNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIV 1920
            C+NC + GH A  C                  C   G +GH+ARDC    +   D R         C  C   GHF  DCT + A  N             C   GH+ARDC    +P   C  C  SGH+AR C +       GG   D  C  CG+ GH +++C S+ 
Sbjct:  134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGS----GGGGNDNACYKCGKEGHFARECSSVA 299          

HSP 2 Score: 57.3806 bits (137), Expect = 1.565e-7
Identity = 48/163 (29.45%), Postives = 65/163 (39.88%), Query Frame = 1
Query: 1594 GKMGHLARDCLNPRLPAHDARL------CNNCYKAGHFVADCTN-------------EKACNNCHKTGHLARDCHNEPV---------------CNICNISGHVARQCAKWKLSSDI-GGRFRDIFCRNCGQPGHISQDCFS----IVICSNCGGRGHLHYEC 1965
            G++GH+++DC          R       C NC   GHF  DCT+                C  C   GH+ARDC  + V               C  C   GH AR C +   + ++  G      C +CG  GHI++DC +       C  CGG GHL  +C
Sbjct:  106 GELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDC 268          
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: C5WV15_SORBI (Putative uncharacterized protein Sb01g003240 OS=Sorghum bicolor GN=Sb01g003240 PE=4 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 5.935e-62
Identity = 106/176 (60.23%), Postives = 131/176 (74.43%), Query Frame = 1
Query: 1483 LCSHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDI-GGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007
            L  H A EC S TICWNCKE GH+A +C  E +C+   K GHLARDC        + +LCN C+K GHF  DCTNE+ACNNC + GH+AR+C N+PVCN+CN+SGHVAR C K  L+S+I GG FRDI CR CGQPGHIS++C + +IC  CGGRGH+ YECPSAR++DR G+RR+
Sbjct:   87 LPGHFAAECTSQTICWNCKESGHIASECKNEALCHTCNKTGHLARDCP---TSGANVKLCNKCFKPGHFAVDCTNERACNNCRQPGHIARECKNDPVCNLCNVSGHVARVCPKTTLASEIQGGPFRDILCRICGQPGHISRNCIATIICDTCGGRGHMSYECPSARIFDR-GLRRF 258          
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: D3YBE9_TRIRP (Zinc knuckle (CcHc-type) family protein OS=Trifolium repens PE=4 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 8.985e-62
Identity = 109/186 (58.60%), Postives = 131/186 (70.43%), Query Frame = 1
Query: 1483 LCSHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSD----------IGGRFRDIFCRNCGQPGHISQDCFS-IVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007
            L  HIA EC++ ++CWNCKEPGH+A  CP E +C+  GK GH AR+C  P +P  D RLC+NCYK GH   +CTNEKACNNC KTGHLARDC N+P+CN+CN+SGHVARQC K  +  D           GG +RD+ CRNC Q GH+S+DC   ++IC NCGGRGHL YECPS R  DR   RRY
Sbjct:   71 LPGHIASECSTKSVCWNCKEPGHMANSCPNEGICHTCGKTGHRARECSAPSMPPGDLRLCHNCYKQGHIAVECTNEKACNNCRKTGHLARDCPNDPICNVCNVSGHVARQCPKSNVIGDHSGRGSFRGAGGGGYRDVMCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFVDRYPSRRY 256          

HSP 2 Score: 82.4185 bits (202), Expect = 5.940e-14
Identity = 49/151 (32.45%), Postives = 73/151 (48.34%), Query Frame = 1
Query: 1519 TICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPS 1971
             +C NCK PGH A +CP                          +  +C+NC   GH  ++C+ +  C NC + GH+A  C NE +C+ C  +GH AR+C+   +     G  R   C NC + GHI+ +C +   C+NC   GHL  +CP+
Sbjct:   45 NLCKNCKRPGHYARECP--------------------------NVAVCHNCGLPGHIASECSTKSVCWNCKEPGHMANSCPNEGICHTCGKTGHRARECSAPSMPP---GDLR--LCHNCYKQGHIAVECTNEKACNNCRKTGHLARDCPN 164          
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: B9H0X4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s16895g PE=4 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 1.955e-61
Identity = 106/180 (58.89%), Postives = 129/180 (71.67%), Query Frame = 1
Query: 1483 LCSHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGR----FRDIFCRNCGQPGHISQDCFS-IVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007
            L  HIA EC + ++CWNC+EPGH+A  CP E +C+  GK GH A++C  P +P  D RLCNNCYK GH  ADCTN+KACNNC KTGHLAR+C NEP+CN+CN++GHVARQC K  +  D GG     ++DI CRNC Q GH+S+DC   ++IC NCGGRGH   ECPS RM DR   R Y
Sbjct:   75 LPGHIASECTTKSLCWNCREPGHMASNCPNEGICHTCGKAGHRAKECTAPPMPPGDLRLCNNCYKQGHIAADCTNDKACNNCRKTGHLARECPNEPICNMCNVAGHVARQCPKSNMLGDRGGMRSGGYQDIVCRNCHQYGHMSRDCMGPLMICHNCGGRGHRAIECPSGRMMDRYPQRFY 254          

HSP 2 Score: 86.2705 bits (212), Expect = 3.272e-15
Identity = 51/153 (33.33%), Postives = 74/153 (48.37%), Query Frame = 1
Query: 1513 STTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPS 1971
             + +C NCK PGH A +CP                          +  +C+NC   GH  ++CT +  C NC + GH+A +C NE +C+ C  +GH A++C    +     G  R   C NC + GHI+ DC +   C+NC   GHL  ECP+
Sbjct:   47 QSNLCKNCKRPGHYARECP--------------------------NVAICHNCGLPGHIASECTTKSLCWNCREPGHMASNCPNEGICHTCGKAGHRAKECTAPPMPP---GDLR--LCNNCYKQGHIAADCTNDKACNNCRKTGHLARECPN 168          
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: K4ADZ3_SETIT (Uncharacterized protein OS=Setaria italica GN=Si037100m.g PE=4 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 2.923e-61
Identity = 104/176 (59.09%), Postives = 131/176 (74.43%), Query Frame = 1
Query: 1483 LCSHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDI-GGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007
            L  H A EC S T+CWNCKE GH+A +C  E +C+   K GHLARDC        + +LCNNC+K GH   DCTNE+ACNNC + GH+AR+C N+PVCN+CN+SGHVAR C K  L+S+I GG FRDI CR CGQPGHIS++C + +IC  CGGRGH+ YECPSAR+++R G+RR+
Sbjct:   89 LPGHFAAECTSATVCWNCKESGHIATECKNEALCHTCNKTGHLARDCP---TSGSNVKLCNNCFKPGHIAVDCTNERACNNCRQPGHIARECKNDPVCNLCNVSGHVARSCPKTTLASEIQGGPFRDILCRICGQPGHISRNCMATIICDTCGGRGHMSYECPSARIFNR-GLRRF 260          

HSP 2 Score: 89.3521 bits (220), Expect = 3.260e-16
Identity = 53/148 (35.81%), Postives = 72/148 (48.65%), Query Frame = 1
Query: 1522 ICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYEC 1965
            +C NC+ PGH A  CP                           A  CNNC   GHF A+CT+   C NC ++GH+A +C NE +C+ CN +GH+AR C     +  +        C NC +PGHI+ DC +   C+NC   GH+  EC
Sbjct:   64 MCKNCRRPGHYAKDCP--------------------------SAATCNNCNLPGHFAAECTSATVCWNCKESGHIATECKNEALCHTCNKTGHLARDCPTSGSNVKL--------CNNCFKPGHIAVDCTNERACNNCRQPGHIAREC 177          
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: A0A067E490_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024887mg PE=4 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.797e-61
Identity = 113/195 (57.95%), Postives = 131/195 (67.18%), Query Frame = 1
Query: 1483 LCSHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGR-------------------FRDIFCRNCGQPGHISQDCFS-IVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007
            L  HIA EC +  +CWNC+EPGH+AG CP E +C+  GK GH ARDC  P LP  D RLCNNCYK GHF ADCTN+KACNNC KTGHLARDC N+P+CN+CN+SGHVAR C K   S  +G R                   +RDI CRNC Q GH+S+DC   +++C NCGGRGHL YECPS R  DR   RRY
Sbjct:   71 LPGHIASECTTKALCWNCREPGHMAGNCPNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKACNNCRKTGHLARDCPNDPICNLCNVSGHVARHCPK---SGGLGDRYSGGSGARGSGGSGARGGGYRDIVCRNCQQLGHMSRDCMGPLMVCHNCGGRGHLAYECPSGRFLDRY-SRRY 261          

HSP 2 Score: 83.9593 bits (206), Expect = 1.889e-14
Identity = 51/154 (33.12%), Postives = 73/154 (47.40%), Query Frame = 1
Query: 1510 NSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPS 1971
            + + +C NCK PGH A +CP                          +  +C+NC   GH  ++CT +  C NC + GH+A +C NE +C+ C  +GH AR C    L     G  R   C NC + GH + DC +   C+NC   GHL  +CP+
Sbjct:   42 SQSNLCKNCKRPGHFARECP--------------------------NVAICHNCGLPGHIASECTTKALCWNCREPGHMAGNCPNEGICHTCGKAGHRARDCTAPPLPP---GDLR--LCNNCYKQGHFAADCTNDKACNNCRKTGHLARDCPN 164          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 11
Match NameE-valueIdentityDescription
GIS2_YEAST2.668e-1736.20Zinc finger protein GIS2 OS=Saccharomyces cerevisi... [more]
CNBP_RAT1.329e-1335.61Cellular nucleic acid-binding protein OS=Rattus no... [more]
CNBP_PONAB1.329e-1335.61Cellular nucleic acid-binding protein OS=Pongo abe... [more]
CNBP_HUMAN1.329e-1335.61Cellular nucleic acid-binding protein OS=Homo sapi... [more]
HEXP_LEIMA1.377e-1328.44DNA-binding protein HEXBP OS=Leishmania major GN=H... [more]
CNBP_BOVIN2.001e-1335.61Cellular nucleic acid-binding protein OS=Bos tauru... [more]
CNBP_CHICK2.732e-1332.24Cellular nucleic acid-binding protein OS=Gallus ga... [more]
BYR3_SCHPO2.890e-1336.11Cellular nucleic acid-binding protein homolog OS=S... [more]
CNBP_MOUSE3.974e-1334.59Cellular nucleic acid-binding protein OS=Mus muscu... [more]
CSP1_ARATH7.093e-1131.18Cold shock protein 1 OS=Arabidopsis thaliana GN=CS... [more]

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BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
C5WV15_SORBI5.935e-6260.23Putative uncharacterized protein Sb01g003240 OS=So... [more]
D3YBE9_TRIRP8.985e-6258.60Zinc knuckle (CcHc-type) family protein OS=Trifoli... [more]
B9H0X4_POPTR1.955e-6158.89Uncharacterized protein OS=Populus trichocarpa GN=... [more]
K4ADZ3_SETIT2.923e-6159.09Uncharacterized protein OS=Setaria italica GN=Si03... [more]
A0A067E490_CITSI3.797e-6157.95Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 58..74
e-value: 0.064
score: 18.6
coord: 39..55
e-value: 0.0046
score: 25.6
coord: 89..105
e-value: 0.0085
score: 24.0
coord: 108..124
e-value: 0.02
score: 21.7
coord: 20..36
e-value: 0.02
score: 21.7
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 85..124
e-value: 1.0E-11
score: 43.9
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 2..37
e-value: 2.9E-9
score: 36.3
coord: 39..74
e-value: 1.7E-9
score: 37.1
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 39..53
e-value: 0.002
score: 18.0
coord: 90..104
e-value: 5.1E-7
score: 29.4
coord: 20..36
e-value: 0.0042
score: 17.0
coord: 58..74
e-value: 0.0018
score: 18.2
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 90..103
score: 10.114
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 109..124
score: 9.109
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 40..53
score: 9.405
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 14..56
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 80..126
NoneNo IPR availablePFAMPF13917zf-CCHC_3coord: 108..128
e-value: 1.1E-4
score: 22.0
NoneNo IPR availablePANTHERPTHR23002:SF65SUBFAMILY NOT NAMEDcoord: 2..129
NoneNo IPR availablePANTHERPTHR23002ZINC FINGER CCHC DOMAIN CONTAINING PROTEINcoord: 2..129

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0091568 ID=g.barbadense_cottongen_reftransV1_0091568; Name=g.barbadense_cottongen_reftransV1_0091568; organism=Gossypium barbadense; type=contig; length=2239bp
GCTAGAGAAAGAAGAAGGGAAATCGCTGAGCTTTCAAAGGCTCATCGGCA
GAGGTATAACCCCAAAAGAGTTGTTCGATTTGATTGTCTTTGGGATAACT
TGGAAGTATTTATGTTAGTTGGGGTTCAAGTTGGTGTTTTTTGTGTGAGA
TAGTAACCTGTGTGTTTTGTGCTTTTTATGAATTTTGTAAACAAATAATT
CACCATAAGTAGTGCTAGCATGCTTTAGAGTTTTTGTTTTTATCAATCAA
TTATGTAGAAGGGAGAACTCTTTAGTTAAATACTAACAAAAACTATTGAA
GATAATGCTAAATAAACCTGTCGATGCCTTTTGTATATCTTGTCATAGGA
AAAAATGTATATCATGATTATGTTCCTTGGACTAGGGTGAGGGTCGGATG
TATGTTTATAACATGGTTATGTTCAATTTTTTTAAGTTTTTCTATGTATT
GAAGGGTTCTTGGAGGGTCATATTCTTGTACCTTCGCTTGGATATGTGTC
GGCTACTAGTGTTAGACATGAGTATTTCAAGAAAAATCAAGAGTGGGAGC
AACATGGCCATAGCCAGCTAGAAGGTTAAGGAATAGAGACATGGAATGCA
AGGATCAAGGGTATTGCACTACTCGAACTACCGTTTCAATATGCTCTCTG
CAACTGTTTCTGGTTGACTGTTAGGGAACTAGTTCAAAGTTTTTAGATTG
TCATACCGTATATTGTTAAGGATCTCTCCATTTTGCTGCTGAAGGTAACA
ACGGCACGGTCCCCAAGTTCAATACTTCTATGCTGCTAGAATACTTGGTC
GTTAGAAAGCAAACACATCTCGGACGGATATACGAGAATAATGTTTTATG
ATGTAGTTCCTAGTTGAACACTTGAACTGGGAATTTGCTTGCTTCATTTA
GTTATTCACGAGCTCTTGATTTCTAGGCCATGTTCACTTGTCAGTTTCAC
TTGCCACGCCTTACTTCGGTTATAATCGTGTAGGAGTTGAGGTGGTTTGC
TTGAATTTTTTAGGTCTAGTGTTCCCTATTTCTAGTTTTGTTCATGTGTT
AAAGGGTGCCATTAAGGCCTTACGGGAGGATACAAATATTAAGAATATGT
CATTTCGGAAAAGGGACCGGTTCATGGAACCTGCTGGAGGAGACTAGTCT
GGTTATACATCATAAAGCTTGAGGTCATAAACTATCTTCAATCCCGGCAT
CCTTTATTTTTGCTACGGTAGAATTTGTGGTTCCAACTTTTGAGGCTTCG
ATTTAGTGCTACGGTAGATTTGAGGCTTGGGCTTATACTAGCTGCTTTTC
ACATTGTTGACCTTTTCTCCTTTTTGAGAAATATGCTTTTCTTTGTTTCT
GTCATTTCCTCGTTTAAATTTTGTAGAACCTTTCACTTAAGCCAAAAGAA
AAAAAGGTATAACCTTCCATTTCATATTTGTTCGTTCTCAGACCATGAAA
TTCGTTAATGATCTGTTTTCTTCTCTTCGTTTCTTTGTAGTCACATTGCT
GTCGAGTGCAACTCAACCACTATATGTTGGAACTGTAAGGAGCCAGGGCA
TCTTGCTGGACAATGCCCCTATGAGCCTGTTTGCAATATGTGAGGTAAGA
TGGGTCACTTAGCTCGAGATTGCCTAAATCCCAGACTTCCGGCTCATGAT
GCAAGACTCTGCAACAACTGCTACAAGGCAGGTCACTTTGTCGCCGACTG
TACGAATGAGAAGGCTTGCAATAACTGTCATAAAACCGGTCACCTTGCTC
GTGACTGCCATAACGAGCCAGTTTGCAATATCTGCAATATATCAGGTCAT
GTAGCCAGACAATGTGCCAAGTGGAAACTGTCATCAGACATAGGAGGCCG
CTTCCGGGACATTTTTTGCCGCAACTGTGGCCAGCCAGGCCATATTAGTC
AGGACTGCTTTTCCATCGTCATATGCAGTAACTGTGGTGGAAGGGGTCAC
CTTCATTACGAGTGCCCTTCAGCAAGGATGTATGACCGCAGTGGCGTACG
TAGGTATTAACTACTTAACTAACCAACTTTTATAGGATTCATTCATTAGC
ATCCCTTTGTTTAACTCATCTTTATAATTTGATTTTCAATTGATTTATTC
TTGAAGTGATACGCCATTGTTGTTCTGTAATTAAGGCTGCAGTTTCCTCT
GCCTTGAAAATTGTCTTTTTTTTCTTCAGTGGTGAATATTGGCATTAAAT
TTTGGAGGGAATACCTAAAATTTTAGGAAATTTGAGGGA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding