g.barbadense_cottongen_reftransV1_0091568, g.barbadense_cottongen_reftransV1_0091568 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: GIS2_YEAST (Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIS2 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.668e-17 Identity = 59/163 (36.20%), Postives = 84/163 (51.53%), Query Frame = 1 Query: 1513 STTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEP---------VCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSA 1974 S C+ C + GHLA C E +C K GH+ DC PR + + C NC + GH ++CT ++ C NC++TGH++R+C EP C C H+A+ C K I G + C CGQ GH+S+DC + +C NC GH+ +CP A Sbjct: 2 SQKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTV--EFKQCYNCGETGHVRSECTVQR-CFNCNQTGHISREC-PEPKKTSRFSKVSCYKCGGPNHMAKDCMK---EDGISG----LKCYTCGQAGHMSRDCQNDRLCYNCNETGHISKDCPKA 153 HSP 2 Score: 82.0333 bits (201), Expect = 2.624e-16 Identity = 54/146 (36.99%), Postives = 76/146 (52.05%), Query Frame = 1 Query: 1573 EPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNE-----KACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCF-----SIVICSNCGGRGHLHYECPSARM 1980 + C + GK+GHLA DC RLC NC K GH DCT K C NC +TGH+ +C + C CN +GH++R+C + K +S RF + C CG P H+++DC S + C CG GH+ +C + R+ Sbjct: 3 QKACYVCGKIGHLAEDC-------DSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQ-RCFNCNQTGHISRECPEPKKTS----RFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQNDRL 136 HSP 3 Score: 59.6918 bits (143), Expect = 6.797e-9 Identity = 36/95 (37.89%), Postives = 49/95 (51.58%), Query Frame = 1 Query: 1705 NEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDR 1989 ++KAC C K GHLA DC +E +C CN GHV C + F+ C NCG+ GH+ +C ++ C NC GH+ ECP + R Sbjct: 2 SQKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTV-----EFKQ--CYNCGETGHVRSEC-TVQRCFNCNQTGHISRECPEPKKTSR 88 HSP 4 Score: 57.7658 bits (138), Expect = 3.441e-8 Identity = 34/98 (34.69%), Postives = 53/98 (54.08%), Query Frame = 1 Query: 1492 HIAVECNSTTICWNCKEPGHLAGQCPYEP---------VCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDC 1758 H+ EC + C+NC + GH++ +CP EP C G H+A+DC+ + C C +AGH DC N++ C NC++TGH+++DC Sbjct: 57 HVRSEC-TVQRCFNCNQTGHISRECP-EPKKTSRFSKVSCYKCGGPNHMAKDCM--KEDGISGLKCYTCGQAGHMSRDCQNDRLCYNCNETGHISKDC 150
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_RAT (Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.329e-13 Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 1 Query: 1522 ICWNCKEPGHLAGQCP-YEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC--TNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC 1908 IC+ C E GHLA C E C G+ GH+A+DC P+ + C NC K GH DC +E+ C +C + GH+ +DC + C C +GHVA C+K ++ C CG+ GH++++C Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTS----------EVNCYRCGESGHLAREC 171 HSP 2 Score: 57.7658 bits (138), Expect = 3.671e-8 Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 1 Query: 1717 CNNCHKTGHLARDCH-NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYECPSARMY 1983 C C ++GHLA+DC E C C GH+A+ C + K R R+ C NCG+PGH+++DC C +CG GH+ +C + Y Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPK-------REREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCY 138
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_PONAB (Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.329e-13 Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 1 Query: 1522 ICWNCKEPGHLAGQCP-YEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC--TNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC 1908 IC+ C E GHLA C E C G+ GH+A+DC P+ + C NC K GH DC +E+ C +C + GH+ +DC + C C +GHVA C+K ++ C CG+ GH++++C Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTS----------EVNCYRCGESGHLAREC 171 HSP 2 Score: 57.7658 bits (138), Expect = 3.671e-8 Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 1 Query: 1717 CNNCHKTGHLARDCH-NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYECPSARMY 1983 C C ++GHLA+DC E C C GH+A+ C + K R R+ C NCG+PGH+++DC C +CG GH+ +C + Y Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPK-------REREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCY 138
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_HUMAN (Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.329e-13 Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 1 Query: 1522 ICWNCKEPGHLAGQCP-YEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC--TNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC 1908 IC+ C E GHLA C E C G+ GH+A+DC P+ + C NC K GH DC +E+ C +C + GH+ +DC + C C +GHVA C+K ++ C CG+ GH++++C Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTS----------EVNCYRCGESGHLAREC 171 HSP 2 Score: 57.7658 bits (138), Expect = 3.671e-8 Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 1 Query: 1717 CNNCHKTGHLARDCH-NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYECPSARMY 1983 C C ++GHLA+DC E C C GH+A+ C + K R R+ C NCG+PGH+++DC C +CG GH+ +C + Y Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPK-------REREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCY 138
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: HEXP_LEIMA (DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.377e-13 Identity = 62/218 (28.44%), Postives = 86/218 (39.45%), Query Frame = 1 Query: 1492 HIAVEC--------NSTTICWNCKEPGHLAGQCPYEP--------VCNM*GKMGHLARDCLNPRLP-AHDARLCNNCYKAGHFVADC------------------------TNEKACNNCHKTGHLARDCHN---------EPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIV-------ICSNCGGRGHLHYECPSA 1974 H A EC +T C+ C E GH++ +CP E C G+ GH++RDC N P A C C + GH DC + ++ C C GH++RDC N + C C +GH++R C + G D C CG+ GH+S++C S C CG GH+ ECP A Sbjct: 26 HYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAG---DRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEA 240 HSP 2 Score: 75.0998 bits (183), Expect = 1.936e-13 Identity = 63/205 (30.73%), Postives = 80/205 (39.02%), Query Frame = 1 Query: 1510 NSTTICWNCKEPGHLAGQCPY--------EPVCNM*GKMGHLARDCLNP-RLPAHDARLCNNCYKAGHFVADCTNEK--------ACNNCHKTGHLARDC------------------------HNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC---------FSIVICSNCGGRGHLHYECPSA 1974 S+T C NC + GH A +CP C G+ GH++R+C N R A A C C +AGH DC N C C + GHL+RDC + C C +GH++R C + G D C CG GHIS+DC C CG GH+ ECPSA Sbjct: 13 ESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAG---DRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSA 214 HSP 3 Score: 70.0922 bits (170), Expect = 7.491e-12 Identity = 57/206 (27.67%), Postives = 80/206 (38.83%), Query Frame = 1 Query: 1522 ICWNCKEPGHLAGQCPYEP--------VCNM*GKMGHLARDCLNPRLPAHDA-----------------RLCNNCYKAGHFVADCTN---------EKACNNCHKTGHLARDCHN---------EPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIV------------ICSNCGGRGHLHYECPSA 1974 C+ C E GH++ CP C G+ GHL+RDC + + + R C C AGH DC N ++ C C GH++RDC N + C C SGH++R+C + D C CG+PGHIS++C C CG GH+ +CPS+ Sbjct: 71 TCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSG-----DRACYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_BOVIN (Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.001e-13 Identity = 47/132 (35.61%), Postives = 69/132 (52.27%), Query Frame = 1 Query: 1522 ICWNCKEPGHLAGQCP-YEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC--TNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC 1908 IC+ C E GHLA C E C G+ GH+A+DC P+ + C NC K GH DC +E+ C +C + GH+ +DC + C C +GHVA C+K ++ C CG+ GH++++C Sbjct: 46 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTS----------EVNCYRCGESGHLAREC 164 HSP 2 Score: 70.4774 bits (171), Expect = 2.552e-12 Identity = 61/182 (33.52%), Postives = 76/182 (41.76%), Query Frame = 1 Query: 1513 STTICWNCKEPGHLAGQCPYE----------------------PVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTN-----EKACNNCHKTGHLARDCH--NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYEC 1965 S+ C+ C GH A +CP +C G+ GHLA+DC DA C NC + GH DC E+ C NC K GHLARDC +E C C GH+ + C K K C CG+ GH++ +C S V C CG GHL EC Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC----DLQEDA--CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK-------------CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 164
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_CHICK (Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 2.732e-13 Identity = 59/183 (32.24%), Postives = 76/183 (41.53%), Query Frame = 1 Query: 1513 STTICWNCKEPGHLAGQCPYE-----------------------PVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTN-----EKACNNCHKTGHLARDCH--NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYEC 1965 S+ C+ C GH A +CP +C G+ GHLA+DC + + C NC + GH DC E+ C NC K GHLARDC +E C C GH+ + C K K C CG+ GH++ +C S V C CG GHL EC Sbjct: 2 SSNECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDC-----DLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK-------------CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 166 HSP 2 Score: 56.9954 bits (136), Expect = 6.532e-8 Identity = 41/134 (30.60%), Postives = 64/134 (47.76%), Query Frame = 1 Query: 1594 GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDC--HNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYECPSARMY 1983 G+ GH AR+C P + + F++ + C C ++GHLA+DC + C C GH+A+ C + K R R+ C NCG+PGH+++DC C +CG GH+ +C + Y Sbjct: 10 GRTGHWAREC--PTGIGRGRGMRSRGRAGFQFMSS-SLPDICYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPK-------REREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCY 133
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: BYR3_SCHPO (Cellular nucleic acid-binding protein homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=byr3 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 2.890e-13 Identity = 52/144 (36.11%), Postives = 66/144 (45.83%), Query Frame = 1 Query: 1576 PVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCT---NEKACNNCHKTGHLARDCHNEP------VCNICNISGHVARQCAKWKLSSD--IGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSA 1974 P C G+ GH AR+C +C NC + GH ++CT EK C C GHL RDC + P C C GH+AR C S GG ++ C CG GH ++DC V C +CG GH +EC A Sbjct: 17 PRCYNCGENGHQARECT-------KGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRSFECQQA 153 HSP 2 Score: 70.8626 bits (172), Expect = 2.318e-12 Identity = 57/162 (35.19%), Postives = 70/162 (43.21%), Query Frame = 1 Query: 1489 SHIAVECNSTTICWNCKEPGHLAGQCP---YEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC-TNEKA-------------CNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVI 1923 H A EC +IC+NC + GH A +C E C G GHL RDC + P A C C + GH DC TN + C C GH ARDC C C GH + +C + +SD C C QPGHI+ +C S VI Sbjct: 26 GHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAE-CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRSFEC---QQASD------GQLCYKCNQPGHIAVNCTSPVI 177
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CNBP_MOUSE (Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 3.974e-13 Identity = 46/133 (34.59%), Postives = 69/133 (51.88%), Query Frame = 1 Query: 1522 ICWNCKEPGHLAGQCPYE--PVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADC--TNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC 1908 IC+ C E GHLA C + C G+ GH+A+DC P+ + C NC K GH DC +E+ C +C + GH+ +DC + C C +GHVA C+K ++ C CG+ GH++++C Sbjct: 53 ICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKRERE--QCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC-TKVKCYRCGETGHVAINCSKTS----------EVNCYRCGESGHLAREC 172 HSP 2 Score: 70.8626 bits (172), Expect = 2.038e-12 Identity = 59/189 (31.22%), Postives = 75/189 (39.68%), Query Frame = 1 Query: 1513 STTICWNCKEPGHLAGQCPYE-----------------------------PVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTN-----EKACNNCHKTGHLARDCH--NEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYEC 1965 S+ C+ C GH A +CP +C G+ GHLA+DC + C NC + GH DC E+ C NC K GHLARDC +E C C GH+ + C K K C CG+ GH++ +C S V C CG GHL EC Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDC-----DLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK-------------CYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 172 HSP 3 Score: 56.9954 bits (136), Expect = 7.261e-8 Identity = 33/93 (35.48%), Postives = 49/93 (52.69%), Query Frame = 1 Query: 1717 CNNCHKTGHLARDC--HNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDC--FSIVICSNCGGRGHLHYECPSARMY 1983 C C ++GHLA+DC + C C GH+A+ C + K R R+ C NCG+PGH+++DC C +CG GH+ +C + Y Sbjct: 54 CYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPK-------REREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCY 139
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Match: CSP1_ARATH (Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.093e-11 Identity = 53/170 (31.18%), Postives = 68/170 (40.00%), Query Frame = 1 Query: 1525 CWNCKEPGHLAGQCPY-------------EPVCNM*GKMGHLARDCLNPRLPAHDARL--------CNNCYKAGHFVADCTNEKACNN-------------CHKTGHLARDC--HNEPV--CNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIV 1920 C+NC + GH A C C G +GH+ARDC + D R C C GHF DCT + A N C GH+ARDC +P C C SGH+AR C + GG D C CG+ GH +++C S+ Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGS----GGGGNDNACYKCGKEGHFARECSSVA 299 HSP 2 Score: 57.3806 bits (137), Expect = 1.565e-7 Identity = 48/163 (29.45%), Postives = 65/163 (39.88%), Query Frame = 1 Query: 1594 GKMGHLARDCLNPRLPAHDARL------CNNCYKAGHFVADCTN-------------EKACNNCHKTGHLARDCHNEPV---------------CNICNISGHVARQCAKWKLSSDI-GGRFRDIFCRNCGQPGHISQDCFS----IVICSNCGGRGHLHYEC 1965 G++GH+++DC R C NC GHF DCT+ C C GH+ARDC + V C C GH AR C + + ++ G C +CG GHI++DC + C CGG GHL +C Sbjct: 106 GELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDC 268
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: C5WV15_SORBI (Putative uncharacterized protein Sb01g003240 OS=Sorghum bicolor GN=Sb01g003240 PE=4 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 5.935e-62 Identity = 106/176 (60.23%), Postives = 131/176 (74.43%), Query Frame = 1 Query: 1483 LCSHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDI-GGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007 L H A EC S TICWNCKE GH+A +C E +C+ K GHLARDC + +LCN C+K GHF DCTNE+ACNNC + GH+AR+C N+PVCN+CN+SGHVAR C K L+S+I GG FRDI CR CGQPGHIS++C + +IC CGGRGH+ YECPSAR++DR G+RR+ Sbjct: 87 LPGHFAAECTSQTICWNCKESGHIASECKNEALCHTCNKTGHLARDCP---TSGANVKLCNKCFKPGHFAVDCTNERACNNCRQPGHIARECKNDPVCNLCNVSGHVARVCPKTTLASEIQGGPFRDILCRICGQPGHISRNCIATIICDTCGGRGHMSYECPSARIFDR-GLRRF 258
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: D3YBE9_TRIRP (Zinc knuckle (CcHc-type) family protein OS=Trifolium repens PE=4 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 8.985e-62 Identity = 109/186 (58.60%), Postives = 131/186 (70.43%), Query Frame = 1 Query: 1483 LCSHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSD----------IGGRFRDIFCRNCGQPGHISQDCFS-IVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007 L HIA EC++ ++CWNCKEPGH+A CP E +C+ GK GH AR+C P +P D RLC+NCYK GH +CTNEKACNNC KTGHLARDC N+P+CN+CN+SGHVARQC K + D GG +RD+ CRNC Q GH+S+DC ++IC NCGGRGHL YECPS R DR RRY Sbjct: 71 LPGHIASECSTKSVCWNCKEPGHMANSCPNEGICHTCGKTGHRARECSAPSMPPGDLRLCHNCYKQGHIAVECTNEKACNNCRKTGHLARDCPNDPICNVCNVSGHVARQCPKSNVIGDHSGRGSFRGAGGGGYRDVMCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFVDRYPSRRY 256 HSP 2 Score: 82.4185 bits (202), Expect = 5.940e-14 Identity = 49/151 (32.45%), Postives = 73/151 (48.34%), Query Frame = 1 Query: 1519 TICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPS 1971 +C NCK PGH A +CP + +C+NC GH ++C+ + C NC + GH+A C NE +C+ C +GH AR+C+ + G R C NC + GHI+ +C + C+NC GHL +CP+ Sbjct: 45 NLCKNCKRPGHYARECP--------------------------NVAVCHNCGLPGHIASECSTKSVCWNCKEPGHMANSCPNEGICHTCGKTGHRARECSAPSMPP---GDLR--LCHNCYKQGHIAVECTNEKACNNCRKTGHLARDCPN 164
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: B9H0X4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s16895g PE=4 SV=2) HSP 1 Score: 218.009 bits (554), Expect = 1.955e-61 Identity = 106/180 (58.89%), Postives = 129/180 (71.67%), Query Frame = 1 Query: 1483 LCSHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGR----FRDIFCRNCGQPGHISQDCFS-IVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007 L HIA EC + ++CWNC+EPGH+A CP E +C+ GK GH A++C P +P D RLCNNCYK GH ADCTN+KACNNC KTGHLAR+C NEP+CN+CN++GHVARQC K + D GG ++DI CRNC Q GH+S+DC ++IC NCGGRGH ECPS RM DR R Y Sbjct: 75 LPGHIASECTTKSLCWNCREPGHMASNCPNEGICHTCGKAGHRAKECTAPPMPPGDLRLCNNCYKQGHIAADCTNDKACNNCRKTGHLARECPNEPICNMCNVAGHVARQCPKSNMLGDRGGMRSGGYQDIVCRNCHQYGHMSRDCMGPLMICHNCGGRGHRAIECPSGRMMDRYPQRFY 254 HSP 2 Score: 86.2705 bits (212), Expect = 3.272e-15 Identity = 51/153 (33.33%), Postives = 74/153 (48.37%), Query Frame = 1 Query: 1513 STTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPS 1971 + +C NCK PGH A +CP + +C+NC GH ++CT + C NC + GH+A +C NE +C+ C +GH A++C + G R C NC + GHI+ DC + C+NC GHL ECP+ Sbjct: 47 QSNLCKNCKRPGHYARECP--------------------------NVAICHNCGLPGHIASECTTKSLCWNCREPGHMASNCPNEGICHTCGKAGHRAKECTAPPMPP---GDLR--LCNNCYKQGHIAADCTNDKACNNCRKTGHLARECPN 168
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: K4ADZ3_SETIT (Uncharacterized protein OS=Setaria italica GN=Si037100m.g PE=4 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 2.923e-61 Identity = 104/176 (59.09%), Postives = 131/176 (74.43%), Query Frame = 1 Query: 1483 LCSHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDI-GGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007 L H A EC S T+CWNCKE GH+A +C E +C+ K GHLARDC + +LCNNC+K GH DCTNE+ACNNC + GH+AR+C N+PVCN+CN+SGHVAR C K L+S+I GG FRDI CR CGQPGHIS++C + +IC CGGRGH+ YECPSAR+++R G+RR+ Sbjct: 89 LPGHFAAECTSATVCWNCKESGHIATECKNEALCHTCNKTGHLARDCP---TSGSNVKLCNNCFKPGHIAVDCTNERACNNCRQPGHIARECKNDPVCNLCNVSGHVARSCPKTTLASEIQGGPFRDILCRICGQPGHISRNCMATIICDTCGGRGHMSYECPSARIFNR-GLRRF 260 HSP 2 Score: 89.3521 bits (220), Expect = 3.260e-16 Identity = 53/148 (35.81%), Postives = 72/148 (48.65%), Query Frame = 1 Query: 1522 ICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYEC 1965 +C NC+ PGH A CP A CNNC GHF A+CT+ C NC ++GH+A +C NE +C+ CN +GH+AR C + + C NC +PGHI+ DC + C+NC GH+ EC Sbjct: 64 MCKNCRRPGHYAKDCP--------------------------SAATCNNCNLPGHFAAECTSATVCWNCKESGHIATECKNEALCHTCNKTGHLARDCPTSGSNVKL--------CNNCFKPGHIAVDCTNERACNNCRQPGHIAREC 177
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Match: A0A067E490_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024887mg PE=4 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 3.797e-61 Identity = 113/195 (57.95%), Postives = 131/195 (67.18%), Query Frame = 1 Query: 1483 LCSHIAVECNSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGR-------------------FRDIFCRNCGQPGHISQDCFS-IVICSNCGGRGHLHYECPSARMYDRSGVRRY 2007 L HIA EC + +CWNC+EPGH+AG CP E +C+ GK GH ARDC P LP D RLCNNCYK GHF ADCTN+KACNNC KTGHLARDC N+P+CN+CN+SGHVAR C K S +G R +RDI CRNC Q GH+S+DC +++C NCGGRGHL YECPS R DR RRY Sbjct: 71 LPGHIASECTTKALCWNCREPGHMAGNCPNEGICHTCGKAGHRARDCTAPPLPPGDLRLCNNCYKQGHFAADCTNDKACNNCRKTGHLARDCPNDPICNLCNVSGHVARHCPK---SGGLGDRYSGGSGARGSGGSGARGGGYRDIVCRNCQQLGHMSRDCMGPLMVCHNCGGRGHLAYECPSGRFLDRY-SRRY 261 HSP 2 Score: 83.9593 bits (206), Expect = 1.889e-14 Identity = 51/154 (33.12%), Postives = 73/154 (47.40%), Query Frame = 1 Query: 1510 NSTTICWNCKEPGHLAGQCPYEPVCNM*GKMGHLARDCLNPRLPAHDARLCNNCYKAGHFVADCTNEKACNNCHKTGHLARDCHNEPVCNICNISGHVARQCAKWKLSSDIGGRFRDIFCRNCGQPGHISQDCFSIVICSNCGGRGHLHYECPS 1971 + + +C NCK PGH A +CP + +C+NC GH ++CT + C NC + GH+A +C NE +C+ C +GH AR C L G R C NC + GH + DC + C+NC GHL +CP+ Sbjct: 42 SQSNLCKNCKRPGHFARECP--------------------------NVAICHNCGLPGHIASECTTKALCWNCREPGHMAGNCPNEGICHTCGKAGHRARDCTAPPLPP---GDLR--LCNNCYKQGHFAADCTNDKACNNCRKTGHLARDCPN 164 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 11
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BLAST of g.barbadense_cottongen_reftransV1_0091568 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0091568 ID=g.barbadense_cottongen_reftransV1_0091568; Name=g.barbadense_cottongen_reftransV1_0091568; organism=Gossypium barbadense; type=contig; length=2239bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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