g.barbadense_cottongen_reftransV1_0092928, g.barbadense_cottongen_reftransV1_0092928 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A0B0PJ03_GOSAR (Putative transporter C5D6.04 OS=Gossypium arboreum GN=F383_05650 PE=4 SV=1) HSP 1 Score: 833.173 bits (2151), Expect = 0.000e+0 Identity = 414/417 (99.28%), Postives = 415/417 (99.52%), Query Frame = -2 Query: 183 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLLF 1433 MGFLDLLLVALIPVIKVLFITGVGLFLALD VNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDW+AASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSIIIGIIAVRNVFMPLLGIGVV AAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLLF Sbjct: 1 MGFLDLLLVALIPVIKVLFITGVGLFLALDRVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWIAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSIIIGIIAVRNVFMPLLGIGVVKAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLLF 417
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A0D2SB33_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G306100 PE=4 SV=1) HSP 1 Score: 822.772 bits (2124), Expect = 0.000e+0 Identity = 410/417 (98.32%), Postives = 411/417 (98.56%), Query Frame = -2 Query: 183 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLLF 1433 MGFLDLLLVALIPVIKVLFITGVGLFLALD VNLLGPDARNHLNKIVFYVFGPALVATNLAQT TYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNS SESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEK SALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQ LIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSIIIGIIAVRNVFMPLLGIGVV AAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESS+IMLWTYVVAAFSLTLWSTVFMWLLF Sbjct: 1 MGFLDLLLVALIPVIKVLFITGVGLFLALDRVNLLGPDARNHLNKIVFYVFGPALVATNLAQTTTYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSNSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKSSALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQTLIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSIIIGIIAVRNVFMPLLGIGVVKAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSIIMLWTYVVAAFSLTLWSTVFMWLLF 417
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A0D2TUD1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G306100 PE=4 SV=1) HSP 1 Score: 681.404 bits (1757), Expect = 0.000e+0 Identity = 338/343 (98.54%), Postives = 339/343 (98.83%), Query Frame = -2 Query: 183 MPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLLF 1211 MPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNS SESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEK SALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQ LIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSIIIGIIAVRNVFMPLLGIGVV AAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESS+IMLWTYVVAAFSLTLWSTVFMWLLF Sbjct: 1 MPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSNSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKSSALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQTLIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSIIIGIIAVRNVFMPLLGIGVVKAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSIIMLWTYVVAAFSLTLWSTVFMWLLF 343
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A061FVW9_THECC (Auxin efflux carrier family protein OS=Theobroma cacao GN=TCM_043509 PE=4 SV=1) HSP 1 Score: 526.168 bits (1354), Expect = 1.839e-178 Identity = 266/417 (63.79%), Postives = 335/417 (80.34%), Query Frame = -2 Query: 186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQ-PHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433 MGFLDL +VA++PV+KVL +TGVGLFLA D +NLLGP+ARN+LNKIVFY+FGP+LV +NLA+T+T ESLVT+WFMPVNI LTF+IGSAL W+LIKIT+TP+HL+GMVIGCCSAGNLGNL LIIVP+VC ESN PFG+S C + A+AYASLSMA GAIFIWSY Y + +YA+ E NSS+ S D +C E LLPS+D + S++YS Q P N + + K+S ++K + I + M KI+LK VFAPSAIA +VGF IGT+SPIR++LIG +APL VI+ S++L+ + + CMTL++GANLLKGL RS++ +IIGI+AVRN+F+PL GIGVV AA H G+VG+D+L++FVLMLQYA+PPAM+VGTMTQLFQ GQ ESS+IMLWTY VA+ SLTLWS +FMWLL Sbjct: 1 MGFLDLFVVAVMPVLKVLLVTGVGLFLATDGINLLGPEARNYLNKIVFYLFGPSLVVSNLAETVTLESLVTMWFMPVNIFLTFIIGSALGWILIKITKTPEHLRGMVIGCCSAGNLGNLLLIIVPAVCTESNTPFGDS--CSTYAEAYASLSMAVGAIFIWSYAYPFVYAYASKSMEQ------NSSEGAPQSFPD--SCTEALLPSRD-CSNSEDYSGQGVLPLTNSDKRIKMSVVKKTVESIKIIMGKIDLKRVFAPSAIAAVVGFIIGTISPIRKVLIGDNAPLHVIDTSVSLIAEAAIPCMTLIMGANLLKGLKRSEVSMLVIIGIVAVRNIFLPLSGIGVVKAAHHFGMVGSDSLYRFVLMLQYAVPPAMSVGTMTQLFQSGQGESSMIMLWTYAVASISLTLWSMLFMWLL 406
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A061FVX8_THECC (Auxin efflux carrier family protein OS=Theobroma cacao GN=TCM_043536 PE=4 SV=1) HSP 1 Score: 522.316 bits (1344), Expect = 2.361e-176 Identity = 258/423 (60.99%), Postives = 332/423 (78.49%), Query Frame = -2 Query: 186 IRCEYRLMGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1454 +R + MGFL+L +VA++PV+K++ IT +GL LALD V LLGP+A++HLNKIVFYVF PAL A++LA+T+T++S TLWFMPVNIL+TF++GSALAWLLIK TRTPKHLQG+VIGCCSAGNL NLPLI+VP+VCEE +NPFG+ S C +NA+ YASLS++ GAIF+WSYVYGIMR YAN E+ T INS + S + S T + LPS D + ++ +Q K S L+K CI M +KI+LK+VFAP+A+A +VGF IG VSPIR+++IG+ APLRVI++S +LG+ ++ CMTL++GANLL GL SD+ ++IIGIIAVRN+F+PL GIGVV AA H GLVG+D+L+QFVLMLQYA+PPAM++GTMTQ FQ+GQ E+S+IMLW YV AA +LTLWST FMWLL Sbjct: 32 VRETFLQMGFLNLFIVAVMPVLKIILITAIGLLLALDRVKLLGPEAKHHLNKIVFYVFSPALAASSLAETMTFKSFTTLWFMPVNILITFVLGSALAWLLIKFTRTPKHLQGIVIGCCSAGNLANLPLIMVPAVCEEPSNPFGDQSVCSTNAKPYASLSLSIGAIFMWSYVYGIMRMYANKSIESS-TTGINSPRDTSETVSGSRT--QAALPSSDCNNSDLPRTISRQ------RSTKTSGLKKIIPCIKMISRKIDLKKVFAPTAVAAIVGFIIGAVSPIRKLMIGSSAPLRVIDSSAYILGEASIPCMTLIMGANLLTGLKGSDVSRNVIIGIIAVRNIFLPLSGIGVVKAAHHFGLVGSDSLYQFVLMLQYAVPPAMSIGTMTQFFQLGQGETSMIMLWAYVTAAVTLTLWSTFFMWLL 445
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A061FPZ3_THECC (Auxin efflux carrier family protein OS=Theobroma cacao GN=TCM_043548 PE=4 SV=1) HSP 1 Score: 507.294 bits (1305), Expect = 4.052e-171 Identity = 249/416 (59.86%), Postives = 324/416 (77.88%), Query Frame = -2 Query: 186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433 MGFL+L +VA++PV+K++ IT +GL LALD + LLGP+A++HLN IVFYVF PAL A++LA+T+T++S TLWFMPVNIL+TF++GSALAWL+IKITRTPKHLQG+VIGCCSAGN+GNLPL++VP++CEE NPFG+ S C NA+ YASLS++ G IF+WSYVYGIMR YAN E+ T +NS + S + S +C + LPS D + ++ E+ ++S L K I M KI+LK++FAP+AIA +VGF IG SPIR+++IG APLRVI+ ++LG+ T+ C+TL++GANLL GL SD+ ++IIGIIAVRN+F+PL GIGVV AA H GLVG+D+L+QFVLMLQYA+PPAM++GTMTQ FQ+GQ E+SVIMLWTY VAA +LTLWST FMWLL Sbjct: 1 MGFLNLFIVAVMPVLKIILITAIGLLLALDRMKLLGPEAKHHLNNIVFYVFSPALAASSLAETMTFKSFTTLWFMPVNILITFVLGSALAWLIIKITRTPKHLQGIVIGCCSAGNMGNLPLVMVPALCEEPRNPFGDPSVCSRNAKPYASLSLSIGVIFMWSYVYGIMRMYANKSIESS-TTGVNSPRDTSETVSG--SCTQAALPSSDCNTSHLPRTISS------ESSTRMSGLMKIMMRIKMISGKIDLKKMFAPAAIAAIVGFIIGAASPIRKLMIGNSAPLRVIDGCAHILGEATIPCVTLIMGANLLIGLKGSDVSRNVIIGIIAVRNIFLPLSGIGVVKAAHHFGLVGSDSLYQFVLMLQYAVPPAMSIGTMTQFFQLGQGETSVIMLWTYAVAAVTLTLWSTFFMWLL 407
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: A0A061FPG6_THECC (Auxin efflux carrier family protein OS=Theobroma cacao GN=TCM_043525 PE=4 SV=1) HSP 1 Score: 504.597 bits (1298), Expect = 4.743e-170 Identity = 259/416 (62.26%), Postives = 331/416 (79.57%), Query Frame = -2 Query: 186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433 MGFL+LL+VA++PV+K++ IT +GL LALD + LLGP+A +H+N IVFYVF PAL A++LA+T+T++SL TLWFMPVN+LLTF++GSALAWLLIKITRTPKHLQG+VIGCCSAGNLGNLPLI+VP+VCEE +NPFG+ S C +NA+ YASLS++ GAIFIWSYVYGIMR YAN E+ T INS SE+ C + +LPS + + ++ E K+S L+K + M KI+LK+VFAP+A+A +VGF IG VSPIR+++IG APLRVI++S +LG+ T+ CMTL++GANLL GL SD+ ++IIGIIAVRN+F+PL GIGVV AA H GLVG+D+L+QFVLMLQYA+PPAMA+GTMTQ FQ+GQ E+S+IMLWTYV+AA +LTLWST+FMWLL Sbjct: 1 MGFLNLLIVAVMPVLKIILITAIGLLLALDRLKLLGPEANHHMNNIVFYVFSPALAASSLAETVTFKSLTTLWFMPVNLLLTFVLGSALAWLLIKITRTPKHLQGIVIGCCSAGNLGNLPLIMVPAVCEEPSNPFGDPSVCSTNAKPYASLSLSIGAIFIWSYVYGIMRMYANKSNESS-TTGINSPIDT--SETVPGGCTQAVLPSSNCNTSYLPRTISG------ERSTKMSGLKKIMPRVKMISGKIDLKKVFAPTAVAAIVGFIIGAVSPIRKLMIGKSAPLRVIDSSAYILGEATIPCMTLIMGANLLIGLKGSDVSRTVIIGIIAVRNIFLPLSGIGVVKAAHHFGLVGSDSLYQFVLMLQYAVPPAMAIGTMTQFFQLGQGETSMIMLWTYVIAAVTLTLWSTLFMWLL 407
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: U5GX65_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s46060g PE=4 SV=1) HSP 1 Score: 499.59 bits (1285), Expect = 3.884e-168 Identity = 251/416 (60.34%), Postives = 318/416 (76.44%), Query Frame = -2 Query: 186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433 MGFLDL +VA++PV+KVL IT VGLFLALD ++LLG AR +LN ++FYVF PALV++ LA TIT +SL +LWFMPVNILLTF+IGS LAW+LIKITRTP HLQG+VIGCCSAGNLGNL LIIVP+VC ESN+PFG+S+ C S AYASLSMA GAI+IW+YVY IMR YA+N E T N++ + SY+E+ LLPS + + D +SV + +K++ + + F NLK+VFAP+ IA M GF IGT+SPIR+++IG APLRV+E+S +LLG ++ CM L++G+NLLKGL RS+I S+I GI+ VRN F+PL+GIG+V AA H GLVG+D+L+QF+L+LQYALPPAMA+G M QLF+ G+SE SVIMLW YV+AAFSLTLWST +MWLL Sbjct: 1 MGFLDLFVVAMVPVLKVLLITLVGLFLALDRIDLLGSTARPYLNNLIFYVFSPALVSSQLAGTITLQSLASLWFMPVNILLTFIIGSVLAWILIKITRTPPHLQGLVIGCCSAGNLGNLLLIIVPAVCNESNSPFGDSTVCSSYGMAYASLSMAVGAIYIWTYVYIIMRIYADNSAEN--TKNVSIADSESYTEA--------LLPSSEKSSCHD-HSVHAELPETMSEGKKVTFMERTFWNFKKFAANTNLKKVFAPATIAAMFGFVIGTISPIRKVIIGDSAPLRVLESSASLLGQASIPCMALIMGSNLLKGLRRSEISVSVIAGIVVVRNFFLPLIGIGIVKAAHHFGLVGSDSLYQFILLLQYALPPAMAIGVMAQLFKAGESECSVIMLWCYVLAAFSLTLWSTFYMWLL 405
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: D7U495_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01860 PE=4 SV=1) HSP 1 Score: 498.434 bits (1282), Expect = 1.650e-167 Identity = 252/421 (59.86%), Postives = 324/421 (76.96%), Query Frame = -2 Query: 186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDL-----ETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433 MGFL L +VAL+P++KVL +TGVGL +AL+ ++LLG +AR +LN IVFYVF PALV++NLA+TIT+ SLVT+WFMPVNILLTF+IGSAL W+LIKITRTP+HLQG+V+GCCSAGNLGNL LII+P++CEE +NPFG+S C +N +AYASLS+A GAI IWSYVY IMR AN K+ IN++ S + + + E C E LLPSKD ++ + + H E ++K+ L K Q + + M+KI+LK+VFAPS I +VGFFIG +SPIR+++IG APL VIE+S +G+ V TL++GANLLKGL SD+ +I+GI+AVR + +PLLG+ VV AA H GLVG+++LFQFVLMLQYALPPAM+ GTM+QLF+ GQSE SVIMLWTY VAAFSLTLWS+ FMWL+ Sbjct: 1 MGFLSLFVVALVPILKVLLVTGVGLLIALERIDLLGANARRNLNAIVFYVFNPALVSSNLAKTITFSSLVTMWFMPVNILLTFVIGSALGWVLIKITRTPQHLQGLVLGCCSAGNLGNLLLIIIPAICEEEDNPFGDSD-CSTNGEAYASLSLAIGAIGIWSYVYTIMRISANKCKK---EINLDDSTISIRTSGETLEILSEGCTEALLPSKDCPSSRECSDEVELAHAGSEGKQKVPFLEKIKQQVEILMEKIDLKKVFAPSTIGVIVGFFIGLISPIRKLIIGDSAPLHVIESSAYFVGEAAVPSTTLIMGANLLKGLKGSDVSIVVILGIMAVRYIALPLLGVVVVKAAHHFGLVGSNSLFQFVLMLQYALPPAMSTGTMSQLFEFGQSECSVIMLWTYAVAAFSLTLWSSFFMWLV 417
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Match: U5GUR2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s46060g PE=4 SV=1) HSP 1 Score: 497.278 bits (1279), Expect = 3.383e-167 Identity = 250/416 (60.10%), Postives = 317/416 (76.20%), Query Frame = -2 Query: 186 MGFLDLLLVALIPVIKVLFITGVGLFLALDHVNLLGPDARNHLNKIVFYVFGPALVATNLAQTITYESLVTLWFMPVNILLTFMIGSALAWLLIKITRTPKHLQGMVIGCCSAGNLGNLPLIIVPSVCEESNNPFGESSTCFSNAQAYASLSMATGAIFIWSYVYGIMRSYANNYKEAGLTININSSQKNSYSESDLETCREPLLPSKDWVAASDEYSVQQQPHGNFETQEKISALRKRFQCITMTMKKINLKEVFAPSAIAGMVGFFIGTVSPIRQILIGADAPLRVIENSINLLGDPTVACMTLLVGANLLKGLTRSDIRPSXXXXXIAVRNVFMPLLGIGVVNAAQHLGLVGTDALFQFVLMLQYALPPAMAVGTMTQLFQMGQSESSVIMLWTYVVAAFSLTLWSTVFMWLL 1433 MGFLDL +VA++PV+KVL IT VGLFLALD ++LLG AR +LN ++FYVF PALV++ LA TIT +SL +LWFMPVNILLTF+IGS LAW+LIKITRTP HLQG+VIGCCSAGNLGNL LIIVP+VC ESN+PFG+S+ C S AYASLSMA GAI+IW+YVY IMR YA+N E T N++ + SY+E+ LLPS + + D + P ++ K++ + + F NLK+VFAP+ IA M GF IGT+SPIR+++IG APLRV+E+S +LLG ++ CM L++G+NLLKGL RS+I S+I GI+ VRN F+PL+GIG+V AA H GLVG+D+L+QF+L+LQYALPPAMA+G M QLF+ G+SE SVIMLW YV+AAFSLTLWST +MWLL Sbjct: 1 MGFLDLFVVAMVPVLKVLLITLVGLFLALDRIDLLGSTARPYLNNLIFYVFSPALVSSQLAGTITLQSLASLWFMPVNILLTFIIGSVLAWILIKITRTPPHLQGLVIGCCSAGNLGNLLLIIVPAVCNESNSPFGDSTVCSSYGMAYASLSMAVGAIYIWTYVYIIMRIYADNSAEN--TKNVSIADSESYTEA--------LLPSSEKSSCHDHSVHAELPET--MSEGKVTFMERTFWNFKKFAANTNLKKVFAPATIAAMFGFVIGTISPIRKVIIGDSAPLRVLESSASLLGQASIPCMALIMGSNLLKGLRRSEISVSVIAGIVVVRNFFLPLIGIGIVKAAHHFGLVGSDSLYQFILLLQYALPPAMAIGVMAQLFKAGESECSVIMLWCYVLAAFSLTLWSTFYMWLL 404 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0092928 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092928 ID=g.barbadense_cottongen_reftransV1_0092928; Name=g.barbadense_cottongen_reftransV1_0092928; organism=Gossypium barbadense; type=contig; length=1998bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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