g.barbadense_cottongen_reftransV1_0092533, g.barbadense_cottongen_reftransV1_0092533 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy Swiss-Prot
Match: C3H41_ARATH (Zinc finger CCCH domain-containing protein 41 OS=Arabidopsis thaliana GN=At3g27700 PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.119e-27 Identity = 103/256 (40.23%), Postives = 147/256 (57.42%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTAS-------VIPAQRKDYFQPI-----------PLNSPKPH----SMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGDT--EQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPKSK--RQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHI 960 +FS++EEAE+AL+APDAVMGNRFIKLW ANRD IPD +++GSG S+ R +TAS + A + ++ I P +S +P + +G V P +KK +TLE++KE LRKKQE+LEQKR ++R++L LEKQ + VK + E AKR K+D A D A + P ++ STE + SP SK +Q S ++ ++N+YKLDNR T +V+ PLP+ A + Sbjct: 480 QFSKREEAESALRAPDAVMGNRFIKLWWANRDSIPDNGLSTGSGASMKGRSMTASGAQNQFPIAAASKSNHVSSIAKVPTFQTGGAPSSSEQPKPVVVTTSGPKVTPLQQKKADTLERLKETLRKKQEMLEQKRNEYRKKLATLEKQGTVVKREEADEPDAKRVKLDTASDSGAAIASPKTESSTDKKVPILKPLSTAKLSTE---TPSPDSKNFKQRPYSFTTSLNAPMVNRYKLDNRTTTIKVVPPLPTGLADV 732 HSP 2 Score: 63.929 bits (154), Expect = 4.560e-9 Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 1 Query: 1396 VDVLKEHFSQYSDLFSVELEDVENEDVMVS-ETLNDC-SAHITYSTCRSAEKAYANSKCWQGHNLQFSWL 1599 V V+KEHFS Y ++ VELED + D ET N+ +A +T+ +AEKA+AN+KCWQ H LQ W+ Sbjct: 732 VAVVKEHFSSYGEVSKVELEDNASIDSGKDHETQNESRAACVTFVKRSAAEKAFANAKCWQEHTLQLVWV 801
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy Swiss-Prot
Match: C3H27_ORYSJ (Zinc finger CCCH domain-containing protein 27 OS=Oryza sativa subsp. japonica GN=Os04g0394300 PE=2 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 1.248e-15 Identity = 96/267 (35.96%), Postives = 128/267 (47.94%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPAQRKDYFQPIPLNSPKPHSMN--------------------------GLMVPPA-------PRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGDTEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPKSKRQSCQSAPVGIH---PFVL---NKYKLDNRPTAFRVISPLPSDFA 954 +FS++EEAEAALKAPDAVMGNRFIKLW ANRDRIPD V R IPA+ + + P+P S N G + PA P K + ++ EELRKKQE+L QKR +FRRQL KL KQ G+ +QA K + D + + +S P T ++++ + S S KS S Q V P ++ N++KLDNR T+FR++ PLP + A Sbjct: 501 QFSKREEAEAALKAPDAVMGNRFIKLWWANRDRIPD---------EVEGR------IPAKSSHMSAALANSVPQPSSSNRGKENLQSATPRASSGSSAEASGPGTGHKMLPANSVKSLPPDTKRQESLELLEELRKKQEILAQKRDEFRRQLEKLAKQ-KGLANSAKQAEAGGKEVASNDVHRVTDSKSMNTGTEG--PRDAAGTLQNRTSGELASSSHKSSATSAQKPAVATKQTSPLLVPSQNRFKLDNRTTSFRILPPLPPEIA 749 HSP 2 Score: 67.0106 bits (162), Expect = 4.212e-10 Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 1 Query: 1402 VLKEHFSQYSDLFSVELEDVE--NEDVMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISS 1608 VLK+HF + +L SV LED E N D + +L+ CSA +TY+T +SAEKA+ K +GH L+F WL +S Sbjct: 753 VLKDHFMSFGELSSVVLEDTEAYNHDATLKPSLS-CSACVTYTTRQSAEKAFIGGKSCKGHTLRFMWLTAS 822
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: A0A0B0PH16_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_03537 PE=4 SV=1) HSP 1 Score: 429.098 bits (1102), Expect = 2.210e-138 Identity = 235/290 (81.03%), Postives = 246/290 (84.83%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPAQRKDYFQPIPLNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGDTEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPKSKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHIGCSLLFLV*GYCFLAPSFVRMKFTMIHHLLYIEKEKMK*AHFANNICLLCSDVRDACVRH 1140 +FSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDG INSGSGVSVTSRGLTASVIPAQRKDYFQPIPLNSPKPHSMNGLMVPPAPRKKLETLEQMKEELRKKQELLEQKRKDFRRQLHKLEKQSSGVKGDTEQAAKRQKVDIAVDPAKASTPRSSGPCAS ATPCTMGVTDMDKSTENILSHSPKSKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAH+ ++ F+ L +E E + AN ++ S+ + C H Sbjct: 134 QFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGGINSGSGVSVTSRGLTASVIPAQRKDYFQPIPLNSPKPHSMNGLMVPPAPRKKLETLEQMKEELRKKQELLEQKRKDFRRQLHKLEKQSSGVKGDTEQAAKRQKVDIAVDPAKASTPRSSGPCASGATPCTMGVTDMDKSTENILSHSPKSKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHV----------------DVLKEHFSQYSDLFSVELEDV-----ANEDVVMVSETLNDCSAH 402 HSP 2 Score: 292.738 bits (748), Expect = 2.540e-86 Identity = 143/147 (97.28%), Postives = 144/147 (97.96%), Query Frame = 1 Query: 1396 VDVLKEHFSQYSDLFSVELEDVENEDV-MVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISSNSINDPISKETSSAPKEPLEADDIQTEEKLACSISQEVASDDGESENSDVKSFVEHKYLAEVSEHSPSPTSRVKE 1833 VDVLKEHFSQYSDLFSVELEDV NEDV MVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNL+FSWL SSNSINDPISKETSSAPKEPLEADDIQTEEKLACSISQEVASDDGESENSDVKSFVEHKYLAEVSEHSPSPTSRVKE Sbjct: 363 VDVLKEHFSQYSDLFSVELEDVANEDVVMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLKFSWLTSSNSINDPISKETSSAPKEPLEADDIQTEEKLACSISQEVASDDGESENSDVKSFVEHKYLAEVSEHSPSPTSRVKE 509
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: A0A0D2P4S3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G075900 PE=4 SV=1) HSP 1 Score: 389.423 bits (999), Expect = 2.035e-123 Identity = 219/256 (85.55%), Postives = 225/256 (87.89%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPAQ-----RKDYFQPIP-------------LNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGDTEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPKSKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHIGCSLLFLV 984 +FSR+EEAEA+LKAPDAVMGNRFIKLWC RDRIPD INSGSGVSVTSRGLTASVIPAQ KD FQPIP LNSPK HSMNGLM+PPAPRKKLETLEQMKEELRKKQELLEQKRKDF+RQL KLEKQSSGVKGDTEQAAKRQKVDIA DPA ASTPRSSGPCASAATPCTMGVTD DKSTENILSHSPKSKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLP DFAH+ CSLLFLV Sbjct: 227 QFSRREEAEASLKAPDAVMGNRFIKLWCTKRDRIPDVGINSGSGVSVTSRGLTASVIPAQPAANRGKDNFQPIPQKSNVIHGVDLPSLNSPKLHSMNGLMIPPAPRKKLETLEQMKEELRKKQELLEQKRKDFQRQLDKLEKQSSGVKGDTEQAAKRQKVDIAADPANASTPRSSGPCASAATPCTMGVTDTDKSTENILSHSPKSKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPPDFAHLSCSLLFLV 482
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: A0A0D2S8U2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G075900 PE=4 SV=1) HSP 1 Score: 388.267 bits (996), Expect = 2.768e-122 Identity = 219/256 (85.55%), Postives = 225/256 (87.89%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPAQ-----RKDYFQPIP-------------LNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGDTEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPKSKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHIGCSLLFLV 984 +FSR+EEAEA+LKAPDAVMGNRFIKLWC RDRIPD INSGSGVSVTSRGLTASVIPAQ KD FQPIP LNSPK HSMNGLM+PPAPRKKLETLEQMKEELRKKQELLEQKRKDF+RQL KLEKQSSGVKGDTEQAAKRQKVDIA DPA ASTPRSSGPCASAATPCTMGVTD DKSTENILSHSPKSKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLP DFAH+ CSLLFLV Sbjct: 280 QFSRREEAEASLKAPDAVMGNRFIKLWCTKRDRIPDVGINSGSGVSVTSRGLTASVIPAQPAANRGKDNFQPIPQKSNVIHGVDLPSLNSPKLHSMNGLMIPPAPRKKLETLEQMKEELRKKQELLEQKRKDFQRQLDKLEKQSSGVKGDTEQAAKRQKVDIAADPANASTPRSSGPCASAATPCTMGVTDTDKSTENILSHSPKSKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPPDFAHLSCSLLFLV 535
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: A0A0D2SFT1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G075900 PE=4 SV=1) HSP 1 Score: 387.111 bits (993), Expect = 1.456e-121 Identity = 219/256 (85.55%), Postives = 225/256 (87.89%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPAQ-----RKDYFQPIP-------------LNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGDTEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPKSKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHIGCSLLFLV 984 +FSR+EEAEA+LKAPDAVMGNRFIKLWC RDRIPD INSGSGVSVTSRGLTASVIPAQ KD FQPIP LNSPK HSMNGLM+PPAPRKKLETLEQMKEELRKKQELLEQKRKDF+RQL KLEKQSSGVKGDTEQAAKRQKVDIA DPA ASTPRSSGPCASAATPCTMGVTD DKSTENILSHSPKSKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLP DFAH+ CSLLFLV Sbjct: 302 QFSRREEAEASLKAPDAVMGNRFIKLWCTKRDRIPDVGINSGSGVSVTSRGLTASVIPAQPAANRGKDNFQPIPQKSNVIHGVDLPSLNSPKLHSMNGLMIPPAPRKKLETLEQMKEELRKKQELLEQKRKDFQRQLDKLEKQSSGVKGDTEQAAKRQKVDIAADPANASTPRSSGPCASAATPCTMGVTDTDKSTENILSHSPKSKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPPDFAHLSCSLLFLV 557
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: A0A0D2QNC1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G075900 PE=4 SV=1) HSP 1 Score: 387.497 bits (994), Expect = 2.638e-121 Identity = 219/256 (85.55%), Postives = 225/256 (87.89%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPAQ-----RKDYFQPIP-------------LNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGDTEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPKSKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHIGCSLLFLV 984 +FSR+EEAEA+LKAPDAVMGNRFIKLWC RDRIPD INSGSGVSVTSRGLTASVIPAQ KD FQPIP LNSPK HSMNGLM+PPAPRKKLETLEQMKEELRKKQELLEQKRKDF+RQL KLEKQSSGVKGDTEQAAKRQKVDIA DPA ASTPRSSGPCASAATPCTMGVTD DKSTENILSHSPKSKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLP DFAH+ CSLLFLV Sbjct: 339 QFSRREEAEASLKAPDAVMGNRFIKLWCTKRDRIPDVGINSGSGVSVTSRGLTASVIPAQPAANRGKDNFQPIPQKSNVIHGVDLPSLNSPKLHSMNGLMIPPAPRKKLETLEQMKEELRKKQELLEQKRKDFQRQLDKLEKQSSGVKGDTEQAAKRQKVDIAADPANASTPRSSGPCASAATPCTMGVTDTDKSTENILSHSPKSKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPPDFAHLSCSLLFLV 594
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: A0A061ECV5_THECC (Zinc finger family protein / RNA recognition motif-containing protein, putative OS=Theobroma cacao GN=TCM_016945 PE=4 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 2.550e-79 Identity = 179/263 (68.06%), Postives = 199/263 (75.67%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPAQR------KDYFQPIP-------------LNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGD--TEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSPK------------SKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHI 960 +FSR+EEAEAALKAPDAVMGNRFIKLW ANRD IPD ++SGSG+S+T RGLTASVIP+Q KD QPIP LNSPKP S NG VPP +KK ETLEQMKEELRKKQE+LEQKR DFRRQL KLEKQSSGVKGD TEQAAKRQKV IA DPAKASTP SS P ASAATPCT+G+T+ +KSTEN++SHSPK SK+QS SAP G HPF++N+YKLDNRP AFRVI PLPS FA + Sbjct: 527 QFSRREEAEAALKAPDAVMGNRFIKLWWANRDSIPDDGVSSGSGISITPRGLTASVIPSQTSVANRGKDNLQPIPQKSNVVHGADVPSLNSPKPVSANGPKVPPPLQKKFETLEQMKEELRKKQEMLEQKRNDFRRQLDKLEKQSSGVKGDLMTEQAAKRQKVGIAADPAKASTPMSSEPGASAATPCTIGMTEKNKSTENVVSHSPKSNTTMALQESMSSKQQSRPSAPAG-HPFLMNRYKLDNRPPAFRVIPPLPSGFADV 788 HSP 2 Score: 169.088 bits (427), Expect = 2.629e-40 Identity = 94/157 (59.87%), Postives = 115/157 (73.25%), Query Frame = 1 Query: 1396 VDVLKEHFSQYSDLFSVELEDVENE-DVMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISSNSINDPISKETSSA-PKEPLEADDIQTEEKLACSISQE-VASDDGESENSDVKSFVEHKYLAEVSEHSPSPTSRVKE*SPKGKAC 1857 VD LKEHF QY DLF+VELE+VEN+ D + SE L +CSA ITYST R+AE+A+ N KCWQG+NLQF+WL S++ NDP SKETSS+ PK L+A D+Q EEKL CS+SQE V S +GESENS+ KSFVEH L E +S ++ S KG AC Sbjct: 788 VDALKEHFLQYGDLFAVELEEVENDGDGLGSEALKNCSALITYSTRRAAERAFVNGKCWQGNNLQFTWLTSTS--NDPSSKETSSSIPKGSLDA-DVQREEKLTCSVSQEVVGSGNGESENSEGKSFVEHMELFEEVSRHSPSSSASEKESHKGDAC 941
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: A0A0B0PES1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_03576 PE=4 SV=1) HSP 1 Score: 266.929 bits (681), Expect = 3.261e-73 Identity = 179/298 (60.07%), Postives = 200/298 (67.11%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPAQ------RKDYFQPIP-------------LNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGD--TEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSP------------KSKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHIGCSLLFLV*GYCFLAPSFVRMKFTMIHHLLYIEKE 1065 +FSR+EEAEAALKAPDAVMGNRFIKLW ANRD +PD INSGS V+VTSRG T VIPAQ KD QPI +NSPKP +NG V +KKLETLEQMKEELRKKQE LEQKR DFRRQL KL+KQSSGVKGD TEQAAK+QKV IA DPAKASTP S P A PCT+G+TD +KSTEN+ SH P SK+QS SAP G +PF++NKYKLDNRPTAFRVI PLPS FA + SL APSF F +I L + EK+ Sbjct: 526 QFSRREEAEAALKAPDAVMGNRFIKLWWANRDSVPDDGINSGSSVTVTSRGPTVFVIPAQPVVNRGGKDNLQPIAQKSNAVHGAAVPSVNSPKPSGVNGPKVQLPLQKKLETLEQMKEELRKKQETLEQKRNDFRRQLDKLQKQSSGVKGDLPTEQAAKKQKVGIAADPAKASTPSLSEPGAPTTIPCTVGMTDKNKSTENVGSHGPTSNATMSLQESKSSKQQSRPSAPTG-YPFLMNKYKLDNRPTAFRVIPPLPSGFADVSHSLFSSE--KIVFAPSFYEDGFYLIILLFHFEKK 820 HSP 2 Score: 154.066 bits (388), Expect = 2.120e-35 Identity = 102/156 (65.38%), Postives = 121/156 (77.56%), Query Frame = 1 Query: 1396 VDVLKEHFSQYSDLFSVELEDVENEDVMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISSNSINDPISKETSSA-PKEPLEADDIQTEEKLACSISQEV-ASDDGESENSDVKSFVEHKYLAEVSEHSPSPTSRVKE*SPKGKAC 1857 VDVLKEHF QY DL +VE+EDVEN++ M SE +N+CS ITY T RSAE+AY N KCWQG+NLQF+WL SSNS NDP SKE SS+ PK LEA +QTE +L CS+S EV AS D ES+NS+ +SFVE+ L EVSEHS SP+S +KE SPKG AC Sbjct: 821 VDVLKEHFLQYGDLSAVEIEDVENDNDMGSEAMNNCSIVITYGTRRSAERAYVNGKCWQGNNLQFTWLKSSNSSNDPSSKENSSSTPKGTLEA-GVQTEGELECSVSPEVIASGDKESKNSEGESFVENMALPEVSEHSSSPSSCMKE-SPKGDAC 974
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: A0A0D2TJI9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G063700 PE=4 SV=1) HSP 1 Score: 260.381 bits (664), Expect = 5.698e-71 Identity = 169/263 (64.26%), Postives = 188/263 (71.48%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPAQR------KDYFQPIP-------------LNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGD--TEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENILSHSP------------KSKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHI 960 +FSR+EEAEAALKAPDAVMGNRFIKLW ANRD +PD INSGS V+VTSRG T VIPAQ KD QPI +NSPKP +NG V +KKLETLEQMKEELRKKQE+LEQKR DFRRQL KL+KQSSGVKGD TEQAAK+QKV IA DPAKASTP S P A PCT+G+TD +KSTEN+ SH P SK+QSC SAP G +PF++NKYKLDNRPTAFRVI PLPS FA + Sbjct: 526 QFSRREEAEAALKAPDAVMGNRFIKLWWANRDSVPDDGINSGSSVTVTSRGPTVFVIPAQAVVNRGGKDNLQPIAQKSNAVHGAAVPSVNSPKPSGVNGPKVQLPLQKKLETLEQMKEELRKKQEMLEQKRNDFRRQLDKLQKQSSGVKGDLPTEQAAKKQKVGIAADPAKASTPSLSEPGAPTTIPCTVGMTDKNKSTENVGSHGPTSNATMSLQESKSSKQQSCPSAPTG-YPFLMNKYKLDNRPTAFRVIPPLPSGFADV 787 HSP 2 Score: 154.066 bits (388), Expect = 2.053e-35 Identity = 102/156 (65.38%), Postives = 121/156 (77.56%), Query Frame = 1 Query: 1396 VDVLKEHFSQYSDLFSVELEDVENEDVMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISSNSINDPISKETSSA-PKEPLEADDIQTEEKLACSISQEV-ASDDGESENSDVKSFVEHKYLAEVSEHSPSPTSRVKE*SPKGKAC 1857 VDVLKEHF QY DL +VE+EDVEN++ M SE +N+CS ITY T SAE+AY N KCWQG+NLQF+WL SSNS NDP SKETSS+ PK LEA D+QTE +L S+S EV AS D ES+NS+ +SFVE+ L EVSEHS SP+S +KE SPKG AC Sbjct: 787 VDVLKEHFLQYGDLSAVEIEDVENDNDMGSEAMNNCSIVITYGTRWSAERAYVNGKCWQGNNLQFTWLTSSNSSNDPSSKETSSSTPKGTLEA-DVQTEGELEFSVSPEVIASGDKESKNSEGESFVENMALPEVSEHSSSPSSCMKE-SPKGDAC 940
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: A0A0D2QWE2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G264400 PE=4 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 4.976e-62 Identity = 158/252 (62.70%), Postives = 178/252 (70.63%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTASVIPAQ-----RKDYFQPIP--------------LNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGD--TEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENI-LSHSPKSKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHI 960 +FSR+EEAEAALK+PDAVMGNRFIKLW ANRD IPD + SGSG++V GLTA Q KD QP LNSP+P ++NG P +KKLETLEQMKEELRKKQE+LEQKR DFRRQL KL+KQSSG KGD TEQAAKRQKV IA DPAKAST SS P A ATPCT+ VTD +KSTEN+ L S SK S SA VG HP ++NKYKLDNRPTAF+VI PLP+ FA + Sbjct: 497 QFSRREEAEAALKSPDAVMGNRFIKLWWANRDSIPDDAVKSGSGIAVNPHGLTAPAFQVQPVATRGKDNLQPTAQKSNVIHDADLSPSLNSPRPVNLNGPKASPPLQKKLETLEQMKEELRKKQEMLEQKRNDFRRQLDKLQKQSSGAKGDLHTEQAAKRQKVGIAADPAKASTSSSSEPAAFVATPCTV-VTDKNKSTENLALQESTSSKHHSHPSAVVG-HPIMINKYKLDNRPTAFQVIPPLPAGFADV 746 HSP 2 Score: 106.301 bits (264), Expect = 2.180e-20 Identity = 56/108 (51.85%), Postives = 68/108 (62.96%), Query Frame = 1 Query: 1396 VDVLKEHFSQYSDLFSVELEDVENEDVMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISSNSINDPISKETSSAPKEPLEADDIQTEEKLA--CSIS 1713 VDVLK+HFSQY DL SVEL+DVE +D SE ++CS ITYST SAEKAYA+ KCW+ HNLQ SW +TSS + + D++T EKL CS S Sbjct: 746 VDVLKQHFSQYGDLVSVELQDVEKDDNTGSEASHNCSVLITYSTHHSAEKAYADGKCWKTHNLQLSW-------------QTSSKDQHSRKETDVETNEKLTACCSTS 840
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Match: A0A0B0NPE9_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_00793 PE=4 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 5.792e-59 Identity = 157/252 (62.30%), Postives = 180/252 (71.43%), Query Frame = 1 Query: 271 EFSRKEEAEAALKAPDAVMGNRFIKLWCANRDRIPDGDINSGSGVSVTSRGLTA-----SVIPAQRKDYFQP------------IP--LNSPKPHSMNGLMVPPAPRKKLETXXXXXXXXXXXXXXXXXXXXDFRRQLHKLEKQSSGVKGD--TEQAAKRQKVDIAVDPAKASTPRSSGPCASAATPCTMGVTDMDKSTENI-LSHSPKSKRQSCQSAPVGIHPFVLNKYKLDNRPTAFRVISPLPSDFAHI 960 +FSR+EEAEAALK+PDAVMGNRFIKLW ANRD IPD + SGS ++V GLTA ++ + KD QP +P LNSPKP ++NG P +KKLETLEQMKEELRKKQE+LEQKR DFRRQL KL+KQSSG KGD TEQAAKRQKV I D AKAST SS P A ATPCT+ +TD +KSTEN+ L S SK QS SA VG HP ++NKYKLDNRPTAFRVI PLP+ FA + Sbjct: 497 QFSRREEAEAALKSPDAVMGNRFIKLWWANRDSIPDDAVKSGSSIAVNPHGLTAPAFQVQLVATRGKDNLQPTAQKSNVVHDAEVPPSLNSPKPVNLNGPKASPPLQKKLETLEQMKEELRKKQEMLEQKRNDFRRQLDKLQKQSSGAKGDLHTEQAAKRQKVGIVTDTAKASTSSSSEPAAFVATPCTV-MTDKNKSTENLALQESTSSKHQSHPSAVVG-HPIMINKYKLDNRPTAFRVIPPLPAGFADV 746 HSP 2 Score: 107.071 bits (266), Expect = 1.222e-20 Identity = 59/108 (54.63%), Postives = 69/108 (63.89%), Query Frame = 1 Query: 1396 VDVLKEHFSQYSDLFSVELEDVENEDVMVSETLNDCSAHITYSTCRSAEKAYANSKCWQGHNLQFSWLISSNSINDPISKETSSAPKEPLEADDIQTEEKLA--CSIS 1713 VDVLK HFSQY DL VEL+DVE +D SE ++CS ITYST RSAEKAYA+ KCW+ HNLQFSW SSN + KET +++T EKL CS S Sbjct: 746 VDVLKRHFSQYGDLVFVELQDVEKDDNTGSEASHNCSVLITYSTHRSAEKAYADGKCWKTHNLQFSWQTSSNDQHS--RKET-----------NVETNEKLTACCSTS 840 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 2
BLAST of g.barbadense_cottongen_reftransV1_0092533 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092533 ID=g.barbadense_cottongen_reftransV1_0092533; Name=g.barbadense_cottongen_reftransV1_0092533; organism=Gossypium barbadense; type=contig; length=2170bpback to top |