Palmeri x K-101, F2 (2007)

Map Overview


Name	Palmeri x K-101, F2 (2007)
Species	Gossypium hirsutum x barbadense
Population type	F2
Genome group	AD
Map type	genetic
Map unit	cM
Maternal parent	Palmeri (unknown ID)
Paternal parent	AZK 101
Population size	57
Number of loci	2636
Number of QTL	329
Number of linkage groups	26
Publication	[view all]
Contact	Paterson, Andrew H.

Stock

Name

Type

Details

Palmeri x K-101, F2

population

Alias:	PK-F2
Description:	genetic mapping
Population size:	57
Secondary id:	cdbpop_000030
Pedigree:	Palmeri / AZK 101

Contact

Name

Details

Paterson, Andrew H.

First name:	Andrew
Last name:	Paterson
Title:	Director
Institution:	Univ. GA, Plant Genome Mapping Laboratory
Address:	111 Riverbend Road, Rm 228, Athens, GA 30602
Country:	United States
Email:	paterson@uga.edu
Last update:	19-Feb-2007

Publication


Year	Publications
1994	Reinisch A, Dong J, Brubaker C, Stelly D, Wendel J, Paterson A. A detailed RFLP map of cotton, Gossypium hirsutum X Gossypium barbadense: chromosome organization and evolution in a disomic polyploid genome. Genetics. 1994 Nov; 138(3):829-847.
2004	Rong J, Abbey C, Bowers JE, Brubaker CL, Chang C, Chee PW, Delmonte TA, Ding X, Garza JJ, Marler BS, Park CH, Pierce GJ, Rainey KM, Rastogi VK, Schulze SR, Trolinder NL, Wendel JF, Wilkins TA, Williams-Coplin TD, Wing RA, Wright RJ, Zhao X, Zhu L, Paterson AH. A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium). Genetics. 2004 Jan; 166(1):389-417.
2005	Rong J, Pierce G, Waghmare V, Rogers C, Desai A, Chee P, May O, Gannaway J, Wendel J, Wilkins T. Genetic mapping and comparative analysis of seven mutants related to seed fiber development in cotton. Theoretical and applied genetics. 2005; 111(6):1137-1146.

Map Loci

This map contains 2,636 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Palmeri x K-101, F2 (2007).chr04	A1638	A1638	marker_locus	108 cM
Palmeri x K-101, F2 (2007).chr04	Gate4AD10	Gate4AD10a	marker_locus	108 cM
Palmeri x K-101, F2 (2007).chr04	P11-38	P11_38	marker_locus	108 cM
Palmeri x K-101, F2 (2007).chr04	M16-125	M16_125a	marker_locus	108.9 cM
Palmeri x K-101, F2 (2007).chr04	Unig06G05	Unig06G05	marker_locus	108.9 cM
Palmeri x K-101, F2 (2007).chr04	A1543	A1543b	marker_locus	108.9 cM
Palmeri x K-101, F2 (2007).chr04	Coau1M07	Coau1M07b	marker_locus	108.9 cM
Palmeri x K-101, F2 (2007).chr04	Gate2BF01	Gate2BF01	marker_locus	108.9 cM
Palmeri x K-101, F2 (2007).chr04	pAR0966	pAR966a	marker_locus	109.1 cM
Palmeri x K-101, F2 (2007).chr04	pAR0219	pAR219a	marker_locus	109.3 cM
Palmeri x K-101, F2 (2007).chr04	Coau4E22	Coau4E22	marker_locus	109.5 cM
Palmeri x K-101, F2 (2007).chr04	pAR04-48	pAR4_48a	marker_locus	109.5 cM
Palmeri x K-101, F2 (2007).chr04	Unig25D03	Unig25D03	marker_locus	109.9 cM
Palmeri x K-101, F2 (2007).chr04	pAR0926	pAR926	marker_locus	110.2 cM
Palmeri x K-101, F2 (2007).chr04	Gate4DD06	Gate4DD06	marker_locus	112.1 cM
Palmeri x K-101, F2 (2007).chr04	pAR10C12	pAR10C12a	marker_locus	112.1 cM
Palmeri x K-101, F2 (2007).chr04	pAR08A12	PAR08A12	marker_locus	115.6 cM
Palmeri x K-101, F2 (2007).chr04	Unig25D11	Unig25D11	marker_locus	122.4 cM
Palmeri x K-101, F2 (2007).chr04	Coau2K12	Coau2K12	marker_locus	126.1 cM
Palmeri x K-101, F2 (2007).chr04	Unig22C05	Unig22C05a	marker_locus	130 cM
Palmeri x K-101, F2 (2007).chr04	A1310	A1310a	marker_locus	132.3 cM
Palmeri x K-101, F2 (2007).chr04	pAR0571	pAR571a	marker_locus	132.3 cM
Palmeri x K-101, F2 (2007).chr04	Unig06C08	Unig06C08	marker_locus	132.3 cM
Palmeri x K-101, F2 (2007).chr04	A1751	A1751a	marker_locus	134.6 cM
Palmeri x K-101, F2 (2007).chr04	A1763	A1763	marker_locus	134.6 cM

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Map QTL

This map contains 329 QTL:

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Linkage Group	Name	Type	Start	Stop	Peak
Palmeri x K-101, F2 (2007).chr19/lgD08	qFEL.PK-ch19.1	QTL	21.4 cM	40.3 cM	-
Palmeri x K-101, F2 (2007).chr19/lgD08	qFS.PK-ch19.1	QTL	12.9 cM	15.1 cM	-
Palmeri x K-101, F2 (2007).chr19/lgD08	qFF.PK-ch19.1	QTL	12.9 cM	14.9 cM	-
Palmeri x K-101, F2 (2007).chr10	qDM.PK-F2_ch10	QTL	113.2 cM	125.2 cM	-
Palmeri x K-101, F2 (2007).chr02	qDM.PK-F2_ch02	QTL	51.4 cM	60.3 cM	-
Palmeri x K-101, F2 (2007).chr22	qDM.PK-F2_ch22	QTL	42.6 cM	45.5 cM	-
Palmeri x K-101, F2 (2007).chr09	qDM.PK-F2_ch09	QTL	0 cM	4.5 cM	-
Palmeri x K-101, F2 (2007).chr11/lgA03	qHI.PK-F2_ch11.1	QTL	0 cM	25 cM	-
Palmeri x K-101, F2 (2007).chr11/lgA03	qHI.PK-F2_ch11.2	QTL	120.9 cM	198 cM	-
Palmeri x K-101, F2 (2007).chr14	qHI.PK-F2_ch14	QTL	90.8 cM	104.4 cM	-
Palmeri x K-101, F2 (2007).chr18	qHI.PK-F2_ch18.1	QTL	41.6 cM	46.2 cM	-
Palmeri x K-101, F2 (2007).chr18	qHI.PK-F2_ch18.2	QTL	73 cM	81 cM	-
Palmeri x K-101, F2 (2007).chr02	qHI.PK-F2_ch02	QTL	59.1 cM	74.8 cM	-
Palmeri x K-101, F2 (2007).chr22	qHI.PK-F2_ch22	QTL	4.6 cM	14.4 cM	-
Palmeri x K-101, F2 (2007).chr26	qHI.PK-F2_ch26	QTL	36.7 cM	37.8 cM	-
Palmeri x K-101, F2 (2007).chr06	qHI.PK-F2_ch06	QTL	60.4 cM	102.1 cM	-
Palmeri x K-101, F2 (2007).chr08/lgA02	qHI.PK-F2_ch08	QTL	43.2 cM	59.3 cM	-
Palmeri x K-101, F2 (2007).chr09	qHI.PK-F2_ch09	QTL	6.1 cM	27.6 cM	-
Palmeri x K-101, F2 (2007).chr01	qOP.PK-F2_ch01	QTL	119.4 cM	132.4 cM	-
Palmeri x K-101, F2 (2007).chr13/lgA01	qOP.PK-F2_ch13	QTL	102.5 cM	118.3 cM	-
Palmeri x K-101, F2 (2007).chr14	qOP.PK-F2_ch14	QTL	141.3 cM	163.3 cM	-
Palmeri x K-101, F2 (2007).chr16	qOP.PK-F2_ch16	QTL	52.8 cM	52.9 cM	-
Palmeri x K-101, F2 (2007).chr19/lgD08	qOP.PK-F2_ch19	QTL	190 cM	207.8 cM	-
Palmeri x K-101, F2 (2007).chr20	qOP.PK-F2_ch20	QTL	83.8 cM	96.3 cM	-
Palmeri x K-101, F2 (2007).chr21/lgD02	qOP.PK-F2_ch21	QTL	176.1 cM	187.5 cM	-

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Palmeri x K-101, F2 (2007)