g.barbadense_cottongen_reftransV1_0098082, g.barbadense_cottongen_reftransV1_0098082 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: A0A0D2RHD5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G181500 PE=4 SV=1) HSP 1 Score: 240.35 bits (612), Expect = 3.452e-70 Identity = 158/163 (96.93%), Postives = 160/163 (98.16%), Query Frame = 1 Query: 175 MESCFTKYWHSKTLFTXXXXXXXXXXXXXXXXXXXKRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQVXXXXXXHN 663 MESCFTK WHSK LFTSLYSLRRSSISIHSVRNSVKRAYDGLLLDAAGTLLQLSKPVEETYAS+GAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVY+HYGNGYAWRLPDGASETIW LKNAGGHIHQVFLFFFFHN Sbjct: 1 MESCFTKCWHSKALFTSLYSLRRSSISIHSVRNSVKRAYDGLLLDAAGTLLQLSKPVEETYASLGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYQHYGNGYAWRLPDGASETIWRLKNAGGHIHQVFLFFFFHN 163
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: A0A0D2U5A6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G181500 PE=4 SV=1) HSP 1 Score: 237.269 bits (604), Expect = 4.715e-68 Identity = 149/154 (96.75%), Postives = 151/154 (98.05%), Query Frame = 1 Query: 175 MESCFTKYWHSKTLFTXXXXXXXXXXXXXXXXXXXKRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQ 636 MESCFTK WHSK LFTSLYSLRRSSISIHSVRNSVKRAYDGLLLDAAGTLLQLSKPVEETYAS+GAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVY+HYGNGYAWRLPDGASETIW LKNAGGHIHQ Sbjct: 1 MESCFTKCWHSKALFTSLYSLRRSSISIHSVRNSVKRAYDGLLLDAAGTLLQLSKPVEETYASLGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYQHYGNGYAWRLPDGASETIWRLKNAGGHIHQ 154 HSP 2 Score: 73.1738 bits (178), Expect = 6.128e-11 Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 3 Query: 1998 LRFLAIIQSQKE**YIPCQRIYQKIFGIVVDQIDVEADKVVHVGDDLKADKVGANAVGIDCW 2183 RF A+I S + + ++ +IF +DQIDVEADKVVHVGDDLKADKVGANAVGIDCW Sbjct: 157 FRFDAVIISSE----VGYEKPDARIFKAALDQIDVEADKVVHVGDDLKADKVGANAVGIDCW 214
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: A0A0D2PWY8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G181500 PE=4 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 1.870e-65 Identity = 145/155 (93.55%), Postives = 148/155 (95.48%), Query Frame = 1 Query: 175 MESCFTKYWHSKTLFTXXXXXXXXXXXXXXXXXXXKRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQV 639 MESCFTK WHSK LFTSLYSLRRSSISIHSVRNSVKRAYDGLLLDAAGTLLQLSKPVEETYAS+GAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVY+HYGNGYAWRLPDGASETIW LKNAG + V Sbjct: 1 MESCFTKCWHSKALFTSLYSLRRSSISIHSVRNSVKRAYDGLLLDAAGTLLQLSKPVEETYASLGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYQHYGNGYAWRLPDGASETIWRLKNAGVKVAVV 155
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: A0A0D2T2I3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G181500 PE=4 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 5.124e-65 Identity = 145/155 (93.55%), Postives = 148/155 (95.48%), Query Frame = 1 Query: 175 MESCFTKYWHSKTLFTXXXXXXXXXXXXXXXXXXXKRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQV 639 MESCFTK WHSK LFTSLYSLRRSSISIHSVRNSVKRAYDGLLLDAAGTLLQLSKPVEETYAS+GAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVY+HYGNGYAWRLPDGASETIW LKNAG + V Sbjct: 1 MESCFTKCWHSKALFTSLYSLRRSSISIHSVRNSVKRAYDGLLLDAAGTLLQLSKPVEETYASLGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYQHYGNGYAWRLPDGASETIWRLKNAGVKVAVV 155 HSP 2 Score: 70.8626 bits (172), Expect = 3.369e-10 Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 3 Query: 2067 KIFGIVVDQIDVEADKVVHVGDDLKADKVGANAVGIDCW 2183 +IF +DQIDVEADKVVHVGDDLKADKVGANAVGIDCW Sbjct: 192 RIFKAALDQIDVEADKVVHVGDDLKADKVGANAVGIDCW 230
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: A0A0D2T865_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G181500 PE=4 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 1.894e-64 Identity = 145/155 (93.55%), Postives = 148/155 (95.48%), Query Frame = 1 Query: 175 MESCFTKYWHSKTLFTXXXXXXXXXXXXXXXXXXXKRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQV 639 MESCFTK WHSK LFTSLYSLRRSSISIHSVRNSVKRAYDGLLLDAAGTLLQLSKPVEETYAS+GAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVY+HYGNGYAWRLPDGASETIW LKNAG + V Sbjct: 1 MESCFTKCWHSKALFTSLYSLRRSSISIHSVRNSVKRAYDGLLLDAAGTLLQLSKPVEETYASLGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYQHYGNGYAWRLPDGASETIWRLKNAGVKVAVV 155 HSP 2 Score: 70.8626 bits (172), Expect = 4.496e-10 Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 3 Query: 2067 KIFGIVVDQIDVEADKVVHVGDDLKADKVGANAVGIDCW 2183 +IF +DQIDVEADKVVHVGDDLKADKVGANAVGIDCW Sbjct: 192 RIFKAALDQIDVEADKVVHVGDDLKADKVGANAVGIDCW 230
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: A0A061EAL8_THECC (Haloacid dehalogenase-like hydrolase superfamily protein OS=Theobroma cacao GN=TCM_011756 PE=4 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 1.032e-50 Identity = 119/159 (74.84%), Postives = 133/159 (83.65%), Query Frame = 1 Query: 169 QKMESCFTKYWHSKTLFTXXX--XXXXXXXXXXXXXXXXKRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQV 639 QKME+C TK + +L +L SI SVRNSVK+AYDGLLLDAAGTLLQL KPVEETYA+IGAK+GLKL+SAEIK+GFKRAFAAPWP+KLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHY NG AWRLPDGA +TI++LKNAG + V Sbjct: 54 QKMEACLTKCCNINSLLRALNPFRSSSMSIHFRSVRNSVKKAYDGLLLDAAGTLLQLPKPVEETYAAIGAKYGLKLSSAEIKQGFKRAFAAPWPEKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYANGDAWRLPDGAYDTIFVLKNAGVKVAVV 212
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: M4DT20_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra019663 PE=4 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 3.032e-43 Identity = 89/114 (78.07%), Postives = 102/114 (89.47%), Query Frame = 1 Query: 280 KRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAG 621 KRAYDGLLLDA GTLLQLS+PV ETYAS+G K+GLK AEIK+GFKRAFA+ WP+KLRY+GDG+PFWKLVVSEATGCS++DYFEEVY++Y NG AW LPDGA ET+ LLKNAG Sbjct: 45 KRAYDGLLLDAGGTLLQLSEPVHETYASLGLKYGLKTTPAEIKQGFKRAFASSWPEKLRYQGDGRPFWKLVVSEATGCSDNDYFEEVYQYYANGEAWHLPDGAYETMSLLKNAG 158 HSP 2 Score: 46.2098 bits (108), Expect = 3.032e-43 Identity = 21/30 (70.00%), Postives = 27/30 (90.00%), Query Frame = 3 Query: 723 MVSDGTVKVAVVSNFDTRLRKVLKELNVID 812 ++ + VK+AVVSNFDTRLRK+LK+LNVID Sbjct: 153 LLKNAGVKMAVVSNFDTRLRKLLKDLNVID 182
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: A0A0D3CA27_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 2.246e-42 Identity = 87/114 (76.32%), Postives = 101/114 (88.60%), Query Frame = 1 Query: 280 KRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAG 621 KRAYDGLLLDA GTLLQLS+PV ETYAS+G K+GLK AEIK+GFKR FA+ WP+KLRY+GDG+PFWKLVVSEATGCS++DYFEEVY++Y NG AW LP+GA ET+ LLKNAG Sbjct: 45 KRAYDGLLLDAGGTLLQLSEPVHETYASLGQKYGLKTTPAEIKQGFKRVFASSWPEKLRYQGDGRPFWKLVVSEATGCSDNDYFEEVYQYYANGEAWHLPEGAYETMSLLKNAG 158 HSP 2 Score: 46.595 bits (109), Expect = 2.246e-42 Identity = 21/30 (70.00%), Postives = 27/30 (90.00%), Query Frame = 3 Query: 723 MVSDGTVKVAVVSNFDTRLRKVLKELNVID 812 ++ + VK+AVVSNFDTRLRK+LK+LNVID Sbjct: 153 LLKNAGVKMAVVSNFDTRLRKLLKDLNVID 182
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: A0A078HLI6_BRANA (BnaC05g10540D protein OS=Brassica napus GN=BnaC05g10540D PE=4 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 2.400e-42 Identity = 87/114 (76.32%), Postives = 101/114 (88.60%), Query Frame = 1 Query: 280 KRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAG 621 KRAYDGLLLDA GTLLQLS+PV ETYAS+G K+GLK AEIK+GFKR FA+ WP+KLRY+GDG+PFWKLVVSEATGCS++DYFEEVY++Y NG AW LP+GA ET+ LLKNAG Sbjct: 45 KRAYDGLLLDAGGTLLQLSEPVHETYASLGQKYGLKTTPAEIKQGFKRVFASSWPEKLRYQGDGRPFWKLVVSEATGCSDNDYFEEVYQYYANGEAWHLPEGAYETMSLLKNAG 158 HSP 2 Score: 46.595 bits (109), Expect = 2.400e-42 Identity = 21/30 (70.00%), Postives = 27/30 (90.00%), Query Frame = 3 Query: 723 MVSDGTVKVAVVSNFDTRLRKVLKELNVID 812 ++ + VK+AVVSNFDTRLRK+LK+LNVID Sbjct: 153 LLKNAGVKMAVVSNFDTRLRKLLKDLNVID 182
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Match: A0A078IGH7_BRANA (BnaA06g09100D protein OS=Brassica napus GN=BnaA06g09100D PE=4 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 7.300e-41 Identity = 91/120 (75.83%), Postives = 105/120 (87.50%), Query Frame = 1 Query: 280 KRAYXXXXXXXXXXXXXXSKPVEETYASIGAKHGLKLNSAEIKKGFKRAFAAPWPDKLRYEGDGKPFWKLVVSEATGCSNDDYFEEVYEHYGNGYAWRLPDGASETIWLLKNAGGHIHQV 639 KRAYDGLLLDA GTLLQLS+PV ETYAS+G K+GLK AEIK+GFKRAFA+PWP+KLRY+GDG+PFWKLVVSEATGCS++DYFEEVY++Y NG AW LPDGA ET+ LLKNAG + V Sbjct: 46 KRAYDGLLLDAGGTLLQLSEPVHETYASLGLKYGLKTTPAEIKQGFKRAFASPWPEKLRYQGDGRPFWKLVVSEATGCSDNDYFEEVYQYYSNGEAWHLPDGAYETMSLLKNAGVKMAVV 165 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0098082 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0098082 ID=g.barbadense_cottongen_reftransV1_0098082; Name=g.barbadense_cottongen_reftransV1_0098082; organism=Gossypium barbadense; type=contig; length=2708bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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