g.barbadense_cottongen_reftransV1_0094771, g.barbadense_cottongen_reftransV1_0094771 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: CTF64_ARATH (Cleavage stimulating factor 64 OS=Arabidopsis thaliana GN=CSTF64 PE=1 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 2.808e-49 Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = -2 Query: 1081 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1362 +SSQ RCVFVGNIPYDATEEQL EIC EVGPVVSFRLV DRETGKPKGYGFCEYKDEETALSARRNLQ YEINGRQLRVDFAENDKG+D+ R+Q Sbjct: 4 SSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQSYEINGRQLRVDFAENDKGTDKTRDQ 97
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: CSTF2_BOVIN (Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 8.723e-31 Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = -2 Query: 1078 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQV 1347 R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA RNL G E +GR LRVD A S++N+E++ Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA----ASEKNKEEL 101
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: CSTF2_MOUSE (Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1 SV=2) HSP 1 Score: 131.724 bits (330), Expect = 9.828e-31 Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = -2 Query: 1078 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQV 1347 R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA RNL G E +GR LRVD A S++N+E++ Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA----ASEKNKEEL 101
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: CSTF2_HUMAN (Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 1.066e-30 Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = -2 Query: 1078 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQV 1347 R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA RNL G E +GR LRVD A S++N+E++ Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA----SEKNKEEL 101
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: CSTF2_PONAB (Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 1.126e-30 Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = -2 Query: 1078 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQV 1347 R VFVGNIPY+ATEEQL +I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA RNL G E +GR LRVD A S++N+E++ Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA----SEKNKEEL 101
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: CSTFT_HUMAN (Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens GN=CSTF2T PE=1 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 4.792e-29 Identity = 63/90 (70.00%), Postives = 73/90 (81.11%), Query Frame = -2 Query: 1078 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQV 1347 R VFVGNIPY+ATEEQL +I EVG VVSFRLV DRETGKPKGYGFCEY+D+ETALSA RNL G E +GR LRVD A S++N+E++ Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA----SEKNKEEL 101
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: CSTFT_MOUSE (Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus GN=Cstf2t PE=1 SV=2) HSP 1 Score: 126.716 bits (317), Expect = 5.801e-29 Identity = 63/90 (70.00%), Postives = 73/90 (81.11%), Query Frame = -2 Query: 1078 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQV 1347 R VFVGNIPY+ATEEQL +I EVG VVSFRLV DRETGKPKGYGFCEY+D+ETALSA RNL G E +GR LRVD A S++N+E++ Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA----ASEKNKEEL 101
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: YKCG_SCHPO (Uncharacterized RNA-binding protein C644.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.16 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.922e-23 Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = -2 Query: 1105 CVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDK 1344 V+VGNIPY+ EEQ+I+I ++ GPV SF+LVID E+G+PKGYGFCEY D TA SA RNL Y+ R+LRVDF D+ Sbjct: 6 VVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNNYDAGTRRLRVDFPTADQ 85
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: CTF1_SCHPO (Cleavage and termination factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ctf1 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 2.322e-21 Identity = 45/86 (52.33%), Postives = 59/86 (68.60%), Query Frame = -2 Query: 1108 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 1365 M+ + VFVGNIPYD +E+Q+ EI +VGPV +F+LV+D ETG KGYGFCE+ D ET A R L E+ R++RV+F ND Sbjct: 1 MSMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFPSND 86
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: RNA15_YEAST (mRNA 3'-end-processing protein RNA15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNA15 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.309e-18 Identity = 36/80 (45.00%), Postives = 59/80 (73.75%), Query Frame = -2 Query: 1111 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 1350 R V++G+IPYD TEEQ++++C VGPV++ +++ D +TG+ KGY F E++D E++ SA RNL GY++ R L+ ++ N Sbjct: 17 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 96
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2TVM8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G260200 PE=4 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 8.755e-56 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ Sbjct: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2TS08_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G260200 PE=4 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 1.470e-55 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ Sbjct: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2UUA6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G260200 PE=4 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 1.699e-55 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ Sbjct: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2QNG4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G260200 PE=4 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 1.723e-55 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ Sbjct: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A061FSB3_THECC (Cleavage stimulation factor 64 kDa subunit, putative OS=Theobroma cacao GN=TCM_036589 PE=4 SV=1) HSP 1 Score: 209.534 bits (532), Expect = 1.897e-55 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ Sbjct: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0B0NCV1_GOSAR (Cleavage stimulation factor subunit 2 OS=Gossypium arboreum GN=F383_15609 PE=4 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 2.560e-55 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ Sbjct: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2R774_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G131000 PE=4 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 2.588e-55 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ Sbjct: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2V9M9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G131000 PE=4 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 2.793e-55 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ Sbjct: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2UBF0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G131000 PE=4 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 3.472e-55 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ Sbjct: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2SS01_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G131000 PE=4 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 5.904e-55 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ Sbjct: 1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
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BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0094771 ID=g.barbadense_cottongen_reftransV1_0094771; Name=g.barbadense_cottongen_reftransV1_0094771; organism=Gossypium barbadense; type=contig; length=2284bpback to top |