g.barbadense_cottongen_reftransV1_0094771, g.barbadense_cottongen_reftransV1_0094771 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0094771
Unique Nameg.barbadense_cottongen_reftransV1_0094771
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2284
Homology
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BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: CTF64_ARATH (Cleavage stimulating factor 64 OS=Arabidopsis thaliana GN=CSTF64 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.808e-49
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = -2 
Query: 1081 ASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1362
            +SSQ RCVFVGNIPYDATEEQL EIC EVGPVVSFRLV DRETGKPKGYGFCEYKDEETALSARRNLQ YEINGRQLRVDFAENDKG+D+ R+Q
Sbjct:    4 SSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQSYEINGRQLRVDFAENDKGTDKTRDQ 97
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: CSTF2_BOVIN (Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 8.723e-31
Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = -2 
Query: 1078 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQV 1347
            R VFVGNIPY+ATEEQL +I  EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA RNL G E +GR LRVD A     S++N+E++
Sbjct:   16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA----ASEKNKEEL 101
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: CSTF2_MOUSE (Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 9.828e-31
Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = -2 
Query: 1078 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQV 1347
            R VFVGNIPY+ATEEQL +I  EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA RNL G E +GR LRVD A     S++N+E++
Sbjct:   16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA----ASEKNKEEL 101
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: CSTF2_HUMAN (Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.066e-30
Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = -2 
Query: 1078 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQV 1347
            R VFVGNIPY+ATEEQL +I  EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA RNL G E +GR LRVD A     S++N+E++
Sbjct:   16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA----SEKNKEEL 101
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: CSTF2_PONAB (Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.126e-30
Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = -2 
Query: 1078 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQV 1347
            R VFVGNIPY+ATEEQL +I  EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA RNL G E +GR LRVD A     S++N+E++
Sbjct:   16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA----SEKNKEEL 101
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: CSTFT_HUMAN (Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens GN=CSTF2T PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.792e-29
Identity = 63/90 (70.00%), Postives = 73/90 (81.11%), Query Frame = -2 
Query: 1078 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQV 1347
            R VFVGNIPY+ATEEQL +I  EVG VVSFRLV DRETGKPKGYGFCEY+D+ETALSA RNL G E +GR LRVD A     S++N+E++
Sbjct:   16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA----SEKNKEEL 101
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: CSTFT_MOUSE (Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus GN=Cstf2t PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 5.801e-29
Identity = 63/90 (70.00%), Postives = 73/90 (81.11%), Query Frame = -2 
Query: 1078 RCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQV 1347
            R VFVGNIPY+ATEEQL +I  EVG VVSFRLV DRETGKPKGYGFCEY+D+ETALSA RNL G E +GR LRVD A     S++N+E++
Sbjct:   16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA----ASEKNKEEL 101
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: YKCG_SCHPO (Uncharacterized RNA-binding protein C644.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC644.16 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.922e-23
Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = -2 
Query: 1105 CVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDK 1344
             V+VGNIPY+  EEQ+I+I ++ GPV SF+LVID E+G+PKGYGFCEY D  TA SA RNL  Y+   R+LRVDF   D+
Sbjct:    6 VVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNNYDAGTRRLRVDFPTADQ 85
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: CTF1_SCHPO (Cleavage and termination factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ctf1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.322e-21
Identity = 45/86 (52.33%), Postives = 59/86 (68.60%), Query Frame = -2 
Query: 1108 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEND 1365
            M+ +    VFVGNIPYD +E+Q+ EI  +VGPV +F+LV+D ETG  KGYGFCE+ D ET   A R L   E+  R++RV+F  ND
Sbjct:    1 MSMTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFPSND 86
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Match: RNA15_YEAST (mRNA 3'-end-processing protein RNA15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNA15 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.309e-18
Identity = 36/80 (45.00%), Postives = 59/80 (73.75%), Query Frame = -2 
Query: 1111 HRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAEN 1350
             R V++G+IPYD TEEQ++++C  VGPV++ +++ D +TG+ KGY F E++D E++ SA RNL GY++  R L+  ++ N
Sbjct:   17 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 96
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BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2TVM8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G260200 PE=4 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 8.755e-56
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 
Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365
            MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ
Sbjct:    1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2TS08_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G260200 PE=4 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.470e-55
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 
Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365
            MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ
Sbjct:    1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2UUA6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G260200 PE=4 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.699e-55
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 
Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365
            MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ
Sbjct:    1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2QNG4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G260200 PE=4 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.723e-55
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 
Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365
            MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ
Sbjct:    1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A061FSB3_THECC (Cleavage stimulation factor 64 kDa subunit, putative OS=Theobroma cacao GN=TCM_036589 PE=4 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.897e-55
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 
Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365
            MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ
Sbjct:    1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0B0NCV1_GOSAR (Cleavage stimulation factor subunit 2 OS=Gossypium arboreum GN=F383_15609 PE=4 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.560e-55
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 
Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365
            MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ
Sbjct:    1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2R774_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G131000 PE=4 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 2.588e-55
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 
Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365
            MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ
Sbjct:    1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2V9M9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G131000 PE=4 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 2.793e-55
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 
Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365
            MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ
Sbjct:    1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2UBF0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G131000 PE=4 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 3.472e-55
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 
Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365
            MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ
Sbjct:    1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
[Close]
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Match: A0A0D2SS01_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G131000 PE=4 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.904e-55
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2 
Query: 1081 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 1365
            MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ
Sbjct:    1 MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQ 95
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25
Match NameE-valueIdentityDescription
CTF64_ARATH2.808e-4989.36Cleavage stimulating factor 64 OS=Arabidopsis thal... [more]
CSTF2_BOVIN8.723e-3171.11Cleavage stimulation factor subunit 2 OS=Bos tauru... [more]
CSTF2_MOUSE9.828e-3171.11Cleavage stimulation factor subunit 2 OS=Mus muscu... [more]
CSTF2_HUMAN1.066e-3071.11Cleavage stimulation factor subunit 2 OS=Homo sapi... [more]
CSTF2_PONAB1.126e-3071.11Cleavage stimulation factor subunit 2 OS=Pongo abe... [more]
CSTFT_HUMAN4.792e-2970.00Cleavage stimulation factor subunit 2 tau variant ... [more]
CSTFT_MOUSE5.801e-2970.00Cleavage stimulation factor subunit 2 tau variant ... [more]
YKCG_SCHPO1.922e-2360.00Uncharacterized RNA-binding protein C644.16 OS=Sch... [more]
CTF1_SCHPO2.322e-2152.33Cleavage and termination factor 1 OS=Schizosacchar... [more]
RNA15_YEAST1.309e-1845.00mRNA 3'-end-processing protein RNA15 OS=Saccharomy... [more]

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BLAST of g.barbadense_cottongen_reftransV1_0094771 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2TVM8_GOSRA8.755e-56100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2TS08_GOSRA1.470e-55100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2UUA6_GOSRA1.699e-55100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QNG4_GOSRA1.723e-55100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061FSB3_THECC1.897e-55100.00Cleavage stimulation factor 64 kDa subunit, putati... [more]
A0A0B0NCV1_GOSAR2.560e-55100.00Cleavage stimulation factor subunit 2 OS=Gossypium... [more]
A0A0D2R774_GOSRA2.588e-55100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2V9M9_GOSRA2.793e-55100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2UBF0_GOSRA3.472e-55100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2SS01_GOSRA5.904e-55100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 89..108
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 60..83
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 84..88
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..59
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 109..145
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.535
NoneNo IPR availableTMHMMTMhelixcoord: 89..111
NoneNo IPR availableTMHMMTMhelixcoord: 126..143
NoneNo IPR availableTMHMMTMhelixcoord: 60..82

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0094771 ID=g.barbadense_cottongen_reftransV1_0094771; Name=g.barbadense_cottongen_reftransV1_0094771; organism=Gossypium barbadense; type=contig; length=2284bp
GTGGACTGCTTGGCCTCCTAGTTGTTTTTGAGGGTCAAAGTTTGTTGCCA
GTCCAGGTCCACCACGGCCCTGCAATAAAACAAAATTCACTGTTTAAGCT
TATAAATAAAATCTAATTTTGAAAAACCAAAATATCAAACCAAACAGAAG
GAAGAAAACCATTATATTGAAGAAATATAATCCAAAGCAGTAGGATAGTG
CATGTACATGGGCTTTTGTTGCATTGGAATAAACCTCAGTTACCACCAAG
GTTATAGACCAGAGAGTTAGATTGTCAGTATGAAGCATGATAGTAGATCT
ATCATCCAATAGAATGGTTCAAGCCAAATAGCAAACTTTAAAAGTCCCTG
AAATATTTAGCAAACATATCCTTGCAAGCACATCACAACTATGCGTTTAC
ATAAGCATAAATAACTTTATCACAATTTGTATTTTCCTATAATTTCTGCG
ATGACAGTCTAATATAGAAGGCTGAAGGCTTGTCCTAGATTTAATGATTA
ATCTCTCTTTCTTTCAGAAGGGATGTGAATGTGGAGGCATTAGTCCATGA
TATCAAGTTCATTGCAGCTTTTTTGTCCTTTCTATCACTTTTTTTAAGAA
CTAGAATATATTACCTGATAAAATAATAAACATACAGGAATTCAAAAATT
AAAAACCTTATAAGCGTAACCTGAAGCACCAAGTAATACATACACAAGAG
CAAACATCTTTTTATATCATCCAACAGATCAAAGTAAATTTCATGCATGA
GAGCCTAGGCATTAGCATAAAAATTACATAGACCATCCATTAGCACCAAT
TCAGATGTATAGATATCACATAGGAAACATACTCTGCCAAGGTAACTGAA
ATTACACTTTAAAATACAGATATAAACAGTTTGGAATGGAGGGAAATTGG
GTATTTGTGGGCTTAAATTAAATTAATCAATACTAAATAGCCACCTACAC
TGCCTTTGTCATCAAAACCAGTGTTCATATAATCACATCTAACCAATGTC
ACTGTGAGAAGAGAAACTATGACGGTGCTAAATTATCACCCTGATGAAAA
AAATAAAAGATGCAGAAAAAAAGAGTACACCTGTTCTCGGTTTCGATCAG
AGCCTTTGTCATTTTCAGCAAAATCAACTCGCAACTGCCGGCCATTGATC
TCATAACCTTGAAGATTCCTTCGTGCACTTAGAGCTGTCTCCTCATCCTT
GTATTCACAGAACCCATAACCTTTTGGTTTACCAGTTTCTCTATCAATAA
CCAATCTGAAAGAAACAACCGGGCCAACCTCCCTGCAGATTTCTATAAGC
TGTTCTTCAGTAGCATCATATGGTATATTCCCCACAAAAACGCAGCGATG
TTGAGATGAGGCCATGAAAAGGGGGGCGAAAATCAATAGGAGGAGAAGGT
GAAGCAAAGCTGAAGCTTCATCTTCTTACTCCGCATCGCTTTTTTCTTCT
GCTTATTTCAGTCCAATTATATGAAGAGATAAAAAAGAACAGGTACAAGT
GTATTTCGAATTCGATGGTTCCAGCGGTCAATTGGGTTTTCTGCAAGGAT
TTATTATTTTCTCAGTGCAAGGAAAGAAACGAAGATTTTCTGTTGTTTTT
ACTCTTTTTTTTCTTTGAACTTTCTTCTGTGTTCTTTTGTCCTTTTCATC
TTTACTATTTTAATTCTTATAGAATAATAAATATTCCCTTCATCTCTCTC
CATTTGCTTCTCACCTTTGCTTCTCTCTTTTTTCAACCAACCATGGCCTC
TTCTTCAATCCAAGAAGGTAACACTATTGACTCTTCCTTGACTCATCCGT
ATGTTTTCACTATTTTCTTTTTCATTCTTTTTTGTTGCAAAGTTTGAAAC
GGATCCTTTAGCTTAATGATTCACTTTTGATTTATGGGTATTCATTCTTT
CTTCAAAATATTTAATGGGTTCTTTTTAAAATAGGAAAACAGCTTAGTTC
AGTTGACTTACTGTTTTTTTAATTGAATTTTAGCTGAACTTTAGCTTAGT
ATATATCGAGATCCCTTGGAGCTTAGTTTTTTAGAAATAATTTGGGAAGT
TGGGTTCTTTGATTTTGAATTATGTGGTGGTTTTAGTTAGAAATCAAGAA
TAAAGATGAAGAAATTGGAAGGAGGCATCGTTTTTGGTAATTGATTCTTT
GATAGGAGCTGAAAATTCGAATTTCTAATTTTTGGTGGTGGGGTTAAGGA
TTATGACAAAAGTATGGTTTGTTTAGTAATCATATTGATTAGTGATTGAT
TGTTGATTGTTAAGGTGGAGATATGGATCTGGAG
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