g.barbadense_cottongen_reftransV1_0095085, g.barbadense_cottongen_reftransV1_0095085 (contig) Gossypium barbadense

Overview
Nameg.barbadense_cottongen_reftransV1_0095085
Unique Nameg.barbadense_cottongen_reftransV1_0095085
Typecontig
OrganismGossypium barbadense (Sea Island cotton)
Sequence length2724
Homology
BLAST of g.barbadense_cottongen_reftransV1_0095085 vs. ExPASy TrEMBL
Match: A0A0D2V9Y6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G135000 PE=4 SV=1)

HSP 1 Score: 907.901 bits (2345), Expect = 0.000e+0
Identity = 470/476 (98.74%), Postives = 472/476 (99.16%), Query Frame = -1
Query: 1009 MSTKSFSIHWNLKSQFPNTCFLPFARRCSLNAFPLSFFHCPRIHSPKPYLPQPPLVQSNPYNQTPHDVTQARESISEYLQELGLSLEDXXXXXXXSPKYVQMLVDGVKELEEWNAWNDSNGEGDSLGFKEMIIYMAKEKGDNGKVAFLESVGLPLSSAMSVARYLSSESLPSIIRKVKYMKENIFSAGDDKGGLSGKNARRMMMHLSISSDEDVQQTLSFFEKIEARRGGLEMLGLVDATXXXXXXXXXXXXXXPVESHLEPMVEFLENIGVPRRSMGNVFLLFPPILFYKIQGIKSKFSTFEKVGAAYKDIGKMLLKYPWIFSTSIQENYEQILLFFEEEKIPKTSVDRAIRSWPHLLGCSTSKLKLMVDQFGELGIRNKKFGRVIAKSPQLLLKKPQEFLQVVLFFEGLGLDQETVGKLVSRCPEVFAANIDTTLKKKVELLAEFGISNDHLPRVIKKYPEVLVSDVNKTLLPR 2436
            MSTKSFSIHWNLKSQFPNTCFLPFARRCSLNAFPLSFFHCPRIHSPKPYLPQPPLVQSNPYNQTPHD+TQARESISEYLQELGLSLEDSISISSNSPKYVQMLVDGVKELEEWNAWNDSNGEGDSLGFKEMIIYMAKEKGDNGKVAFLESVGLPLSSAMSVARYLSSESLPSIIRKVKYMKENIFSAGDDKGGLSGKNARRMMMHLSISSDEDVQQTLSFFEKIEARRGGLE+LGLVDATFRFLLESFPRLLLLPVESHLEPMVEFLENIGVPRRSMGNVFLLFPPILFYKIQGIKSKF TFEKVGAAYKDIGKMLLKYPWI STSIQENYEQILLFFEEEKIPKTSVDRAIRSWPHLLGCSTSKLKLMVDQFGELGIRNKKFGRVIAKSPQLLLKKPQEFLQVVLFFE LGL QETVGKLVSRCPEVFAANIDTTLKKKVELLAEFGISNDHLPRVIKKYPEVLVSDVNKTLLPR
Sbjct:    1 MSTKSFSIHWNLKSQFPNTCFLPFARRCSLNAFPLSFFHCPRIHSPKPYLPQPPLVQSNPYNQTPHDLTQARESISEYLQELGLSLEDSISISSNSPKYVQMLVDGVKELEEWNAWNDSNGEGDSLGFKEMIIYMAKEKGDNGKVAFLESVGLPLSSAMSVARYLSSESLPSIIRKVKYMKENIFSAGDDKGGLSGKNARRMMMHLSISSDEDVQQTLSFFEKIEARRGGLEILGLVDATFRFLLESFPRLLLLPVESHLEPMVEFLENIGVPRRSMGNVFLLFPPILFYKIQGIKSKFLTFEKVGAAYKDIGKMLLKYPWILSTSIQENYEQILLFFEEEKIPKTSVDRAIRSWPHLLGCSTSKLKLMVDQFGELGIRNKKFGRVIAKSPQLLLKKPQEFLQVVLFFEELGLAQETVGKLVSRCPEVFAANIDTTLKKKVELLAEFGISNDHLPRVIKKYPEVLVSDVNKTLLPR 476          

HSP 2 Score: 223.787 bits (569), Expect = 2.247e-59
Identity = 108/113 (95.58%), Postives = 110/113 (97.35%), Query Frame = -2
Query:  171 RINYLMEMGLSRRQIALMIHRFPPLLGYSIEEVLKPKLNFPLNTIGKPAKDVVGYPRYFSYSLEKKIKPRFWVLKGKNIECSLEVMLGKNDEEFAAEFMGVGRMLVSPSATFQ 509
            RINYLMEMGLSRR+IALMI RFPPLLGYSI+EVLKPKLNF LNTIGKP KDVVGYPRYFSYSLEKKIKPRFWVLKGKNIECSLEVMLGKNDEEFAAEFMGVGRMLVSPSATFQ
Sbjct:  476 RINYLMEMGLSRREIALMIRRFPPLLGYSIKEVLKPKLNFLLNTIGKPVKDVVGYPRYFSYSLEKKIKPRFWVLKGKNIECSLEVMLGKNDEEFAAEFMGVGRMLVSPSATFQ 588          
BLAST of g.barbadense_cottongen_reftransV1_0095085 vs. ExPASy TrEMBL
Match: A0A0D2R7I6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G135000 PE=4 SV=1)

HSP 1 Score: 907.131 bits (2343), Expect = 0.000e+0
Identity = 470/476 (98.74%), Postives = 472/476 (99.16%), Query Frame = -1
Query: 1009 MSTKSFSIHWNLKSQFPNTCFLPFARRCSLNAFPLSFFHCPRIHSPKPYLPQPPLVQSNPYNQTPHDVTQARESISEYLQELGLSLEDXXXXXXXSPKYVQMLVDGVKELEEWNAWNDSNGEGDSLGFKEMIIYMAKEKGDNGKVAFLESVGLPLSSAMSVARYLSSESLPSIIRKVKYMKENIFSAGDDKGGLSGKNARRMMMHLSISSDEDVQQTLSFFEKIEARRGGLEMLGLVDATXXXXXXXXXXXXXXPVESHLEPMVEFLENIGVPRRSMGNVFLLFPPILFYKIQGIKSKFSTFEKVGAAYKDIGKMLLKYPWIFSTSIQENYEQILLFFEEEKIPKTSVDRAIRSWPHLLGCSTSKLKLMVDQFGELGIRNKKFGRVIAKSPQLLLKKPQEFLQVVLFFEGLGLDQETVGKLVSRCPEVFAANIDTTLKKKVELLAEFGISNDHLPRVIKKYPEVLVSDVNKTLLPR 2436
            MSTKSFSIHWNLKSQFPNTCFLPFARRCSLNAFPLSFFHCPRIHSPKPYLPQPPLVQSNPYNQTPHD+TQARESISEYLQELGLSLEDSISISSNSPKYVQMLVDGVKELEEWNAWNDSNGEGDSLGFKEMIIYMAKEKGDNGKVAFLESVGLPLSSAMSVARYLSSESLPSIIRKVKYMKENIFSAGDDKGGLSGKNARRMMMHLSISSDEDVQQTLSFFEKIEARRGGLE+LGLVDATFRFLLESFPRLLLLPVESHLEPMVEFLENIGVPRRSMGNVFLLFPPILFYKIQGIKSKF TFEKVGAAYKDIGKMLLKYPWI STSIQENYEQILLFFEEEKIPKTSVDRAIRSWPHLLGCSTSKLKLMVDQFGELGIRNKKFGRVIAKSPQLLLKKPQEFLQVVLFFE LGL QETVGKLVSRCPEVFAANIDTTLKKKVELLAEFGISNDHLPRVIKKYPEVLVSDVNKTLLPR
Sbjct:    1 MSTKSFSIHWNLKSQFPNTCFLPFARRCSLNAFPLSFFHCPRIHSPKPYLPQPPLVQSNPYNQTPHDLTQARESISEYLQELGLSLEDSISISSNSPKYVQMLVDGVKELEEWNAWNDSNGEGDSLGFKEMIIYMAKEKGDNGKVAFLESVGLPLSSAMSVARYLSSESLPSIIRKVKYMKENIFSAGDDKGGLSGKNARRMMMHLSISSDEDVQQTLSFFEKIEARRGGLEILGLVDATFRFLLESFPRLLLLPVESHLEPMVEFLENIGVPRRSMGNVFLLFPPILFYKIQGIKSKFLTFEKVGAAYKDIGKMLLKYPWILSTSIQENYEQILLFFEEEKIPKTSVDRAIRSWPHLLGCSTSKLKLMVDQFGELGIRNKKFGRVIAKSPQLLLKKPQEFLQVVLFFEELGLAQETVGKLVSRCPEVFAANIDTTLKKKVELLAEFGISNDHLPRVIKKYPEVLVSDVNKTLLPR 476          
BLAST of g.barbadense_cottongen_reftransV1_0095085 vs. ExPASy TrEMBL
Match: A0A0B0NNQ8_GOSAR (mTERF domain-containing 1, mitochondrial OS=Gossypium arboreum GN=F383_17946 PE=4 SV=1)

HSP 1 Score: 905.205 bits (2338), Expect = 0.000e+0
Identity = 467/476 (98.11%), Postives = 472/476 (99.16%), Query Frame = -1
Query: 1009 MSTKSFSIHWNLKSQFPNTCFLPFARRCSLNAFPLSFFHCPRIHSPKPYLPQPPLVQSNPYNQTPHDVTQARESISEYLQELGLSLEDXXXXXXXSPKYVQMLVDGVKELEEWNAWNDSNGEGDSLGFKEMIIYMAKEKGDNGKVAFLESVGLPLSSAMSVARYLSSESLPSIIRKVKYMKENIFSAGDDKGGLSGKNARRMMMHLSISSDEDVQQTLSFFEKIEARRGGLEMLGLVDATXXXXXXXXXXXXXXPVESHLEPMVEFLENIGVPRRSMGNVFLLFPPILFYKIQGIKSKFSTFEKVGAAYKDIGKMLLKYPWIFSTSIQENYEQILLFFEEEKIPKTSVDRAIRSWPHLLGCSTSKLKLMVDQFGELGIRNKKFGRVIAKSPQLLLKKPQEFLQVVLFFEGLGLDQETVGKLVSRCPEVFAANIDTTLKKKVELLAEFGISNDHLPRVIKKYPEVLVSDVNKTLLPR 2436
            MSTKSFSIHWNLKSQFPNTCFLPFARRCSLNAFPLSFFHCPRIHSPKPYLPQPPLVQSNP+NQTPHD+TQARESISEYLQELGLSLEDSISISSNSPKY+QMLVD VKELEEWNAWN+SNGEGDSLGFKEMII+MAKEKGDNGKVAFLESVGLPLSSAMSVARYLSSESLPSIIRKVKYMKENIFS GDDKGGLSGKNARRMMMHLSISSDEDVQQTLSFFEKIEARRGGLEMLGLVDATFRFLLESFPRLLLLPV SHLEPMVEFLENIGVPRRSMGNVFLLFPPILFYKIQGIKSKFSTFEKVGAAYKDIGKMLLKYPWIFSTSIQENYEQILLFFEEEKIPKTSVDRAIRSWPHLLGCSTSKLKLMVDQFGELGIRNKKFGRVIAKSPQLLLKKPQEFLQVVLFFEGLGLDQETVGKLVSRCPEVFAANIDTTLKKKVE LAEFGISNDHLPRVIKKYPEVLVSDVNKTLLPR
Sbjct:    1 MSTKSFSIHWNLKSQFPNTCFLPFARRCSLNAFPLSFFHCPRIHSPKPYLPQPPLVQSNPFNQTPHDLTQARESISEYLQELGLSLEDSISISSNSPKYMQMLVDAVKELEEWNAWNNSNGEGDSLGFKEMIIFMAKEKGDNGKVAFLESVGLPLSSAMSVARYLSSESLPSIIRKVKYMKENIFSVGDDKGGLSGKNARRMMMHLSISSDEDVQQTLSFFEKIEARRGGLEMLGLVDATFRFLLESFPRLLLLPVVSHLEPMVEFLENIGVPRRSMGNVFLLFPPILFYKIQGIKSKFSTFEKVGAAYKDIGKMLLKYPWIFSTSIQENYEQILLFFEEEKIPKTSVDRAIRSWPHLLGCSTSKLKLMVDQFGELGIRNKKFGRVIAKSPQLLLKKPQEFLQVVLFFEGLGLDQETVGKLVSRCPEVFAANIDTTLKKKVEFLAEFGISNDHLPRVIKKYPEVLVSDVNKTLLPR 476          

HSP 2 Score: 231.106 bits (588), Expect = 6.986e-62
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = -2
Query:  171 RINYLMEMGLSRRQIALMIHRFPPLLGYSIEEVLKPKLNFPLNTIGKPAKDVVGYPRYFSYSLEKKIKPRFWVLKGKNIECSLEVMLGKNDEEFAAEFMGVGRMLVSPSATFQ 509
            RINYLMEMGLSRRQIALMIHRFPPLLGYSIEEVLKPKLNF LNTIGKPAKDVVGYPRYFSYSLEKKIKPRFWVLKG+NIECSLEVMLGKNDEEFAAEFMGVGRMLVSPSATFQ
Sbjct:  476 RINYLMEMGLSRRQIALMIHRFPPLLGYSIEEVLKPKLNFLLNTIGKPAKDVVGYPRYFSYSLEKKIKPRFWVLKGRNIECSLEVMLGKNDEEFAAEFMGVGRMLVSPSATFQ 588          
BLAST of g.barbadense_cottongen_reftransV1_0095085 vs. ExPASy TrEMBL
Match: A0A0D2UE25_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G135000 PE=4 SV=1)

HSP 1 Score: 881.322 bits (2276), Expect = 0.000e+0
Identity = 457/463 (98.70%), Postives = 459/463 (99.14%), Query Frame = -1
Query: 1048 MSTKSFSIHWNLKSQFPNTCFLPFARRCSLNAFPLSFFHCPRIHSPKPYLPQPPLVQSNPYNQTPHDVTQARESISEYLQELGLSLEDXXXXXXXSPKYVQMLVDGVKELEEWNAWNDSNGEGDSLGFKEMIIYMAKEKGDNGKVAFLESVGLPLSSAMSVARYLSSESLPSIIRKVKYMKENIFSAGDDKGGLSGKNARRMMMHLSISSDEDVQQTLSFFEKIEARRGGLEMLGLVDATXXXXXXXXXXXXXXPVESHLEPMVEFLENIGVPRRSMGNVFLLFPPILFYKIQGIKSKFSTFEKVGAAYKDIGKMLLKYPWIFSTSIQENYEQILLFFEEEKIPKTSVDRAIRSWPHLLGCSTSKLKLMVDQFGELGIRNKKFGRVIAKSPQLLLKKPQEFLQVVLFFEGLGLDQETVGKLVSRCPEVFAANIDTTLKKKVELLAEFGISNDHLPRVIKKYPE 2436
            MSTKSFSIHWNLKSQFPNTCFLPFARRCSLNAFPLSFFHCPRIHSPKPYLPQPPLVQSNPYNQTPHD+TQARESISEYLQELGLSLEDSISISSNSPKYVQMLVDGVKELEEWNAWNDSNGEGDSLGFKEMIIYMAKEKGDNGKVAFLESVGLPLSSAMSVARYLSSESLPSIIRKVKYMKENIFSAGDDKGGLSGKNARRMMMHLSISSDEDVQQTLSFFEKIEARRGGLE+LGLVDATFRFLLESFPRLLLLPVESHLEPMVEFLENIGVPRRSMGNVFLLFPPILFYKIQGIKSKF TFEKVGAAYKDIGKMLLKYPWI STSIQENYEQILLFFEEEKIPKTSVDRAIRSWPHLLGCSTSKLKLMVDQFGELGIRNKKFGRVIAKSPQLLLKKPQEFLQVVLFFE LGL QETVGKLVSRCPEVFAANIDTTLKKKVELLAEFGISNDHLPRVIKKYPE
Sbjct:    1 MSTKSFSIHWNLKSQFPNTCFLPFARRCSLNAFPLSFFHCPRIHSPKPYLPQPPLVQSNPYNQTPHDLTQARESISEYLQELGLSLEDSISISSNSPKYVQMLVDGVKELEEWNAWNDSNGEGDSLGFKEMIIYMAKEKGDNGKVAFLESVGLPLSSAMSVARYLSSESLPSIIRKVKYMKENIFSAGDDKGGLSGKNARRMMMHLSISSDEDVQQTLSFFEKIEARRGGLEILGLVDATFRFLLESFPRLLLLPVESHLEPMVEFLENIGVPRRSMGNVFLLFPPILFYKIQGIKSKFLTFEKVGAAYKDIGKMLLKYPWILSTSIQENYEQILLFFEEEKIPKTSVDRAIRSWPHLLGCSTSKLKLMVDQFGELGIRNKKFGRVIAKSPQLLLKKPQEFLQVVLFFEELGLAQETVGKLVSRCPEVFAANIDTTLKKKVELLAEFGISNDHLPRVIKKYPE 463          
BLAST of g.barbadense_cottongen_reftransV1_0095085 vs. ExPASy TrEMBL
Match: A0A061G8T4_THECC (Mitochondrial transcription termination factor family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_027727 PE=4 SV=1)

HSP 1 Score: 738.413 bits (1905), Expect = 0.000e+0
Identity = 391/486 (80.45%), Postives = 421/486 (86.63%), Query Frame = -1
Query:  979 MSTKSFSIHWNLKSQFPNTCFLPFARRCSLNAFPLSFFHCPRIHSPKPYLPQPPLVQSNPYNQTPHDVTQARESISEYLQELGLSLEDXXXXXXXSPKYVQMLVDGVKELEEWNAWNDSNGEGDSLGFKEMIIYMAKEKGDNGKVAFLESVGLPLSSAMSVARYLSSESLPSIIRKVKYMKENIFSAGDDKGGLSGKNARRMMMHLSISSDEDVQQTLSFFEKIEARRGGLEMLGLVDATXXXXXXXXXXXXXXPVESHLEPMVEFLENIGVPRRSMGNVFLLFPPILFYKIQGIKSKFSTFEKVGAAYKDIGKMLLKYPWIFSTSIQENYEQILLFFEEEKIPKTSVDRAIRSWPHLLGCSTSKLKLMVDQFGELGIRNKKFGRVIAKSPQLLLKKPQEFLQVVLFFEGLGLDQETVGKLVSRCPEVFAANIDTTLKKKVELLAEFGISNDHLPRVIKKYPEVLVSDVNKTLLPR*YFYFSTLFY 2436
            MSTKSFS HWNLKS FPNTCFL F R+   NA P SFF  PRIH PK Y PQPPL  S P +QT H++TQA+ES+SEYLQ+LGLSLEDSISI+SNSPKY QMLVDGVKELEEWNAWN+SNGEGD LGFKEM+IYMAKEKGDNGKVAFLESVGL LSSAMSVARYLSSESLPS+I KVKYMKE IFS GDDK  LSGKNARRMMM+LSI SDEDV+QTLSFFEKIEARRGGL+MLG VDATFRFLLESFPR+LLLPVESHL P+VE LENIGVPR S+G VFLLFPP+LF  +QGIK+K S FEKVGAA KD+GKMLLKYPWI STSIQ NYE ILLFFEEEKIPK SVDRAIRSWPH+LGCS SKLKLMV+QFGEL +RNKK GRVIAKSPQLLL+KPQE LQ VLF EGLG D+ETVGKL  RCPE+FAANID TLKKK+E L E GISN HLP VIKKYPE+LVSDV+K L PR  FY   L Y
Sbjct:    1 MSTKSFSTHWNLKSLFPNTCFLHFHRKSFPNALPFSFFQYPRIHCPKTYFPQPPLALSYPSDQTSHNLTQAQESVSEYLQDLGLSLEDSISIASNSPKYTQMLVDGVKELEEWNAWNNSNGEGDHLGFKEMVIYMAKEKGDNGKVAFLESVGLTLSSAMSVARYLSSESLPSLIHKVKYMKEIIFSGGDDKW-LSGKNARRMMMYLSIPSDEDVEQTLSFFEKIEARRGGLDMLGSVDATFRFLLESFPRILLLPVESHLIPLVELLENIGVPRGSIGKVFLLFPPVLFCNVQGIKTKASAFEKVGAANKDVGKMLLKYPWILSTSIQNNYEHILLFFEEEKIPKASVDRAIRSWPHILGCSISKLKLMVEQFGELDVRNKKLGRVIAKSPQLLLRKPQELLQFVLFLEGLGFDRETVGKLGCRCPEIFAANIDKTLKKKIEFLVELGISNHHLPWVIKKYPELLVSDVDKALRPRYCFYSLQLHY 485          

HSP 2 Score: 187.963 bits (476), Expect = 5.285e-47
Identity = 88/110 (80.00%), Postives = 101/110 (91.82%), Query Frame = -2
Query:  180 RINYLMEMGLSRRQIALMIHRFPPLLGYSIEEVLKPKLNFPLNTIGKPAKDVVGYPRYFSYSLEKKIKPRFWVLKGKNIECSLEVMLGKNDEEFAAEFMGVGRMLVSPSA 509
            RI YLME+GLS+R+IALM+ RF PLLGYSIEEVL+PKL F L+T+ KP KDVV YPR+FSYSLEKKIKPRFWVLKG+N+ECSL+ MLGKNDEEFAAEFMGVGRML+SPS+
Sbjct:  500 RIQYLMEIGLSKREIALMVRRFSPLLGYSIEEVLRPKLKFLLDTMEKPVKDVVDYPRFFSYSLEKKIKPRFWVLKGRNMECSLKDMLGKNDEEFAAEFMGVGRMLISPSS 609          
BLAST of g.barbadense_cottongen_reftransV1_0095085 vs. ExPASy TrEMBL
Match: A0A061G9L6_THECC (Mitochondrial transcription termination factor family protein, putative isoform 2 OS=Theobroma cacao GN=TCM_027727 PE=4 SV=1)

HSP 1 Score: 734.561 bits (1895), Expect = 0.000e+0
Identity = 387/476 (81.30%), Postives = 417/476 (87.61%), Query Frame = -1
Query: 1009 MSTKSFSIHWNLKSQFPNTCFLPFARRCSLNAFPLSFFHCPRIHSPKPYLPQPPLVQSNPYNQTPHDVTQARESISEYLQELGLSLEDXXXXXXXSPKYVQMLVDGVKELEEWNAWNDSNGEGDSLGFKEMIIYMAKEKGDNGKVAFLESVGLPLSSAMSVARYLSSESLPSIIRKVKYMKENIFSAGDDKGGLSGKNARRMMMHLSISSDEDVQQTLSFFEKIEARRGGLEMLGLVDATXXXXXXXXXXXXXXPVESHLEPMVEFLENIGVPRRSMGNVFLLFPPILFYKIQGIKSKFSTFEKVGAAYKDIGKMLLKYPWIFSTSIQENYEQILLFFEEEKIPKTSVDRAIRSWPHLLGCSTSKLKLMVDQFGELGIRNKKFGRVIAKSPQLLLKKPQEFLQVVLFFEGLGLDQETVGKLVSRCPEVFAANIDTTLKKKVELLAEFGISNDHLPRVIKKYPEVLVSDVNKTLLPR 2436
            MSTKSFS HWNLKS FPNTCFL F R+   NA P SFF  PRIH PK Y PQPPL  S P +QT H++TQA+ES+SEYLQ+LGLSLEDSISI+SNSPKY QMLVDGVKELEEWNAWN+SNGEGD LGFKEM+IYMAKEKGDNGKVAFLESVGL LSSAMSVARYLSSESLPS+I KVKYMKE IFS GDDK  LSGKNARRMMM+LSI SDEDV+QTLSFFEKIEARRGGL+MLG VDATFRFLLESFPR+LLLPVESHL P+VE LENIGVPR S+G VFLLFPP+LF  +QGIK+K S FEKVGAA KD+GKMLLKYPWI STSIQ NYE ILLFFEEEKIPK SVDRAIRSWPH+LGCS SKLKLMV+QFGEL +RNKK GRVIAKSPQLLL+KPQE LQ VLF EGLG D+ETVGKL  RCPE+FAANID TLKKK+E L E GISN HLP VIKKYPE+LVSDV+K L PR
Sbjct:    1 MSTKSFSTHWNLKSLFPNTCFLHFHRKSFPNALPFSFFQYPRIHCPKTYFPQPPLALSYPSDQTSHNLTQAQESVSEYLQDLGLSLEDSISIASNSPKYTQMLVDGVKELEEWNAWNNSNGEGDHLGFKEMVIYMAKEKGDNGKVAFLESVGLTLSSAMSVARYLSSESLPSLIHKVKYMKEIIFSGGDDKW-LSGKNARRMMMYLSIPSDEDVEQTLSFFEKIEARRGGLDMLGSVDATFRFLLESFPRILLLPVESHLIPLVELLENIGVPRGSIGKVFLLFPPVLFCNVQGIKTKASAFEKVGAANKDVGKMLLKYPWILSTSIQNNYEHILLFFEEEKIPKASVDRAIRSWPHILGCSISKLKLMVEQFGELDVRNKKLGRVIAKSPQLLLRKPQELLQFVLFLEGLGFDRETVGKLGCRCPEIFAANIDKTLKKKIEFLVELGISNHHLPWVIKKYPELLVSDVDKALRPR 475          

HSP 2 Score: 187.963 bits (476), Expect = 3.728e-47
Identity = 88/110 (80.00%), Postives = 101/110 (91.82%), Query Frame = -2
Query:  180 RINYLMEMGLSRRQIALMIHRFPPLLGYSIEEVLKPKLNFPLNTIGKPAKDVVGYPRYFSYSLEKKIKPRFWVLKGKNIECSLEVMLGKNDEEFAAEFMGVGRMLVSPSA 509
            RI YLME+GLS+R+IALM+ RF PLLGYSIEEVL+PKL F L+T+ KP KDVV YPR+FSYSLEKKIKPRFWVLKG+N+ECSL+ MLGKNDEEFAAEFMGVGRML+SPS+
Sbjct:  475 RIQYLMEIGLSKREIALMVRRFSPLLGYSIEEVLRPKLKFLLDTMEKPVKDVVDYPRFFSYSLEKKIKPRFWVLKGRNMECSLKDMLGKNDEEFAAEFMGVGRMLISPSS 584          
BLAST of g.barbadense_cottongen_reftransV1_0095085 vs. ExPASy TrEMBL
Match: B9RHT4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1573480 PE=4 SV=1)

HSP 1 Score: 522.702 bits (1345), Expect = 1.781e-171
Identity = 281/475 (59.16%), Postives = 355/475 (74.74%), Query Frame = -1
Query: 1009 PNTCFLPFARRCSLNAFPLSFFHCPRIHSP------------KPYLPQPPLVQSNPYNQTPH---DVTQARESISEYLQELGLSLEDXXXXXXXSPKYVQMLVDGVKELEEWNAWNDSNGEGDSLGFKEMIIYMAKEKGDNGKVAFLESVGLPLSSAMSVARYLSSESLPSIIRKVKYMKENIFSAGDDKGGLSGKNARRMMMHLSISSDEDVQQTLSFFEKIEARRGGLEMLGLVDATXXXXXXXXXXXXXXPVESHLEPMVEFLENIGVPRRSMGNVFLLFPPILFYKIQGIKSKFSTFEKVGAAYKDIGKMLLKYPWIFSTSIQENYEQILLFFEEEKIPKTSVDRAIRSWPHLLGCSTSKLKLMVDQFGELGIRNKKFGRVIAKSPQLLLKKPQEFLQVVLFFEGLGLDQETVGKLVSRCPEVFAANIDTTLKKKVELLAEFGISNDHLPRVIKKYPEVLVSDVNKTLLPR 2388
            P T  LPF+   +L +FP   F  PR+  P            K + PQ      NP N +P+    +   RE+IS +L E G+++EDS SI+SN P+Y +ML+D VK+LEEWNAW     E D+LGFKE ++YMAKEKGDNGKVAFLES+G  LSSAM+VARYLS+ESLP++I KVKY+KE  FS  DDKG + G+NARRMMMHLSI  D+D+QQTLS FEKI+ARRGGL+ LG  DATFR+ +ESFPR LLL  ++HL+PMVEF E++GVP+  M ++FLLFPP++ Y I+ IK K    EKVGA  +D GKM+ KYPWI STSIQ+NY++IL F + EK+ K S+D+AIRSWPHLLGCSTSKLK++VD FG LG+++KK G VIAKSPQLLL+KP+EFLQVV F + LG DQE+VGK++ RCPE+FA + + TL+KKVE L   G+  DHL R IKKYPE+LVSD+ +TL PR
Sbjct:    9 PTTANLPFSSPKTL-SFPQ--FRHPRLPFPNKAYSFTTQFLRKHFFPQ----CQNPSNPSPYLAEHLDDTREAISHFLVEFGITIEDSTSIASNCPQYAKMLIDSVKDLEEWNAWKSDEMEFDALGFKEKVLYMAKEKGDNGKVAFLESLGFTLSSAMNVARYLSTESLPALILKVKYIKEMFFSGSDDKGHI-GRNARRMMMHLSIPIDDDLQQTLSLFEKIQARRGGLDRLGSSDATFRYFIESFPRTLLLQPDAHLKPMVEFFESLGVPKERMDSIFLLFPPVILYDIKVIKRKVLALEKVGAVDEDFGKMIFKYPWILSTSIQDNYKEILSFCDAEKVAKASIDKAIRSWPHLLGCSTSKLKVIVDHFGILGVKHKKVGHVIAKSPQLLLRKPEEFLQVVSFLKELGFDQESVGKILVRCPEIFATSAEKTLRKKVEFLTWMGVYGDHLCRTIKKYPELLVSDIERTLHPR 475          

HSP 2 Score: 136.732 bits (343), Expect = 3.060e-30
Identity = 61/99 (61.62%), Postives = 81/99 (81.82%), Query Frame = -2
Query:  213 RINYLMEMGLSRRQIALMIHRFPPLLGYSIEEVLKPKLNFPLNTIGKPAKDVVGYPRYFSYSLEKKIKPRFWVLKGKNIECSLEVMLGKNDEEFAAEFM 509
            R+ YLME+G+++ ++ LM+ RF PLLGYSIEEVL+PK  F +NT+GK  K+VV YPRYFSYSLEKKIKPR+W +  +N+ECSL+ ML KND++FA  F+
Sbjct:  475 RMKYLMEVGVTKEEVGLMVGRFSPLLGYSIEEVLRPKYEFLVNTMGKGVKEVVEYPRYFSYSLEKKIKPRYWAVMRRNVECSLKEMLDKNDDDFAHHFI 573          
BLAST of g.barbadense_cottongen_reftransV1_0095085 vs. ExPASy TrEMBL
Match: F6GYK9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0054g01030 PE=4 SV=1)

HSP 1 Score: 521.161 bits (1341), Expect = 1.648e-170
Identity = 291/465 (62.58%), Postives = 361/465 (77.63%), Query Frame = -1
Query: 1009 LPFARRCSLNAFPLSFFHCPRIHSPK-PYLPQPPLVQSNPYNQTPHDVT--------QARESISEYLQELGLSLEDXXXXXXXSPKYVQMLVDGVKELEEWNAWNDSNGEGDSLGFKEMIIYMAKEKGDNGKVAFLESVGLPLSSAMSVARYLSSESLPSIIRKVKYMKENIFSAGDDKGGLSGKNARRMMMHLSISSDEDVQQTLSFFEKIEARRGGLEMLGLVDATXXXXXXXXXXXXXXPVESHLEPMVEFLENIGVPRRSMGNVFLLFPPILFYKIQ-GIKSKFSTFEKVGAAYKDIGKMLLKYPWIFSTSIQENYEQILLFFEEEKIPKTSVDRAIRSWPHLLGCSTSKLKLMVDQFGELGIRNKKFGRVIAKSPQLLLKKPQEFLQVVLFFEGLGLDQETVGKLVSRCPEVFAANIDTTLKKKVELLAEFGISNDHLPRVIKKYPEVLVSDVNKTLLPR 2373
            LPF     L  FP  F    ++  P  P+LPQ     S  +NQ   D          QAR ++SE L+E G+S E+S+ I+ NSPKYV+MLVDGV++LEEWNAW     E +S  FKE +  +A+EKGD G++AFLES+GL LSSA+SVARYLSSESLP +I KV+++K+  FS G+D+G L GKNARRMMM+LSI  DED+QQTLSFFEKIEARRGGL++L   DA+F +L+ESFPRLLLL VESHL+PM++FLE+IGV R SM NV LL+PPI+FY I+  IK +   FEK+GAA KD+G+ML+KYPWI STSIQENYE+IL FF  EK+PK+SVD  I+SWPHLLGCSTSKLKL+V+QFGEL +RNKK G++IA SPQLLL+KP EFL+VV F E LG D+ETVG+++ RCPE+FAANI+ TLKKK+E LA  GI  DHLPRVI+KYPE+ VSD+N+TLLPR
Sbjct:   27 LPF----HLKPFPHKFPSITQLSFPHYPHLPQ----ASPSWNQQQEDEDEDEDEEEGQARAAVSEILRESGVSEEESVEIALNSPKYVKMLVDGVRDLEEWNAWKKGAEEAES--FKEKVYRLAREKGDYGRLAFLESIGLSLSSALSVARYLSSESLPGLIEKVRFVKQMFFSEGNDEGFL-GKNARRMMMYLSIPIDEDLQQTLSFFEKIEARRGGLDILCSKDASFGYLVESFPRLLLLSVESHLKPMMKFLEDIGVQRGSMRNVLLLYPPIIFYDIEKDIKPRLLAFEKIGAADKDLGRMLVKYPWIISTSIQENYEEILSFFYREKVPKSSVDSGIKSWPHLLGCSTSKLKLIVEQFGELDVRNKKLGQIIATSPQLLLQKPNEFLEVVSFLEELGFDRETVGRILGRCPEIFAANIEKTLKKKLEFLASIGIFKDHLPRVIRKYPELFVSDINRTLLPR 480          

HSP 2 Score: 154.451 bits (389), Expect = 5.609e-36
Identity = 74/106 (69.81%), Postives = 85/106 (80.19%), Query Frame = -2
Query:  192 RINYLMEMGLSRRQIALMIHRFPPLLGYSIEEVLKPKLNFPLNTIGKPAKDVVGYPRYFSYSLEKKIKPRFWVLKGKNIECSLEVMLGKNDEEFAAEFMGVGRMLV 509
            R  YL + G S+R IA MI RF PLLGYS+EEVL+PKL F + T+ KP K+VV YPRYFSYSLEKKIKPRFWVLK +N++CSL+ ML KNDEEFAAEFM VGR  V
Sbjct:  480 RTKYLRKTGFSKRDIAFMIRRFSPLLGYSVEEVLRPKLEFLVKTMEKPVKEVVDYPRYFSYSLEKKIKPRFWVLKVRNVDCSLKDMLAKNDEEFAAEFMDVGRTPV 585          
BLAST of g.barbadense_cottongen_reftransV1_0095085 vs. ExPASy TrEMBL
Match: A0A067JM18_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22571 PE=4 SV=1)

HSP 1 Score: 495.738 bits (1275), Expect = 1.155e-160
Identity = 283/489 (57.87%), Postives = 361/489 (73.82%), Query Frame = -1
Query: 1009 FPRMSTKSFSIHWNLKSQFPNTCFLPFARRCSLNAFPLSFFHCPR--IHSPKPYLPQPPLVQSNPYNQTPHDV-----TQARESISEYLQELGLSLEDXXXXXXXSPKYVQMLVDGVKELEEWNAWNDSNGEGDS---LGFKEMIIYMAKEKGDNGKVAFLESVGLPLSSAMSVARYLSSESLPSIIRKVKYMKENIFSAGDDKGGLSGKNARRMMMHLSISSDEDVQQTLSFFEKIEARRGGLEMLGLVDATXXXXXXXXXXXXXXPVESHLEPMVEFLENIGVPRRSMGNVFLLFPPILFYKIQGIKSKFSTFEKVGAAYKDIGKMLLKYPWIFSTSIQENYEQILLFFEEEKIPKTSVDRAIRSWPHLLGCSTSKLKLMVDQFGELGIRNKKFGRVIAKSPQLLLKKPQEFLQVVLFFEGLGLDQETVGKLVSRCPEVFAANIDTTLKKKVELLAEFGISNDHLPRVIKKYPEVLVSDVNKTLLPR 2445
            F  M+TK  S+  NL     NT +LP  +  SL  FP  F   P   +H    +L        NP NQ+P           RE+IS++LQE G+S EDS SI+SN PKY +ML D VK+LEE NAW  +  +G     LGF+E ++YMAKEKGDNGKVAFLES+GL LSSAM+VARY+SSESL  +I KVKYMK  +F +G D  GL GKNARRMMMHLSI  DED+QQTLS FEKIEARRGGL MLG  DA+F +L+ESFP +L+LP++SHL+P+VEFLE++GVP+  +G++FLLFPPI+   I+ IK K    EK+GA  +D GK+L KYPWI ST IQ+NY++I+ F   EK+ K S D+AIRSWPHLLGCSTSKLK+M++QF  LG+++KK G+VIAKSPQLLL+KP+ F++VV F + LG D+E+VGK++ RCPE+F  +I+ T+++KVE L   G+S +HLPR+IKKYPEVLVSDVN+TLLPR
Sbjct:    5 FSTMTTKFLSVPTNLLFSSANTRYLP--QFHSLLFFPHKF---PSFLLHQRTQFLINRFPKCQNPANQSPSTARDLLSDDTREAISQFLQEFGISTEDSSSIASNCPKYAKMLFDSVKDLEELNAWKSTIADGREFGVLGFQEKLVYMAKEKGDNGKVAFLESLGLSLSSAMNVARYVSSESLLGLIHKVKYMK-GVFFSGSDYKGLIGKNARRMMMHLSIPVDEDLQQTLSLFEKIEARRGGLNMLGSFDASFHYLVESFPHILVLPLDSHLKPLVEFLESVGVPKEHIGSIFLLFPPIILCDIKSIKRKVLVLEKLGAVGEDFGKILQKYPWILSTGIQDNYKEIISFCNMEKVAKKSFDKAIRSWPHLLGCSTSKLKVMLEQFEALGVKDKKLGQVIAKSPQLLLRKPEAFIRVVSFLKDLGFDEESVGKILVRCPEIFGLSIEKTVRRKVEFLISIGVSEEHLPRIIKKYPEVLVSDVNRTLLPR 487          

HSP 2 Score: 159.458 bits (402), Expect = 1.383e-37
Identity = 75/113 (66.37%), Postives = 90/113 (79.65%), Query Frame = -2
Query:  171 RINYLMEMGLSRRQIALMIHRFPPLLGYSIEEVLKPKLNFPLNTIGKPAKDVVGYPRYFSYSLEKKIKPRFWVLKGKNIECSLEVMLGKNDEEFAAEFMGVGRMLVSPSATFQ 509
            R+ YLME+GLSR+ IA M+ RF PLLGYSI +VL+PK  F +NT+ K  +D+V YPRYFSYSLEKKI+PRFWVLKG+NIECSL+ ML KNDEEFAA+FM  GRM    S + Q
Sbjct:  487 RMKYLMEVGLSRKDIAFMVRRFSPLLGYSINKVLRPKYEFLVNTMEKTVEDIVDYPRYFSYSLEKKIRPRFWVLKGRNIECSLQDMLDKNDEEFAAKFMDDGRMHAIQSPSHQ 599          
BLAST of g.barbadense_cottongen_reftransV1_0095085 vs. ExPASy TrEMBL
Match: B9HG78_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s15240g PE=4 SV=2)

HSP 1 Score: 491.5 bits (1264), Expect = 2.865e-159
Identity = 296/500 (59.20%), Postives = 365/500 (73.00%), Query Frame = -1
Query: 1009 MSTKSFSIHWNLKSQFPNTCFLPFARRCSLNAFPLSFFHCPRIHSPKPY----LPQ---------PPLVQSNPY--------NQTPHDVTQARESISEYLQELGLSLEDXXXXXXXSPKYVQMLVDGVKELEEWNAWNDSNGEGD---SLGFKEMIIYMAKEKGDNGKVAFLESVGLPLSSAMSVARYLSSESLPSIIRKVKYMKENIFSAGDDKGGLSGKNARRMMMHLSISSDEDVQQTLSFFEKIEARRGGLEMLGLVDATXXXXXXXXXXXXXXPVESHLEPMVEFLENIGVPRRSMGNVFLLFPPILFYKIQGIKSKFSTFEKVGAAYKDIGKMLLKYPWIFSTSIQENYEQILLFFEEEKIPKTSVDRAIRSWPHLLGCSTSKLKLMVDQFGELGIRNKKFGRVIAKSPQLLLKKPQEFLQVVLFFEGLGLDQETVGKLVSRCPEVFAANIDTTLKKKVELLAEFGISNDHLPRVIKKYPEVLVSDVNKTLLPR 2436
            M+TKS SI  +           PF    S  A PL   H P+I  P  +    LPQ         PP  Q+           +Q     T+ +E+IS++LQE G+S  +S SI+ NSPKY +ML D VK+LEEW +W  S G+G+   +LGFKE + YMAKEKGDNGKVAFLES+GL LSS+M+VARYL  ESLP+++ KVKYMKE +FS  DDK  L GK AR MMM+LSI  DED+QQTLS FEK+EARRGGL+MLG  + TFR L+ESFPR+LLLP++ HL+PMVEFLE+IGVP+  M  +FLLFPP++   I GI  K    +KV A  KD GKMLLKYPWI ST+IQ+NY++I+ FF  EK+ K+SVD AIRSWPH+LGCSTSKL++MV+Q  ELGIRNKK G+VI+KSPQLLL+KPQEFLQVVLF E LG D+ETVG++ SRCPE+FAA+I+ TLKKK+E L   G+S DHLPRVIKKYPE+LVSDVN+T+LPR
Sbjct:    1 MTTKSLSIPLDF----------PFP---SPKAHPLPTLH-PKIQFPCKFPLFSLPQRIQFLRNQCPPKCQNPNDNNNPVPYTSQQEAHFTETQEAISQFLQEFGISAAESNSIALNSPKYAKMLFDSVKDLEEWTSWK-SGGDGNEFATLGFKEKVAYMAKEKGDNGKVAFLESLGLSLSSSMNVARYLHGESLPNLVHKVKYMKEILFSDSDDKR-LVGKYARCMMMNLSIPIDEDLQQTLSLFEKVEARRGGLDMLGSSEVTFRCLVESFPRILLLPLDLHLKPMVEFLESIGVPKEHMREIFLLFPPVIICDITGINRKVQALKKVWAFDKDFGKMLLKYPWILSTAIQKNYKEIVSFFHMEKVDKSSVDTAIRSWPHILGCSTSKLEVMVEQLAELGIRNKKLGQVISKSPQLLLRKPQEFLQVVLFLEDLGFDRETVGQVASRCPEIFAASIEKTLKKKIEFLDRIGVSKDHLPRVIKKYPELLVSDVNRTILPR 484          

HSP 2 Score: 156.762 bits (395), Expect = 1.017e-36
Identity = 71/100 (71.00%), Postives = 86/100 (86.00%), Query Frame = -2
Query:  210 RINYLMEMGLSRRQIALMIHRFPPLLGYSIEEVLKPKLNFPLNTIGKPAKDVVGYPRYFSYSLEKKIKPRFWVLKGKNIECSLEVMLGKNDEEFAAEFMG 509
            R+ YL ++GLS++ IA M+ RF PLLGYSI+EVL+PK  F +NT+ KP +D+VGYPRYFSYSLEKKI PRFWVLKG+NIECSL+ ML KNDEEFAA+FMG
Sbjct:  484 RMKYLKDVGLSKKDIAFMVRRFSPLLGYSIDEVLRPKYEFLVNTMKKPVEDIVGYPRYFSYSLEKKIMPRFWVLKGRNIECSLKDMLAKNDEEFAADFMG 583          
The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0095085 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of g.barbadense_cottongen_reftransV1_0095085 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2V9Y6_GOSRA2.247e-5998.74Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2R7I6_GOSRA0.000e+098.74Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0NNQ8_GOSAR6.986e-6298.11mTERF domain-containing 1, mitochondrial OS=Gossyp... [more]
A0A0D2UE25_GOSRA0.000e+098.70Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061G8T4_THECC5.285e-4780.45Mitochondrial transcription termination factor fam... [more]
A0A061G9L6_THECC3.728e-4781.30Mitochondrial transcription termination factor fam... [more]
B9RHT4_RICCO1.781e-17159.16Putative uncharacterized protein OS=Ricinus commun... [more]
F6GYK9_VITVI1.648e-17062.58Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A067JM18_JATCU1.155e-16057.87Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9HG78_POPTR2.865e-15959.20Uncharacterized protein OS=Populus trichocarpa GN=... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 349..379
e-value: 7.8
score: 15.5
coord: 313..344
e-value: 0.45
score: 19.6
coord: 384..414
e-value: 2.6
score: 17.0
coord: 278..308
e-value: 400.0
score: 7.0
coord: 419..450
e-value: 1.6E-4
score: 31.0
coord: 242..273
e-value: 0.0021
score: 27.3
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 265..475
e-value: 1.7E-55
score: 188.1
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 42..476
NoneNo IPR availablePANTHERPTHR13068:SF3MTERF DOMAIN-CONTAINING PROTEIN 1, MITOCHONDRIALcoord: 42..476

Sequences
The following sequences are available for this feature:

contig sequence

>g.barbadense_cottongen_reftransV1_0095085 ID=g.barbadense_cottongen_reftransV1_0095085; Name=g.barbadense_cottongen_reftransV1_0095085; organism=Gossypium barbadense; type=contig; length=2724bp
AGCTCATTCAATTCATTGGTCTACTTACGTTCATGATGTTAACATGCGAT
GGCCAAATTACTTCAACCACAACTCTAGCCAATCACAAATTGTGATGTGT
CAAAGAGATTGCCTATAAATAAAGCATTTACAAAGATTGCCTATTATCAC
TTTAATGTTACAACAATTCATTGAAAAGTGGCGGATGGAGAAACAAGCAT
TCTTCCAACACCCATAAACTCAGCAGCAAACTCTTCATCATTTTTCCCTA
ACATTACTTCTAAGCTACATTCAATATTCTTTCCCTTAAGGACCCAGAAC
CTGGGTTTTATTTTCTTTTCCAATGAATAACTAAAGTACCTAGGGTACCC
CACCACATCCTTCGCAGGCTTTCCAATGGTGTTTAAAGGGAAATTGAGTT
TCGGTTTTAATACCTCCTCAATGCTGTATCCTAGTAATGGAGGAAACCTA
TGGATCATCAAAGCAATTTGCCTCCTAGACAGCCCCATCTCCATCAAATA
ATTGATCCTGTTCACATAATCGGCAGATCGAGTTACAACAACACTGATTT
TCTCATGACTGCATGATCTGTAACTTAATGAACATAGTTCTCATCATAAC
AATGAAGAAAAAAACCGAATGCATGATCCCCATTGTTTATATTTCCAACT
TAAATTATGTTATCCAAGTAAAACCATTCCAAACTCAAAAACAAAGCATT
CAAGATAGTTCAACAGACTGAACCTCAAGATAGAATGGCATTGACGTTGA
CATCAAACTTTTTTGTGTGTGATCTTGTCAGGAAAGAAAGAGTTTTAATA
CCTTTTTCTTTTGGTCAATACTTTCAATACCAGTTTTACCTACAATGCAT
TAGTGGAACTAAAATTTTCATTTTCATTTTTTTTTTCTTTTTTTCTGTTC
TTTTGACAATAAGTTTTTTCCCATGAGATGCCTGGTTGGTCTTTGGGTAT
TTTCCCACCACACAACACCTCAACTAATATAGAACAGTGTACTGAAATAA
AAGTATTACCGAGGAAGTAAAGTTTTGTTCACATCAGAAACAAGAACCTC
TGGATACTTTTTGATGACGCGAGGAAGGTGGTCATTGGAAATACCAAATT
CTGCAAGAAGCTCAACCTTTTTCTTCAAAGTTGTATCGATGTTGGCAGCA
AAGACTTCTGGACAGCGAGAAACTAACTTCCCCACAGTTTCCTGATCAAG
ACCAAGTCCTTCAAAAAATAGAACCACCTGGAGAAATTCTTGAGGTTTCT
TTAATAGCAGCTGGGGACTTTTGGCAATAACCCGGCCAAATTTCTTGTTT
CTAATACCCAATTCACCAAATTGATCCACCATTAACTTTAGCTTGCTTGT
AGAACAACCCAATAAATGAGGCCAGCTTCTAATTGCTCGGTCAACACTTG
TTTTCGGTATCTTTTCTTCCTCAAAAAACAAAAGGATCTGCTCATAATTT
TCTTGAATACTTGTTGAAAATATCCATGGATATTTTAGCAACATTTTCCC
AATATCTTTATATGCTGCACCAACCTTCTCGAAAGTTGAAAATTTTGATT
TAATGCCCTGAATCTTGTAAAACAAGATGGGAGGAAACAACAAAAATACA
TTTCCCATAGATCTCCTTGGAACTCCGATATTTTCAAGAAATTCAACCAT
AGGTTCCAAATGGGACTCCACTGGTAACAATAAAAGACGTGGAAATGATT
CCAACAAAAATCTAAAAGTTGCATCTACCAAACCCAACATCTCTAAACCT
CCACGCCTTGCTTCAATCTTCTCAAAGAAGGATAAGGTTTGTTGCACATC
TTCATCAGAAGAAATTGACAAGTGCATCATCATTCGGCGAGCATTTTTCC
CACTAAGCCCTCCTTTATCATCACCGGCAGAAAATATATTTTCCTTCATA
TACTTAACCTTACGAATAATACTGGGAAGTGATTCTGAGGACAAATAACG
AGCAACGCTCATGGCAGAAGAGAGAGGCAAACCCACACTCTCCAAAAAGG
CAACTTTTCCATTATCACCCTTCTCCTTCGCCATATAAATGATCATTTCC
TTAAACCCCAAACTATCCCCTTCACCATTACTATCATTCCAAGCATTCCA
TTCCTCCAGTTCCTTGACACCATCCACCAGCATTTGCACGTATTTCGGGG
AATTAGAAGATATAGAAATGGAATCCTCCAAAGAAAGCCCCAGTTCTTGG
AGGTACTCAGAAATGGATTCTCGGGCTTGTGTTACATCATGTGGAGTCTG
GTTATAGGGATTGGATTGGACCAAGGGAGGTTGAGGAAGGTATGGCTTCG
GAGAATGGATTCTTGGGCAGTGAAAGAATGACAAGGGGAAAGCATTCAAA
GAGCACCGGCGAGCAAAAGGGAGAAAACAGGTGTTTGGAAACTGGGATTT
TAAATTCCAGTGAATTGAGAAGGATTTGGTGGACATTCGGGGAAACTTTC
TTTAACACCCCCAGAGAAACCCTAGCATATGGCAAAAATTCACACTGAAC
AAACAAAGCTGAAACGTATCCAATATTTTACATTAAAAAGAAGACCACAT
GAAAATCAAGTAATCAACAGTCACAAAAATAAATAAATAAATAATAAAGG
TTTCCCAGATTTGCTATAAACAAGTTGCTATTTGCCTAAAATATTTATTA
GTGTTCCCAGAAGCACAACTTAAGACCTACAACTGATAAGGCTATATTTT
ATTTTTATTATTCTTTGAATAAAA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding