g.barbadense_cottongen_reftransV1_0092931, g.barbadense_cottongen_reftransV1_0092931 (contig) Gossypium barbadense
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: TIC32_ARATH (Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 6.859e-41 Identity = 94/183 (51.37%), Postives = 126/183 (68.85%), Query Frame = -1 Query: 1345 YLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRY 1893 + GS G SGF S+STAEEVT D +T I+TGA+SGIG ETARVL+ RG +V+ RN + + K IV + P +++ VM LDLSS+ SVR F SE +S LP+N+LINNAG A +S+D IE+ FATN+LGHFLLTKLLL+TM T++++ GRIVN+SS H + + +R+ Sbjct: 2 WFFGSKGASGFSSRSTAEEVTHGV-DGTGLTAIVTGASSGIGVETARVLSLRGVHVVMAVRNTDSGAKVKEDIVKQVPGAKLDVMELDLSSMQSVRKFASEYKSTGLPLNLLINNAGIMACPFMLSKDNIELQFATNHLGHFLLTKLLLDTMKSTSRESKREGRIVNLSSEAHRFSYPEGVRF 183 HSP 2 Score: 56.9954 bits (136), Expect = 2.567e-7 Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = -2 Query: 1020 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTR 1169 S Y + RAY SKL NVLH EL ++LK+ N+T N +HPG + T L R Sbjct: 190 SSYSSMRAYGQSKLCNVLHANELTKQLKEDGVNITANSLHPGAIMTNLGR 239
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: TIC32_PEA (Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 3.012e-38 Identity = 91/177 (51.41%), Postives = 122/177 (68.93%), Query Frame = -1 Query: 1345 GVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRY 1875 GVSGF STAE+VT D +T I+TGA+SGIGAET RVLA RGA +++ RN+ AA++ K I+ + P +++ + LDLSSL SV+ F SE S P+NILINNAG A +S+D IE+ FATN++GHFLLT LLL+TM KT +++ GRIVNV+S H + + IR+ Sbjct: 9 GVSGFSGSSTAEQVTHGI-DATGLTAIVTGASSGIGAETTRVLALRGAHVIMGVRNMVAAKDVKDTILKDIPSAKVDAIELDLSSLDSVKKFASEFNSSGRPLNILINNAGIMACPFKLSKDNIELQFATNHIGHFLLTNLLLDTMKKTTRESKKEGRIVNVASEAHRFAYPEGIRF 184 HSP 2 Score: 55.8398 bits (133), Expect = 6.618e-7 Identity = 29/62 (46.77%), Postives = 36/62 (58.06%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTRERE---GLITGI 1169 S Y+ RAY SKLANVLH +L + LK+ N+T N +HPG + T L R GLI I Sbjct: 191 SSYNNWRAYGQSKLANVLHANQLTKHLKEDGVNITANSLHPGTIVTNLFRHNSAVNGLINVI 252
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_CHICK (WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 1.416e-25 Identity = 67/163 (41.10%), Postives = 100/163 (61.35%), Query Frame = -1 Query: 1375 FGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1863 + STA E+ + DL +IITGA SGIG ETA+ A GA ++L RN+ +A RI+ E+ ++++ M LDL+SL SV+NF +S N+P++IL+ NA F ++EDG+E TF N+LGHF L +LL + + +++ P R+V VSS H Sbjct: 107 YDGNSTAMEILQG-RDLSGKVIIITGANSGIGFETAKSFALHGAYVILACRNMSRGNDAVQRILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGSSWCLTEDGLESTFQVNHLGHFYLVQLLEDILRRSS-----PARVVVVSSESH 263
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_HUMAN (WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 9.693e-24 Identity = 62/163 (38.04%), Postives = 102/163 (62.58%), Query Frame = -1 Query: 1375 FGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1863 + +TA E+ + D V++TGA SGIG ETA+ A GA ++L RN+ A EA +RI+ E+ ++++ M LDL+ L SV++F ++ N+P+++L+ NA FA ++++DG+E TF N+LGHF L +LL + + ++A P R++ VSS H Sbjct: 107 YDGSTTAMEILQG-RDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAMTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVNHLGHFYLVQLLQDVLCRSA-----PARVIVVSSESH 263
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_MOUSE (WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 4.717e-23 Identity = 62/163 (38.04%), Postives = 101/163 (61.96%), Query Frame = -1 Query: 1375 FGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1863 + +TA E+ + D V++TGA SGIG ETA+ A GA ++L RNL A EA +RI+ E+ ++++ M LDL+ L SV++F ++ N+ +++L+ NAG FA +++DG+E TF N+LGHF L +LL + + +++ P R++ VSS H Sbjct: 107 YDGSTTAMEILQG-RDFTGKVVLVTGANSGIGFETAKSFALHGAHVILACRNLSRASEAVSRILEEWHKAKVEAMTLDLAVLRSVQHFAEAFKAKNVSLHVLVCNAGTFALPWGLTKDGLETTFQVNHLGHFYLVQLLQDVLCRSS-----PARVIVVSSESH 263
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_PONAB (WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 5.854e-23 Identity = 58/148 (39.19%), Postives = 95/148 (64.19%), Query Frame = -1 Query: 1375 DLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1818 D V++TGA SGIG ETA+ A GA ++L RN+ A EA +RI+ E+ ++++ + LDL+ L SV++F ++ N+P+++L+ NA FA ++++DG+E TF N+LGHF L +LL + + ++A P R++ VSS H Sbjct: 121 DFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAVTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVNHLGHFYLVQLLQDVLCRSA-----PARVIVVSSESH 263
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH13_HUMAN (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 9.821e-22 Identity = 66/153 (43.14%), Postives = 90/153 (58.82%), Query Frame = -1 Query: 1375 CPDLRSI---TVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1824 CP +I TVI+TGA +GIG +TA LA+RG ++L R+++ E A I E + LDL+SL S+R F +++ V+ILINNAG H +EDG EM F N+LGHFLLT LLL+ + +A P RI+N+SS H Sbjct: 30 CPSKATIPGKTVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFEMQFGVNHLGHFLLTNLLLDKLKASA-----PSRIINLSSLAH 177
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_DANRE (WW domain-containing oxidoreductase OS=Danio rerio GN=wwox PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.205e-21 Identity = 61/148 (41.22%), Postives = 89/148 (60.14%), Query Frame = -1 Query: 1375 DLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1818 DL +I+TGA SGIG ETAR A GA ++L RN A +A + I+ E+ ++ + V+ LDL+SL SVR F ++ LP+++L+ NA + ++EDG E TF +LGHFLL +LL + + +A P R+V VSS H Sbjct: 118 DLSDKVIIVTGANSGIGFETARSFALHGAHVILACRNQSRASKAASLIMGEWSKARVEVLPLDLASLRSVRQFAELFKATKLPLHVLVCNAAVCSQPWRLTEDGFESTFQICHLGHFLLVQLLQDVLRLSA-----PARVVVVSSESH 260
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH13_MOUSE (Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 3.026e-21 Identity = 66/153 (43.14%), Postives = 88/153 (57.52%), Query Frame = -1 Query: 1375 CPDLRSI---TVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1824 CP +I TVI+TGA +GIG +TA LAKRG ++L R+++ E A I E + LDL+SL S+R F ++ V+IL+NNA H +EDG EM F NYLGHFLLT LLL+ + +A P RI+N+SS H Sbjct: 30 CPSKATIPGKTVIVTGANTGIGKQTALELAKRGGNVILACRDMEKCEVAAKDIRGETLNPRVRAERLDLASLKSIREFARKVIKEEERVDILVNNAAVMRCPHWTTEDGFEMQFGVNYLGHFLLTNLLLDKLKASA-----PSRIINLSSLAH 177
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH12_MOUSE (Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.056e-20 Identity = 61/142 (42.96%), Postives = 87/142 (61.27%), Query Frame = -1 Query: 1375 VIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1800 V+ITGA +GIG ETAR LA+RGAR+ + R++ E A + I ++ S+++V LDLS S+R F + ++ILINNAG ++ + DG E F N+LGHFLLT LLL + ++A P R+VN+SS H Sbjct: 42 VVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETHFGVNHLGHFLLTYLLLERLKESA-----PARVVNLSSIAH 178
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2R3N0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=4 SV=1) HSP 1 Score: 369.392 bits (947), Expect = 1.848e-119 Identity = 197/198 (99.49%), Postives = 197/198 (99.49%), Query Frame = -1 Query: 1318 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSKR 1911 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSKR Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSKR 198
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2RYD4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1) HSP 1 Score: 369.777 bits (948), Expect = 3.263e-119 Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2R3M8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1) HSP 1 Score: 369.392 bits (947), Expect = 2.140e-118 Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197 HSP 2 Score: 119.783 bits (299), Expect = 4.522e-30 Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT + Sbjct: 198 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITDL 256 HSP 3 Score: 41.2022 bits (95), Expect = 4.522e-30 Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = -1 Query: 853 DLVFFLASKLLKTIPQVN 906 DLVFFLASKLLKTIPQVN Sbjct: 255 DLVFFLASKLLKTIPQVN 272
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2MXG9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1) HSP 1 Score: 368.237 bits (944), Expect = 3.934e-118 Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197 HSP 2 Score: 128.257 bits (321), Expect = 2.051e-29 Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = -2 Query: 987 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGIYI 1169 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGIYI Sbjct: 198 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGIYI 258
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2QWS7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1) HSP 1 Score: 367.851 bits (943), Expect = 4.873e-118 Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2MXG6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1) HSP 1 Score: 368.622 bits (945), Expect = 1.131e-117 Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197 HSP 2 Score: 121.324 bits (303), Expect = 1.163e-26 Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = -2 Query: 996 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITG 1169 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITG Sbjct: 198 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITG 255 HSP 3 Score: 106.686 bits (265), Expect = 1.228e-21 Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = -2 Query: 621 TGSCHDLLRRHASKTAKYKWEILCRLQRSMDIQTGVEFQRSCKALGCL 764 TGSCHDLLRRHASKTAKYKWEILCRLQRSMDIQTGVEFQRSCKALGCL Sbjct: 254 TGSCHDLLRRHASKTAKYKWEILCRLQRSMDIQTGVEFQRSCKALGCL 301
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2PB19_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1) HSP 1 Score: 368.622 bits (945), Expect = 3.780e-117 Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197 HSP 2 Score: 154.836 bits (390), Expect = 9.092e-69 Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = -3 Query: 551 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDYHHM 763 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDYHHM Sbjct: 270 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDYHHM 340 HSP 3 Score: 119.783 bits (299), Expect = 9.092e-69 Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT + Sbjct: 198 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITDL 256 HSP 4 Score: 37.3502 bits (85), Expect = 9.092e-69 Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DLVFFLASKLLKTIPQ Sbjct: 255 DLVFFLASKLLKTIPQ 270
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0B0P8L4_GOSAR (Short-chain dehydrogenase TIC 32, chloroplastic-like protein OS=Gossypium arboreum GN=F383_02458 PE=3 SV=1) HSP 1 Score: 367.081 bits (941), Expect = 1.632e-116 Identity = 195/197 (98.98%), Postives = 195/197 (98.98%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLETLKYLIGSTGVSGFGSKSTAEE TETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK Sbjct: 1 MLETLKYLIGSTGVSGFGSKSTAEEATETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197 HSP 2 Score: 151.754 bits (382), Expect = 7.839e-68 Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = -3 Query: 551 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDYHHM 763 QAAATTCYVA HPRLLNISGKYFADCNEAWTSKLGSNSNE+AKLWAASEIMVSKHAKAVFDPLSAFDYHHM Sbjct: 270 QAAATTCYVAAHPRLLNISGKYFADCNEAWTSKLGSNSNESAKLWAASEIMVSKHAKAVFDPLSAFDYHHM 340 HSP 3 Score: 119.783 bits (299), Expect = 7.839e-68 Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT + Sbjct: 198 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITDL 256 HSP 4 Score: 37.3502 bits (85), Expect = 7.839e-68 Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DLVFFLASKLLKTIPQ Sbjct: 255 DLVFFLASKLLKTIPQ 270
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A061G5K7_THECC (NAD(P)-binding Rossmann-fold superfamily protein OS=Theobroma cacao GN=TCM_016543 PE=3 SV=1) HSP 1 Score: 332.798 bits (852), Expect = 2.348e-103 Identity = 172/197 (87.31%), Postives = 189/197 (95.94%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLET+KYL GSTG SGFGSKSTAE+VTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFP+++I+VMALDLSSL+SVR FVSE +SL+LP+N+LINNAGKFAHEH ISEDGIEMTFATNYLGHFLLTKLLLN M+KTAK++GV GRIVNVSSSIHGWFSGD+IR++GQISRSK Sbjct: 1 MLETVKYLFGSTGASGFGSKSTAEQVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPDAKIVVMALDLSSLSSVRKFVSEFQSLSLPLNVLINNAGKFAHEHGISEDGIEMTFATNYLGHFLLTKLLLNKMIKTAKESGVQGRIVNVSSSIHGWFSGDVIRHLGQISRSK 197 HSP 2 Score: 127.872 bits (320), Expect = 6.475e-60 Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = -3 Query: 551 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDYHHM 763 QAAATTCYVATHPRL+N+SGKYFADCNEA SKLGSNSNEAA+LW ASEIMVS KAVFDP + FDY HM Sbjct: 270 QAAATTCYVATHPRLVNVSGKYFADCNEARPSKLGSNSNEAARLWTASEIMVSIDPKAVFDPRNGFDYDHM 340 HSP 3 Score: 117.087 bits (292), Expect = 6.475e-60 Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169 S YDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT + Sbjct: 198 SPYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITDL 256 HSP 4 Score: 36.965 bits (84), Expect = 6.475e-60 Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DLVFFLASKLLKTIPQ Sbjct: 255 DLVFFLASKLLKTIPQ 270
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2SCP5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G020400 PE=3 SV=1) HSP 1 Score: 327.791 bits (839), Expect = 1.101e-101 Identity = 170/197 (86.29%), Postives = 184/197 (93.40%), Query Frame = -1 Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911 MLET+KYLIGS G SGFGSKSTAEEVTETCPDLR IT IITGATSGIGAETARVLAKRGARLV+PARNLKAA EAKARIVSEFP SEI++MALDLSSL+SVR FV + ESL+LP+N+L+NNAG+FAH HAISEDGIEMTFATNYLGHFLLTKLLLN MM+T KQTGV GRIVNVSSSI+GWFSGDMIRY+GQISRSK Sbjct: 1 MLETVKYLIGSRGASGFGSKSTAEEVTETCPDLRFITAIITGATSGIGAETARVLAKRGARLVIPARNLKAAAEAKARIVSEFPNSEIVIMALDLSSLSSVRKFVLDFESLDLPLNLLVNNAGRFAHHHAISEDGIEMTFATNYLGHFLLTKLLLNKMMETTKQTGVQGRIVNVSSSINGWFSGDMIRYLGQISRSK 197 HSP 2 Score: 113.62 bits (283), Expect = 8.363e-50 Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = -2 Query: 993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169 SQYDATRAYALSKLANVLHTKELAQRLK++ ANVTVNCVHPGIVRTRLTREREG IT + Sbjct: 198 SQYDATRAYALSKLANVLHTKELAQRLKEMGANVTVNCVHPGIVRTRLTREREGFITDL 256 HSP 3 Score: 99.3673 bits (246), Expect = 8.363e-50 Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = -3 Query: 602 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSK 763 QAA+TTCYVAT+PRL N+SGKYFADCNE WTSKLGS+S EA+KLWAASEIMVS+ Sbjct: 270 QAASTTCYVATYPRLENVSGKYFADCNETWTSKLGSDSIEASKLWAASEIMVSE 323 HSP 4 Score: 35.039 bits (79), Expect = 8.363e-50 Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = -1 Query: 859 DLVFFLASKLLKTIPQ 906 DLVFFLASKLLKT PQ Sbjct: 255 DLVFFLASKLLKTTPQ 270 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 25
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BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092931 ID=g.barbadense_cottongen_reftransV1_0092931; Name=g.barbadense_cottongen_reftransV1_0092931; organism=Gossypium barbadense; type=contig; length=2262bpback to top |