g.barbadense_cottongen_reftransV1_0092931, g.barbadense_cottongen_reftransV1_0092931 (contig) Gossypium barbadense

Overview


Name	g.barbadense_cottongen_reftransV1_0092931
Unique Name	g.barbadense_cottongen_reftransV1_0092931
Type	contig
Organism	Gossypium barbadense (Sea Island cotton)
Sequence length	2262

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Dt08	chromosome	g.barbadense_cottongen_reftransV1_0092931:1..2262 . Dt08:37952556..37955215 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium barbadense CottonGen RefTrans V1	2016-11-01
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot	2016-11-01
InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1	2016-11-02
Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL	2016-11-02

Homology

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BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: TIC32_ARATH (Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.859e-41
Identity = 94/183 (51.37%), Postives = 126/183 (68.85%), Query Frame = -1

Query: 1345 YLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRY 1893
            +  GS G SGF S+STAEEVT    D   +T I+TGA+SGIG ETARVL+ RG  +V+  RN  +  + K  IV + P +++ VM LDLSS+ SVR F SE +S  LP+N+LINNAG  A    +S+D IE+ FATN+LGHFLLTKLLL+TM  T++++   GRIVN+SS  H +   + +R+
Sbjct:    2 WFFGSKGASGFSSRSTAEEVTHGV-DGTGLTAIVTGASSGIGVETARVLSLRGVHVVMAVRNTDSGAKVKEDIVKQVPGAKLDVMELDLSSMQSVRKFASEYKSTGLPLNLLINNAGIMACPFMLSKDNIELQFATNHLGHFLLTKLLLDTMKSTSRESKREGRIVNLSSEAHRFSYPEGVRF 183

HSP 2 Score: 56.9954 bits (136), Expect = 2.567e-7
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = -2

Query: 1020 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTR 1169
            S Y + RAY  SKL NVLH  EL ++LK+   N+T N +HPG + T L R
Sbjct:  190 SSYSSMRAYGQSKLCNVLHANELTKQLKEDGVNITANSLHPGAIMTNLGR 239

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BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: TIC32_PEA (Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 3.012e-38
Identity = 91/177 (51.41%), Postives = 122/177 (68.93%), Query Frame = -1

Query: 1345 GVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRY 1875
            GVSGF   STAE+VT    D   +T I+TGA+SGIGAET RVLA RGA +++  RN+ AA++ K  I+ + P +++  + LDLSSL SV+ F SE  S   P+NILINNAG  A    +S+D IE+ FATN++GHFLLT LLL+TM KT +++   GRIVNV+S  H +   + IR+
Sbjct:    9 GVSGFSGSSTAEQVTHGI-DATGLTAIVTGASSGIGAETTRVLALRGAHVIMGVRNMVAAKDVKDTILKDIPSAKVDAIELDLSSLDSVKKFASEFNSSGRPLNILINNAGIMACPFKLSKDNIELQFATNHIGHFLLTNLLLDTMKKTTRESKKEGRIVNVASEAHRFAYPEGIRF 184

HSP 2 Score: 55.8398 bits (133), Expect = 6.618e-7
Identity = 29/62 (46.77%), Postives = 36/62 (58.06%), Query Frame = -2

Query:  993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTRERE---GLITGI 1169
            S Y+  RAY  SKLANVLH  +L + LK+   N+T N +HPG + T L R      GLI  I
Sbjct:  191 SSYNNWRAYGQSKLANVLHANQLTKHLKEDGVNITANSLHPGTIVTNLFRHNSAVNGLINVI 252

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BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_CHICK (WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.416e-25
Identity = 67/163 (41.10%), Postives = 100/163 (61.35%), Query Frame = -1

Query: 1375 FGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1863
            +   STA E+ +   DL    +IITGA SGIG ETA+  A  GA ++L  RN+    +A  RI+ E+ ++++  M LDL+SL SV+NF    +S N+P++IL+ NA  F     ++EDG+E TF  N+LGHF L +LL + + +++     P R+V VSS  H
Sbjct:  107 YDGNSTAMEILQG-RDLSGKVIIITGANSGIGFETAKSFALHGAYVILACRNMSRGNDAVQRILEEWHKAKVEAMTLDLASLRSVQNFAEAFKSKNMPLHILVCNAAIFGSSWCLTEDGLESTFQVNHLGHFYLVQLLEDILRRSS-----PARVVVVSSESH 263

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_HUMAN (WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 9.693e-24
Identity = 62/163 (38.04%), Postives = 102/163 (62.58%), Query Frame = -1

Query: 1375 FGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1863
            +   +TA E+ +   D     V++TGA SGIG ETA+  A  GA ++L  RN+  A EA +RI+ E+ ++++  M LDL+ L SV++F    ++ N+P+++L+ NA  FA   ++++DG+E TF  N+LGHF L +LL + + ++A     P R++ VSS  H
Sbjct:  107 YDGSTTAMEILQG-RDFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAMTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVNHLGHFYLVQLLQDVLCRSA-----PARVIVVSSESH 263

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_MOUSE (WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.717e-23
Identity = 62/163 (38.04%), Postives = 101/163 (61.96%), Query Frame = -1

Query: 1375 FGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1863
            +   +TA E+ +   D     V++TGA SGIG ETA+  A  GA ++L  RNL  A EA +RI+ E+ ++++  M LDL+ L SV++F    ++ N+ +++L+ NAG FA    +++DG+E TF  N+LGHF L +LL + + +++     P R++ VSS  H
Sbjct:  107 YDGSTTAMEILQG-RDFTGKVVLVTGANSGIGFETAKSFALHGAHVILACRNLSRASEAVSRILEEWHKAKVEAMTLDLAVLRSVQHFAEAFKAKNVSLHVLVCNAGTFALPWGLTKDGLETTFQVNHLGHFYLVQLLQDVLCRSS-----PARVIVVSSESH 263

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BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_PONAB (WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.854e-23
Identity = 58/148 (39.19%), Postives = 95/148 (64.19%), Query Frame = -1

Query: 1375 DLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1818
            D     V++TGA SGIG ETA+  A  GA ++L  RN+  A EA +RI+ E+ ++++  + LDL+ L SV++F    ++ N+P+++L+ NA  FA   ++++DG+E TF  N+LGHF L +LL + + ++A     P R++ VSS  H
Sbjct:  121 DFTGKVVVVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWHKAKVEAVTLDLALLRSVQHFAEAFKAKNVPLHVLVCNAATFALPWSLTKDGLETTFQVNHLGHFYLVQLLQDVLCRSA-----PARVIVVSSESH 263

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BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH13_HUMAN (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 9.821e-22
Identity = 66/153 (43.14%), Postives = 90/153 (58.82%), Query Frame = -1

Query: 1375 CPDLRSI---TVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1824
            CP   +I   TVI+TGA +GIG +TA  LA+RG  ++L  R+++  E A   I  E     +    LDL+SL S+R F +++      V+ILINNAG     H  +EDG EM F  N+LGHFLLT LLL+ +  +A     P RI+N+SS  H
Sbjct:   30 CPSKATIPGKTVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFEMQFGVNHLGHFLLTNLLLDKLKASA-----PSRIINLSSLAH 177

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BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: WWOX_DANRE (WW domain-containing oxidoreductase OS=Danio rerio GN=wwox PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.205e-21
Identity = 61/148 (41.22%), Postives = 89/148 (60.14%), Query Frame = -1

Query: 1375 DLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1818
            DL    +I+TGA SGIG ETAR  A  GA ++L  RN   A +A + I+ E+ ++ + V+ LDL+SL SVR F    ++  LP+++L+ NA   +    ++EDG E TF   +LGHFLL +LL + +  +A     P R+V VSS  H
Sbjct:  118 DLSDKVIIVTGANSGIGFETARSFALHGAHVILACRNQSRASKAASLIMGEWSKARVEVLPLDLASLRSVRQFAELFKATKLPLHVLVCNAAVCSQPWRLTEDGFESTFQICHLGHFLLVQLLQDVLRLSA-----PARVVVVSSESH 260

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH13_MOUSE (Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.026e-21
Identity = 66/153 (43.14%), Postives = 88/153 (57.52%), Query Frame = -1

Query: 1375 CPDLRSI---TVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1824
            CP   +I   TVI+TGA +GIG +TA  LAKRG  ++L  R+++  E A   I  E     +    LDL+SL S+R F  ++      V+IL+NNA      H  +EDG EM F  NYLGHFLLT LLL+ +  +A     P RI+N+SS  H
Sbjct:   30 CPSKATIPGKTVIVTGANTGIGKQTALELAKRGGNVILACRDMEKCEVAAKDIRGETLNPRVRAERLDLASLKSIREFARKVIKEEERVDILVNNAAVMRCPHWTTEDGFEMQFGVNYLGHFLLTNLLLDKLKASA-----PSRIINLSSLAH 177

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Match: RDH12_MOUSE (Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.056e-20
Identity = 61/142 (42.96%), Postives = 87/142 (61.27%), Query Frame = -1

Query: 1375 VIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIH 1800
            V+ITGA +GIG ETAR LA+RGAR+ +  R++   E A + I ++   S+++V  LDLS   S+R F     +    ++ILINNAG     ++ + DG E  F  N+LGHFLLT LLL  + ++A     P R+VN+SS  H
Sbjct:   42 VVITGANTGIGKETARELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETHFGVNHLGHFLLTYLLLERLKESA-----PARVVNLSSIAH 178

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BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2R3N0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=4 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 1.848e-119
Identity = 197/198 (99.49%), Postives = 197/198 (99.49%), Query Frame = -1

Query: 1318 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSKR 1911
            MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSKR
Sbjct:    1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSKR 198

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2RYD4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 3.263e-119
Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1

Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911
            MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK
Sbjct:    1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2R3M8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 2.140e-118
Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1

Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911
            MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK
Sbjct:    1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197

HSP 2 Score: 119.783 bits (299), Expect = 4.522e-30
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = -2

Query:  993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169
            SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT +
Sbjct:  198 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITDL 256

HSP 3 Score: 41.2022 bits (95), Expect = 4.522e-30
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = -1

Query:  853 DLVFFLASKLLKTIPQVN 906
            DLVFFLASKLLKTIPQVN
Sbjct:  255 DLVFFLASKLLKTIPQVN 272

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2MXG9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 3.934e-118
Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1

Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911
            MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK
Sbjct:    1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197

HSP 2 Score: 128.257 bits (321), Expect = 2.051e-29
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = -2

Query:  987 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGIYI 1169
            SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGIYI
Sbjct:  198 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGIYI 258

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2QWS7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 4.873e-118
Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1

Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911
            MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK
Sbjct:    1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2MXG6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 1.131e-117
Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1

Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911
            MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK
Sbjct:    1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197

HSP 2 Score: 121.324 bits (303), Expect = 1.163e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = -2

Query:  996 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITG 1169
            SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITG
Sbjct:  198 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITG 255

HSP 3 Score: 106.686 bits (265), Expect = 1.228e-21
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = -2

Query:  621 TGSCHDLLRRHASKTAKYKWEILCRLQRSMDIQTGVEFQRSCKALGCL 764
            TGSCHDLLRRHASKTAKYKWEILCRLQRSMDIQTGVEFQRSCKALGCL
Sbjct:  254 TGSCHDLLRRHASKTAKYKWEILCRLQRSMDIQTGVEFQRSCKALGCL 301

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2PB19_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G131000 PE=3 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 3.780e-117
Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = -1

Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911
            MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK
Sbjct:    1 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197

HSP 2 Score: 154.836 bits (390), Expect = 9.092e-69
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = -3

Query:  551 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDYHHM 763
            QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDYHHM
Sbjct:  270 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDYHHM 340

HSP 3 Score: 119.783 bits (299), Expect = 9.092e-69
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = -2

Query:  993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169
            SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT +
Sbjct:  198 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITDL 256

HSP 4 Score: 37.3502 bits (85), Expect = 9.092e-69
Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1

Query:  859 DLVFFLASKLLKTIPQ 906
            DLVFFLASKLLKTIPQ
Sbjct:  255 DLVFFLASKLLKTIPQ 270

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0B0P8L4_GOSAR (Short-chain dehydrogenase TIC 32, chloroplastic-like protein OS=Gossypium arboreum GN=F383_02458 PE=3 SV=1)

HSP 1 Score: 367.081 bits (941), Expect = 1.632e-116
Identity = 195/197 (98.98%), Postives = 195/197 (98.98%), Query Frame = -1

Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911
            MLETLKYLIGSTGVSGFGSKSTAEE TETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK
Sbjct:    1 MLETLKYLIGSTGVSGFGSKSTAEEATETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFLLTKLLLNTMMKTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 197

HSP 2 Score: 151.754 bits (382), Expect = 7.839e-68
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = -3

Query:  551 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDYHHM 763
            QAAATTCYVA HPRLLNISGKYFADCNEAWTSKLGSNSNE+AKLWAASEIMVSKHAKAVFDPLSAFDYHHM
Sbjct:  270 QAAATTCYVAAHPRLLNISGKYFADCNEAWTSKLGSNSNESAKLWAASEIMVSKHAKAVFDPLSAFDYHHM 340

HSP 3 Score: 119.783 bits (299), Expect = 7.839e-68
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = -2

Query:  993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169
            SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT +
Sbjct:  198 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITDL 256

HSP 4 Score: 37.3502 bits (85), Expect = 7.839e-68
Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1

Query:  859 DLVFFLASKLLKTIPQ 906
            DLVFFLASKLLKTIPQ
Sbjct:  255 DLVFFLASKLLKTIPQ 270

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A061G5K7_THECC (NAD(P)-binding Rossmann-fold superfamily protein OS=Theobroma cacao GN=TCM_016543 PE=3 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 2.348e-103
Identity = 172/197 (87.31%), Postives = 189/197 (95.94%), Query Frame = -1

Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911
            MLET+KYL GSTG SGFGSKSTAE+VTETCPDLRSIT IITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFP+++I+VMALDLSSL+SVR FVSE +SL+LP+N+LINNAGKFAHEH ISEDGIEMTFATNYLGHFLLTKLLLN M+KTAK++GV GRIVNVSSSIHGWFSGD+IR++GQISRSK
Sbjct:    1 MLETVKYLFGSTGASGFGSKSTAEQVTETCPDLRSITAIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPDAKIVVMALDLSSLSSVRKFVSEFQSLSLPLNVLINNAGKFAHEHGISEDGIEMTFATNYLGHFLLTKLLLNKMIKTAKESGVQGRIVNVSSSIHGWFSGDVIRHLGQISRSK 197

HSP 2 Score: 127.872 bits (320), Expect = 6.475e-60
Identity = 58/71 (81.69%), Postives = 62/71 (87.32%), Query Frame = -3

Query:  551 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSKHAKAVFDPLSAFDYHHM 763
            QAAATTCYVATHPRL+N+SGKYFADCNEA  SKLGSNSNEAA+LW ASEIMVS   KAVFDP + FDY HM
Sbjct:  270 QAAATTCYVATHPRLVNVSGKYFADCNEARPSKLGSNSNEAARLWTASEIMVSIDPKAVFDPRNGFDYDHM 340

HSP 3 Score: 117.087 bits (292), Expect = 6.475e-60
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = -2

Query:  993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169
            S YDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLIT +
Sbjct:  198 SPYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITDL 256

HSP 4 Score: 36.965 bits (84), Expect = 6.475e-60
Identity = 16/16 (100.00%), Postives = 16/16 (100.00%), Query Frame = -1

Query:  859 DLVFFLASKLLKTIPQ 906
            DLVFFLASKLLKTIPQ
Sbjct:  255 DLVFFLASKLLKTIPQ 270

[Close]

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Match: A0A0D2SCP5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G020400 PE=3 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 1.101e-101
Identity = 170/197 (86.29%), Postives = 184/197 (93.40%), Query Frame = -1

Query: 1321 MLETLKYLIGSTGVSGFGSKSTAEEVTETCPDLRSITVIITGATSGIGAETARVLAKRGARLVLPARNLKAAEEAKARIVSEFPESEIIVMALDLSSLTSVRNFVSELESLNLPVNILINNAGKFAHEHAISEDGIEMTFATNYLGHFXXXXXXXXXXXXTAKQTGVPGRIVNVSSSIHGWFSGDMIRYIGQISRSK 1911
            MLET+KYLIGS G SGFGSKSTAEEVTETCPDLR IT IITGATSGIGAETARVLAKRGARLV+PARNLKAA EAKARIVSEFP SEI++MALDLSSL+SVR FV + ESL+LP+N+L+NNAG+FAH HAISEDGIEMTFATNYLGHFLLTKLLLN MM+T KQTGV GRIVNVSSSI+GWFSGDMIRY+GQISRSK
Sbjct:    1 MLETVKYLIGSRGASGFGSKSTAEEVTETCPDLRFITAIITGATSGIGAETARVLAKRGARLVIPARNLKAAAEAKARIVSEFPNSEIVIMALDLSSLSSVRKFVLDFESLDLPLNLLVNNAGRFAHHHAISEDGIEMTFATNYLGHFLLTKLLLNKMMETTKQTGVQGRIVNVSSSINGWFSGDMIRYLGQISRSK 197

HSP 2 Score: 113.62 bits (283), Expect = 8.363e-50
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = -2

Query:  993 SQYDATRAYALSKLANVLHTKELAQRLKQVDANVTVNCVHPGIVRTRLTREREGLITGI 1169
            SQYDATRAYALSKLANVLHTKELAQRLK++ ANVTVNCVHPGIVRTRLTREREG IT +
Sbjct:  198 SQYDATRAYALSKLANVLHTKELAQRLKEMGANVTVNCVHPGIVRTRLTREREGFITDL 256

HSP 3 Score: 99.3673 bits (246), Expect = 8.363e-50
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = -3

Query:  602 QAAATTCYVATHPRLLNISGKYFADCNEAWTSKLGSNSNEAAKLWAASEIMVSK 763
            QAA+TTCYVAT+PRL N+SGKYFADCNE WTSKLGS+S EA+KLWAASEIMVS+
Sbjct:  270 QAASTTCYVATYPRLENVSGKYFADCNETWTSKLGSDSIEASKLWAASEIMVSE 323

HSP 4 Score: 35.039 bits (79), Expect = 8.363e-50
Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = -1

Query:  859 DLVFFLASKLLKTIPQ 906
            DLVFFLASKLLKT PQ
Sbjct:  255 DLVFFLASKLLKTTPQ 270

The following BLAST results are available for this feature:

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL

BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot)
Total hits: 25


Match Name	E-value	Identity	Description
TIC32_ARATH	6.859e-41	51.37	Short-chain dehydrogenase TIC 32, chloroplastic OS...	[more]
TIC32_PEA	3.012e-38	51.41	Short-chain dehydrogenase TIC 32, chloroplastic OS...	[more]
WWOX_CHICK	1.416e-25	41.10	WW domain-containing oxidoreductase OS=Gallus gall...	[more]
WWOX_HUMAN	9.693e-24	38.04	WW domain-containing oxidoreductase OS=Homo sapien...	[more]
WWOX_MOUSE	4.717e-23	38.04	WW domain-containing oxidoreductase OS=Mus musculu...	[more]
WWOX_PONAB	5.854e-23	39.19	WW domain-containing oxidoreductase OS=Pongo abeli...	[more]
RDH13_HUMAN	9.821e-22	43.14	Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 ...	[more]
WWOX_DANRE	1.205e-21	41.22	WW domain-containing oxidoreductase OS=Danio rerio...	[more]
RDH13_MOUSE	3.026e-21	43.14	Retinol dehydrogenase 13 OS=Mus musculus GN=Rdh13 ...	[more]
RDH12_MOUSE	1.056e-20	42.96	Retinol dehydrogenase 12 OS=Mus musculus GN=Rdh12 ...	[more]

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BLAST of g.barbadense_cottongen_reftransV1_0092931 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2R3N0_GOSRA	1.848e-119	99.49	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2RYD4_GOSRA	3.263e-119	99.49	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2R3M8_GOSRA	2.140e-118	99.49	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2MXG9_GOSRA	3.934e-118	99.49	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2QWS7_GOSRA	4.873e-118	99.49	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2MXG6_GOSRA	1.131e-117	99.49	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2PB19_GOSRA	3.780e-117	99.49	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0P8L4_GOSAR	1.632e-116	98.98	Short-chain dehydrogenase TIC 32, chloroplastic-li...	[more]
A0A061G5K7_THECC	2.348e-103	87.31	NAD(P)-binding Rossmann-fold superfamily protein O...	[more]
A0A0D2SCP5_GOSRA	1.101e-101	86.29	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00081	GDHRDH	coord: 37..54 score: 43.09 coord: 113..124 score: 43.53 coord: 163..179 score: 28.87
IPR002347	Short-chain dehydrogenase/reductase SDR	PFAM	PF00106	adh_short	coord: 37..177 e-value: 9.0E-29 score: 100.2
IPR016040	NAD(P)-binding domain	GENE3D	3.40.50.720		coord: 31..180 e-value: 1.4E-42 score: 145.2
IPR016040	NAD(P)-binding domain	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 31..185
None	No IPR available	PANTHER	PTHR24320	FAMILY NOT NAMED	coord: 13..179
None	No IPR available	PANTHER	PTHR24320:SF100	SUBFAMILY NOT NAMED	coord: 13..179

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.barbadense_cottongen_reftransV1_0092931 ID=g.barbadense_cottongen_reftransV1_0092931; Name=g.barbadense_cottongen_reftransV1_0092931; organism=Gossypium barbadense; type=contig; length=2262bp
GCCCACTTATTCTCTTCTCTCCCTTTCTTCATTTTTTTTATTGCATATTC
TTCCTAAAGAAACCCATGAACATGTACCTTATATCTATTAATATTCATCC
TGATTAGGGTTTCCAAGTACTTCCACGATTCCAAGCAAAACCCCATCAGC
TCATTAACATATATATCCATCCGCCATAATCATTTTACAATTATCACTGG
ATCCCTTTCTTTATAATCCGTCTTTAAAAAATTAGTATGGGGGTATTATA
GGGCAATATATATGCAAATTATATAATACCAGTACTAATAATAATGGATA
GAAACAGTTTTATAAGTACAAAACCCTCTTCTTTTCCAGTACTAGGTAAG
CTTCTTAACATGTACCGAACCAACATAGCTATAATTTAAGGTGCATAATA
CTTGTATATCTAATTGTCTTTTAACTGATGTATACATATACACTATATTC
CTATCATCTTTTCTCTTCCAACTAAGATATTTCATATCTTTTGCTGTTTC
TGTTTCTAATTTCTAGTCTTCTTTTTTTTTTCATCTCTTTATTTTTATTA
CATATGGTGATAATCGAAGGCACTAAGCGGATCAAACACTGCTTTAGCGT
GTTTGGAAACCATGATTTCAGAGGCAGCCCAAAGCTTTGCAGCTTCGTTG
GAATTCGACCCCAGTTTGGATGTCCATGCTTCGTTGCAGTCTGCAAAGTA
TTTCCCACTTATATTTAGCAGTCTTGGATGCGTGGCGACGTAACAAGTCG
TGGCAGCTGCCTGTACCCTCGACAAATGAAAGTCCATTGTCCATCAAAAC
CACCCACTTCAACTCTCATTAATCAAAAGCTTTAATTACTTAAGATATAT
TAGTTTACCTGAGGAATGGTTTTCAGGAGCTTGGAAGCCAAAAAGAAAAC
CAGATCTGCAGGTTAATATATATTAGATTTTAACCAGAGAGAGTTGAAAG
TTGAAAACATTAAATAAAATCAAATGGCATCTTCTATATGTATATACCTG
TTATCAAGCCCTCACGTTCCCTGGTGAGACGGGTTCTAACAATACCTGGA
TGAACACAGTTCACAGTCACGTTGGCATCCACTTGCTTCAGTCTCTGGGC
AAGCTCCTTGGTATGCAAAACGTTAGCGAGCTTCGAGAGAGCATAAGCAC
GTGTCGCATCGTATTGACTGGGAACAGACAGCCAGACAAAAAACAGACAC
ATGAATTAAAAATCGATAGGAAATGTCAAATCCAAAAGAAAAGAAACCCA
ATCTTCTGTAACAATCATTTACTCCTATACTATGTTCGATTCTGTCACTG
TTATTTATCATTCTTCACCTTTTGCTTCTGGATATCTGGCCTATATATCG
GATCATATCGCCAGAAAACCATCCATGGATACTCGACGACACATTCACTA
TTCTTCCTGGAACACCTGTTTGTTTAGCCGTCTTCATCATCGTGTTTAGC
AACAACTTCGTCAACAAAAAATGACCAAGATAATTAGTGGCAAATGTCAT
CTCGATTCCATCCTCGGAGATTGCATGTTCATGCGCAAACTTCCCGGCAT
TGTTTATGAGGATATTGACTGGCAAGTTAAGAGACTCCAACTCCGATACA
AAATTTCGAACAGAAGTGAGTGAACTAAGATCAAGAGCCATGACAATAAT
TTCTGATTCAGGAAACTCGGAAACTATCCTAGCCTTTGCTTCCTCAGCGG
CTTTAAGGTTCCGAGCTGGAAGCACCAACCTCGCTCCTCGTTTGGCCAAC
ACTCTGGCCGTCTCAGCTCCGATCCCCGACGTCGCACCTGTGATGATGAC
TGTTATAGAGCGGAGATCAGGGCAAGTCTCGGTGACTTCCTCGGCGGTGG
ACTTAGAGCCGAAGCCGCTGACTCCTGTTGAGCCGATCAGGTACTTCAGA
GTCTCTAGCATTTCAACTTCCTTTTTTTTCTTTTAGATATGATACAATTT
TTGAGAGTTTAAAGTTGGGTGAAGAACACACAAAATGACGTAAAAATCAT
TTAAGAAAAACAAACAGCAATAAAGGGGTTTGTTTACTCTTGTGGGATTT
AAGGTTTACTATAGAAAGAAAAGATTATCAGAAATGAAAGTTTTAGGGGA
AAGGAGCTAAAAGCTAATCTGTTTCAAGGACAAAAGAGAAAGTGGGATCG
GATTTTATAATGGAGCTAGCTTTGGTGGGGGAGAATCCAATTGAGAGAAC
GAGAGAGAGAGAGAATGGATTATATGTTTGTCATTTGATTGATTATATTT
AACGAAAATTAA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR002347	SDR_fam
IPR016040	NAD(P)-bd_dom

Search form

g.barbadense_cottongen_reftransV1_0092931, g.barbadense_cottongen_reftransV1_0092931 (contig) Gossypium barbadense

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