g.barbadense_cottongen_reftransV1_0092017, g.barbadense_cottongen_reftransV1_0092017 (contig) Gossypium barbadense
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A0A0D2SFI6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G169000 PE=4 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 1.072e-65 Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 2 Query: 1100 TGLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 +GLCHI+QVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQ E Sbjct: 49 SGLCHIAQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQAE 130 HSP 2 Score: 116.316 bits (290), Expect = 1.072e-65 Identity = 65/100 (65.00%), Postives = 67/100 (67.00%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQVFRWSIAD 1721 AERCRLSIGHSEVLTNDPNVVA ++ISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQVFRWSIAD Sbjct: 129 AERCRLSIGHSEVLTNDPNVVAA--------------------------------INISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQVFRWSIAD 196
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A0A0B0P7I3_GOSAR (Putative RNA-binding ylmH OS=Gossypium arboreum GN=F383_28730 PE=4 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 1.206e-62 Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 2 Query: 1100 TGLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 +GLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQ E Sbjct: 49 SGLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQAE 130 HSP 2 Score: 100.138 bits (248), Expect = 1.206e-62 Identity = 57/92 (61.96%), Postives = 59/92 (64.13%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCRLSIGHSEVLTNDPNVVA ++ISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ Sbjct: 129 AERCRLSIGHSEVLTNDPNVVAA--------------------------------INISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 188 HSP 3 Score: 204.912 bits (520), Expect = 2.777e-55 Identity = 102/110 (92.73%), Postives = 105/110 (95.45%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSV 2572 F+M L +VANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNW TVTKNGTTLKTGDI+SVSGKGRLKIGEINS KKGKFSV Sbjct: 204 FLMSTLDKVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWTTVTKNGTTLKTGDIVSVSGKGRLKIGEINSAKKGKFSV 313
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A0A0D2U2T4_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_013G169000 PE=4 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 1.304e-60 Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 2 Query: 1100 TGLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 +GLCHI+QVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQ E Sbjct: 49 SGLCHIAQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQAE 130 HSP 2 Score: 99.3673 bits (246), Expect = 1.304e-60 Identity = 57/92 (61.96%), Postives = 59/92 (64.13%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCRLSIGHSEVLTNDPNVVA ++ISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ Sbjct: 129 AERCRLSIGHSEVLTNDPNVVAA--------------------------------INISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 188
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A0A0D2U2W6_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_013G1708002 PE=4 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 1.373e-60 Identity = 104/108 (96.30%), Postives = 107/108 (99.07%), Query Frame = 2 Query: 2267 VANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 VANVSVSCTQIPLLALEYEPPRTQSFKT+EASLRVDALASAGFKISRSKLV+LISNGDVRVNW TVTKNGTTLKTGDI+SVSGKGRLKIGEINSTKKGKFSVELIRYL Sbjct: 1 VANVSVSCTQIPLLALEYEPPRTQSFKTVEASLRVDALASAGFKISRSKLVNLISNGDVRVNWTTVTKNGTTLKTGDIVSVSGKGRLKIGEINSTKKGKFSVELIRYL 108
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A0A061F6L8_THECC (RNA-binding S4 domain-containing protein OS=Theobroma cacao GN=TCM_031522 PE=4 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 6.425e-56 Identity = 72/82 (87.80%), Postives = 78/82 (95.12%), Query Frame = 2 Query: 1100 TGLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 +GLCH++QVIKGDNDVLLKGVGDKSAIEEVKHIL+ ARRAATRREV HTDFLTPPV+KESM+VL KLADVKAVAQGGYPQ E Sbjct: 49 SGLCHVAQVIKGDNDVLLKGVGDKSAIEEVKHILEMARRAATRREVLHTDFLTPPVIKESMLVLGKLADVKAVAQGGYPQAE 130 HSP 2 Score: 90.8929 bits (224), Expect = 6.425e-56 Identity = 51/92 (55.43%), Postives = 55/92 (59.78%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCR+SIGHSEVLT+DP D + LN I+GNF FQPCSHGDFLGAILG GIAREKLGDIILQ Sbjct: 129 AERCRISIGHSEVLTSDP--------------------DVVAALN------------ITGNFGFQPCSHGDFLGAILGTGIAREKLGDIILQ 188 HSP 3 Score: 206.068 bits (523), Expect = 9.360e-56 Identity = 100/116 (86.21%), Postives = 109/116 (93.97%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 F+M L +V NVSVSC QIPLLALEYEPPRTQSFKT+EASLRVDALASAGFKISRSKLV+LISNGDVRVNW +VTKNGT LKTGDI+SVSGKGRLKIGEIN+T+KGKF+VELIRYL Sbjct: 204 FLMSTLDKVGNVSVSCMQIPLLALEYEPPRTQSFKTVEASLRVDALASAGFKISRSKLVNLISNGDVRVNWTSVTKNGTILKTGDIVSVSGKGRLKIGEINTTRKGKFAVELIRYL 319
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A0A067F592_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020729mg PE=4 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 1.664e-55 Identity = 97/116 (83.62%), Postives = 111/116 (95.69%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 +++ L +V NVSVSCT+IPLLALEYEPPRT+SFKTIEASLRVDALASAGFK+SRSKLV+LISNGDVRVNW TVTKNGTTL+TGDI+SVSGKGR+KIGEINST+KGKF+VELI+YL Sbjct: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236 HSP 2 Score: 87.8113 bits (216), Expect = 1.016e-33 Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 2 Query: 1208 ARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 ARRA++RREV H+DFLTPPVLKESM+ L+KLADVKAVAQGGYPQ E Sbjct: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 47 HSP 3 Score: 85.8853 bits (211), Expect = 1.016e-33 Identity = 47/92 (51.09%), Postives = 55/92 (59.78%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCRLS+GH E LT+DP++VA +SI+GNF FQPCSHGDFLG+ILG GIAREK+GDIILQ Sbjct: 46 AERCRLSVGHPEALTSDPDIVAA--------------------------------LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 105
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: V4WES6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008924mg PE=4 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 1.935e-55 Identity = 97/116 (83.62%), Postives = 111/116 (95.69%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 +++ L +V NVSVSCT+IPLLALEYEPPRT+SFKTIEASLRVDALASAGFK+SRSKLV+LISNGDVRVNW TVTKNGTTL+TGDI+SVSGKGR+KIGEINST+KGKF+VELI+YL Sbjct: 121 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 236 HSP 2 Score: 87.8113 bits (216), Expect = 8.467e-34 Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 2 Query: 1208 ARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 ARRA++RREV H+DFLTPPVLKESM+ L+KLADVKAVAQGGYPQ E Sbjct: 2 ARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 47 HSP 3 Score: 86.2705 bits (212), Expect = 8.467e-34 Identity = 47/92 (51.09%), Postives = 56/92 (60.87%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCRLS+GH E+LT+DP++VA +SI+GNF FQPCSHGDFLG+ILG GIAREK+GDIILQ Sbjct: 46 AERCRLSVGHPELLTSDPDIVAA--------------------------------LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 105
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: V4ULC7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008924mg PE=4 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 1.370e-54 Identity = 97/116 (83.62%), Postives = 111/116 (95.69%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 +++ L +V NVSVSCT+IPLLALEYEPPRT+SFKTIEASLRVDALASAGFK+SRSKLV+LISNGDVRVNW TVTKNGTTL+TGDI+SVSGKGR+KIGEINST+KGKF+VELI+YL Sbjct: 185 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 300 HSP 2 Score: 85.5001 bits (210), Expect = 1.431e-31 Identity = 47/92 (51.09%), Postives = 56/92 (60.87%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCRLS+GH E+LT+DP++VA +SI+GNF FQPCSHGDFLG+ILG GIAREK+GDIILQ Sbjct: 110 AERCRLSVGHPELLTSDPDIVAA--------------------------------LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 169 HSP 3 Score: 80.8777 bits (198), Expect = 1.431e-31 Identity = 43/82 (52.44%), Postives = 52/82 (63.41%), Query Frame = 2 Query: 1100 TGLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 +G+ H+ Q +KG+ D LLKGVGDK+AIEEVKHIL+ ESM+ L+KLADVKAVAQGGYPQ E Sbjct: 52 SGIRHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEM----------------------ESMMALEKLADVKAVAQGGYPQAE 111
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: A0A067F8M8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020729mg PE=4 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 1.961e-54 Identity = 97/116 (83.62%), Postives = 111/116 (95.69%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 +++ L +V NVSVSCT+IPLLALEYEPPRT+SFKTIEASLRVDALASAGFK+SRSKLV+LISNGDVRVNW TVTKNGTTL+TGDI+SVSGKGR+KIGEINST+KGKF+VELI+YL Sbjct: 207 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 322 HSP 2 Score: 134.42 bits (337), Expect = 1.911e-47 Identity = 61/82 (74.39%), Postives = 73/82 (89.02%), Query Frame = 2 Query: 1100 TGLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 +G+ H+ Q +KG+ D LLKGVGDK+AIEEVKHIL+ ARRA++RREV H+DFLTPPVLKESM+ L+KLADVKAVAQGGYPQ E Sbjct: 52 SGIRHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133 HSP 3 Score: 85.1149 bits (209), Expect = 1.911e-47 Identity = 47/92 (51.09%), Postives = 55/92 (59.78%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCRLS+GH E LT+DP++VA +SI+GNF FQPCSHGDFLG+ILG GIAREK+GDIILQ Sbjct: 132 AERCRLSVGHPEALTSDPDIVAA--------------------------------LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Match: V4URF5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008924mg PE=4 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 2.082e-54 Identity = 97/116 (83.62%), Postives = 111/116 (95.69%), Query Frame = 2 Query: 2243 FVMCFLLQVANVSVSCTQIPLLALEYEPPRTQSFKTIEASLRVDALASAGFKISRSKLVDLISNGDVRVNWATVTKNGTTLKTGDIISVSGKGRLKIGEINSTKKGKFSVELIRYL 2590 +++ L +V NVSVSCT+IPLLALEYEPPRT+SFKTIEASLRVDALASAGFK+SRSKLV+LISNGDVRVNW TVTKNGTTL+TGDI+SVSGKGR+KIGEINST+KGKF+VELI+YL Sbjct: 207 YLITSLEKVGNVSVSCTRIPLLALEYEPPRTKSFKTIEASLRVDALASAGFKLSRSKLVNLISNGDVRVNWTTVTKNGTTLRTGDIVSVSGKGRIKIGEINSTRKGKFAVELIQYL 322 HSP 2 Score: 134.42 bits (337), Expect = 1.633e-47 Identity = 61/82 (74.39%), Postives = 73/82 (89.02%), Query Frame = 2 Query: 1100 TGLCHISQVIKGDNDVLLKGVGDKSAIEEVKHILDTARRAATRREVFHTDFLTPPVLKESMIVLQKLADVKAVAQGGYPQVE 1345 +G+ H+ Q +KG+ D LLKGVGDK+AIEEVKHIL+ ARRA++RREV H+DFLTPPVLKESM+ L+KLADVKAVAQGGYPQ E Sbjct: 52 SGIRHLIQAVKGNFDDLLKGVGDKNAIEEVKHILEMARRASSRREVLHSDFLTPPVLKESMMALEKLADVKAVAQGGYPQAE 133 HSP 3 Score: 85.5001 bits (210), Expect = 1.633e-47 Identity = 47/92 (51.09%), Postives = 56/92 (60.87%), Query Frame = 3 Query: 1422 AERCRLSIGHSEVLTNDPNXXXXXXXXXXXXXXXW*LLDRIETLNQDICIFGFFFVSISGNFSFQPCSHGDFLGAILGKGIAREKLGDIILQ 1697 AERCRLS+GH E+LT+DP++VA +SI+GNF FQPCSHGDFLG+ILG GIAREK+GDIILQ Sbjct: 132 AERCRLSVGHPELLTSDPDIVAA--------------------------------LSITGNFGFQPCSHGDFLGSILGTGIAREKIGDIILQ 191 The following BLAST results are available for this feature:
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-01 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs Swissprot) Total hits: 0
BLAST of g.barbadense_cottongen_reftransV1_0092017 vs. ExPASy TrEMBL
Analysis Date: 2016-11-02 (Homology Analysis for Gossypium barbadense CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium barbadense CottonGen RefTrans V1
Date Performed: 2016-11-02
Sequences
The
following sequences are available for this feature:
contig sequence >g.barbadense_cottongen_reftransV1_0092017 ID=g.barbadense_cottongen_reftransV1_0092017; Name=g.barbadense_cottongen_reftransV1_0092017; organism=Gossypium barbadense; type=contig; length=2863bpback to top |