rna-gnl|WGS_VKGI|Godar.A01G031300.1, rna-gnl|WGS_VKGI|Godar.A01G031300.1_AD5_HGS_v1.1 (mRNA) Gossypium darwinii
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Transcript Overview
Cross References
External references for this mRNA
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Homology
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. ExPASy Swiss-Prot
Match: FLP3_ORYSJ (Flowering-promoting factor 1-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0460200 PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 7.209e-47 Identity = 72/112 (64.29%), Postives = 87/112 (77.68%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVD-SFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRD 162
M+GVWVFK+G+VR VENPG + S G RRK+L+ PS E +ASY VLE +L LGWERY DP LLQFH+RST+HLIS+P+DFSKFK +HM+DIVVK RN+FEVRD
Sbjct: 1 MAGVWVFKDGIVRRVENPGSEESSSAGDGGGGGRRKVLVHVPSGEVVASYEVLERRLRELGWERYLTDPCLLQFHQRSTVHLISVPRDFSKFKLVHMYDIVVKTRNVFEVRD 112
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. ExPASy Swiss-Prot
Match: FLP1_ORYSJ (Flowering-promoting factor 1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RAA1 PE=1 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 3.095e-43 Identity = 67/111 (60.36%), Postives = 80/111 (72.07%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRD 162
MSGVWVFKNGVVRLVE + G RRK L+ TPS + ++SYA LE +L+ LGWERYY+DP L QFHKR ++ LISLP DFS F S+HM+DIVVKNR+ F V D
Sbjct: 1 MSGVWVFKNGVVRLVEKQQATAGTAVAGG---RRKALVHTPSGQVVSSYAALEARLTALGWERYYEDPSLFQFHKRGSLDLISLPADFSAFSSVHMYDIVVKNRDSFRVVD 108
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. ExPASy Swiss-Prot
Match: FPF1_SINAL (Flowering-promoting factor 1 OS=Sinapis alba OX=3728 GN=FPF1 PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 2.090e-42 Identity = 70/113 (61.95%), Postives = 85/113 (75.22%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYD--DPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRD 162
MSGVWVFKNGV+RLVENP D +N+RRK+++ P+ E I+SY+ LE L LGWERY+ D DLLQFHKRS+I LISLPKDF+KF S++M+DIVVKN N F VRD
Sbjct: 1 MSGVWVFKNGVIRLVENPNQSGGD-----TNSRRKVMVYLPTGEVISSYSTLEQILRSLGWERYFGGGDTDLLQFHKRSSIDLISLPKDFTKFSSVYMYDIVVKNPNYFHVRD 108
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. ExPASy Swiss-Prot
Match: FPF1_ARATH (Flowering-promoting factor 1 OS=Arabidopsis thaliana OX=3702 GN=FPF1 PE=2 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 6.665e-41 Identity = 69/115 (60.00%), Postives = 87/115 (75.65%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNT--RRKLLIDTPSNEAIASYAVLEHKLSILGWERYYD--DPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRD 162
MSGVWVFKNGV+RLVENP ++ GS+T RRK+++ P+ E ++SY+ LE L LGWERY+ D DLLQFHKRS+I LISLP+DF+KF S++M+DIVVKN N F VRD
Sbjct: 1 MSGVWVFKNGVIRLVENP-------NQSGSDTQNRRKVMVYLPTGEVVSSYSTLEQILQSLGWERYFGGGDTDLLQFHKRSSIDLISLPRDFTKFNSVYMYDIVVKNPNYFHVRD 108
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. ExPASy Swiss-Prot
Match: FLP2_ARATH (Flowering-promoting factor 1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLP2 PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 5.516e-40 Identity = 67/112 (59.82%), Postives = 84/112 (75.00%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYD-DPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRD 162
MSGVWVF NGV+RLVENP + G S+ RR +L+ P+ EA++SY+ LE L LGWERY+ D DL+Q+HKRS+I LISLP+DFSKF S++M+DIVVKN N F VRD
Sbjct: 1 MSGVWVFNNGVIRLVENP--NQSGGVSTQSHGRRNVLVYLPTGEAVSSYSSLEQILRSLGWERYFSGDSDLIQYHKRSSIDLISLPRDFSKFNSVYMYDIVVKNPNSFHVRD 110
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. ExPASy Swiss-Prot
Match: FLP4_ORYSJ (Flowering-promoting factor 1-like protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0282400 PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 2.077e-37 Identity = 60/111 (54.05%), Postives = 81/111 (72.97%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRD 162
M+GVWVF++G+VR ++ S G K+L+ PS+E + SY VLE +L LGWERY +DP LLQFH+RST+HLIS+P+DFS+ K +HM+D+VVK RN+FEVRD
Sbjct: 1 MAGVWVFEDGMVRRADSEA-PSRGRGVGGGGGGGKVLVHVPSSEVVTSYEVLERRLRELGWERYLNDPCLLQFHQRSTVHLISVPRDFSRLKLVHMYDVVVKTRNVFEVRD 110
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. ExPASy Swiss-Prot
Match: FLP2_ORYSJ (Flowering-promoting factor 1-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0933500 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 2.903e-37 Identity = 69/127 (54.33%), Postives = 83/127 (65.35%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDS-------FDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPD--------LLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
MSGVWVF+NGVV+LVENP + G G RRK L+ P+ E + SYA LE KL+ LGWERYY +LQFHKRS++ LISLPKDFS+F S+HM+DIVVKNR+ F V DV
Sbjct: 1 MSGVWVFRNGVVKLVENPPASANSGGGGGGGGGGGGGGIRRKALLHMPTGEVVTSYASLERKLAALGWERYYSGGGGAAAAAAMMLQFHKRSSVDLISLPKDFSQFGSVHMYDIVVKNRDAFRVIDV 127
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. ExPASy Swiss-Prot
Match: FLP1_ARATH (Flowering-promoting factor 1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLP1 PE=2 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 3.229e-37 Identity = 73/124 (58.87%), Postives = 87/124 (70.16%), Query Frame = 0
Query: 52 MSGVWVF-KNGVVRLVENP--------GVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYY--DDPD-LLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
MSGVWVF KNGV+RLVENP S G Q RRK+L+ PS+E ++SY LE L LGWERYY D+ D LLQFHKR++I LISLP+DFSKF S+HM+DIVVKN N+F VRD+
Sbjct: 1 MSGVWVFNKNGVMRLVENPYNQSAGDSSESSSSGGNQQQRMRRKILVHLPSSEVVSSYGSLEKILKNLGWERYYSGDNTDHLLQFHKRTSIDLISLPRDFSKFNSIHMYDIVVKNPNVFHVRDM 124
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. ExPASy Swiss-Prot
Match: FLP5_ORYSJ (Flowering-promoting factor 1-like protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0671000 PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.807e-27 Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = 0
Query: 53 SGVWVFKN-GVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKR-STIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
GVWVF+N GV+ L E T RK L+ ++E I S LE +L LGWERYY+D LQ H+R + LIS+P+DFS+F+S HM+D+VVKNR+ F+V D+
Sbjct: 4 GGVWVFRNNGVMELEEQA-------------TSRKALVHVATSEVIRSTEALERRLGALGWERYYEDRATLQLHRRDGSADLISIPRDFSRFRSTHMYDVVVKNRDHFKVVDL 103
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. Araport11
Match: AT5G24860.1 (| flowering promoting factor 1 | Chr5:8541822-8542154 FORWARD LENGTH=110 | 201606) HSP 1 Score: 136.346 bits (342), Expect = 6.924e-42 Identity = 69/115 (60.00%), Postives = 87/115 (75.65%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNT--RRKLLIDTPSNEAIASYAVLEHKLSILGWERYYD--DPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRD 162
MSGVWVFKNGV+RLVENP ++ GS+T RRK+++ P+ E ++SY+ LE L LGWERY+ D DLLQFHKRS+I LISLP+DF+KF S++M+DIVVKN N F VRD
Sbjct: 1 MSGVWVFKNGVIRLVENP-------NQSGSDTQNRRKVMVYLPTGEVVSSYSTLEQILQSLGWERYFGGGDTDLLQFHKRSSIDLISLPRDFTKFNSVYMYDIVVKNPNYFHVRD 108
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. Araport11
Match: AT5G24860.3 (| flowering promoting factor 1 | Chr5:8541714-8542154 FORWARD LENGTH=146 | 201606) HSP 1 Score: 135.961 bits (341), Expect = 2.533e-41 Identity = 69/115 (60.00%), Postives = 87/115 (75.65%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNT--RRKLLIDTPSNEAIASYAVLEHKLSILGWERYYD--DPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRD 162
MSGVWVFKNGV+RLVENP ++ GS+T RRK+++ P+ E ++SY+ LE L LGWERY+ D DLLQFHKRS+I LISLP+DF+KF S++M+DIVVKN N F VRD
Sbjct: 37 MSGVWVFKNGVIRLVENP-------NQSGSDTQNRRKVMVYLPTGEVVSSYSTLEQILQSLGWERYFGGGDTDLLQFHKRSSIDLISLPRDFTKFNSVYMYDIVVKNPNYFHVRD 144
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. Araport11
Match: AT5G24860.2 (| flowering promoting factor 1 | Chr5:8541633-8542154 FORWARD LENGTH=173 | 201606) HSP 1 Score: 136.346 bits (342), Expect = 4.205e-41 Identity = 69/115 (60.00%), Postives = 87/115 (75.65%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNT--RRKLLIDTPSNEAIASYAVLEHKLSILGWERYYD--DPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRD 162
MSGVWVFKNGV+RLVENP ++ GS+T RRK+++ P+ E ++SY+ LE L LGWERY+ D DLLQFHKRS+I LISLP+DF+KF S++M+DIVVKN N F VRD
Sbjct: 64 MSGVWVFKNGVIRLVENP-------NQSGSDTQNRRKVMVYLPTGEVVSSYSTLEQILQSLGWERYFGGGDTDLLQFHKRSSIDLISLPRDFTKFNSVYMYDIVVKNPNYFHVRD 171
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. Araport11
Match: AT5G10625.1 (| flowering-promoting factor-like protein | Chr5:3358934-3359272 FORWARD LENGTH=112 | 201606) HSP 1 Score: 134.035 bits (336), Expect = 5.730e-41 Identity = 67/112 (59.82%), Postives = 84/112 (75.00%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYD-DPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRD 162
MSGVWVF NGV+RLVENP + G S+ RR +L+ P+ EA++SY+ LE L LGWERY+ D DL+Q+HKRS+I LISLP+DFSKF S++M+DIVVKN N F VRD
Sbjct: 1 MSGVWVFNNGVIRLVENP--NQSGGVSTQSHGRRNVLVYLPTGEAVSSYSSLEQILRSLGWERYFSGDSDLIQYHKRSSIDLISLPRDFSKFNSVYMYDIVVKNPNSFHVRD 110
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. Araport11
Match: AT4G31380.1 (| flowering-promoting factor-like protein | Chr4:15230008-15230382 FORWARD LENGTH=124 | 201606) HSP 1 Score: 127.102 bits (318), Expect = 3.355e-38 Identity = 73/124 (58.87%), Postives = 87/124 (70.16%), Query Frame = 0
Query: 52 MSGVWVF-KNGVVRLVENP--------GVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYY--DDPD-LLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
MSGVWVF KNGV+RLVENP S G Q RRK+L+ PS+E ++SY LE L LGWERYY D+ D LLQFHKR++I LISLP+DFSKF S+HM+DIVVKN N+F VRD+
Sbjct: 1 MSGVWVFNKNGVMRLVENPYNQSAGDSSESSSSGGNQQQRMRRKILVHLPSSEVVSSYGSLEKILKNLGWERYYSGDNTDHLLQFHKRTSIDLISLPRDFSKFNSIHMYDIVVKNPNVFHVRDM 124
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. NCBI nr
Match: gi|1347689393|gb|PPR90772.1| (hypothetical protein GOBAR_AA29924 [Gossypium barbadense]) HSP 1 Score: 232.261 bits (591), Expect = 2.120e-76 Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAI SYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV
Sbjct: 1 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAITSYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 112
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. NCBI nr
Match: gi|1050631759|ref|XP_017638821.1| (PREDICTED: flowering-promoting factor 1-like protein 3 [Gossypium arboreum]) HSP 1 Score: 228.794 bits (582), Expect = 4.936e-75 Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLI TPSNEAI SYAVLEHKLSILGWERYYDDPDLLQFHKRST+HLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV
Sbjct: 1 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIHTPSNEAITSYAVLEHKLSILGWERYYDDPDLLQFHKRSTVHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 112
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. NCBI nr
Match: gi|1028961646|ref|XP_016724308.1| (PREDICTED: flowering-promoting factor 1-like protein 3 [Gossypium hirsutum] >gi|1344129975|gb|PPE02310.1| hypothetical protein GOBAR_DD00644 [Gossypium barbadense]) HSP 1 Score: 225.328 bits (573), Expect = 1.200e-73 Identity = 107/112 (95.54%), Postives = 109/112 (97.32%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLI TPSNEAI SYA+LE KLSILGWERYYDDPDLLQFHKRST+HLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV
Sbjct: 1 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIHTPSNEAITSYAILERKLSILGWERYYDDPDLLQFHKRSTVHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 112
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. NCBI nr
Match: gi|823130381|ref|XP_012453140.1| (PREDICTED: flowering-promoting factor 1-like protein 3 [Gossypium raimondii] >gi|657261879|gb|AID51342.1| flowering promoting factor 1-like protein 1 [Gossypium hirsutum] >gi|763745189|gb|KJB12628.1| hypothetical protein B456_002G028100 [Gossypium raimondii]) HSP 1 Score: 224.172 bits (570), Expect = 3.755e-73 Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
MSGVWVFKNGVVRLVENPGVDSFDGSRQGSN RRKLLI TPSNEAI SYAVLE KLSILGWERYYDDPDLLQFHKRST+HLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV
Sbjct: 1 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNARRKLLIHTPSNEAITSYAVLERKLSILGWERYYDDPDLLQFHKRSTVHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 112
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. NCBI nr
Match: gi|1173841202|ref|XP_012083921.2| (flowering-promoting factor 1-like protein 3 [Jatropha curcas]) HSP 1 Score: 213.386 bits (542), Expect = 1.035e-68 Identity = 98/117 (83.76%), Postives = 109/117 (93.16%), Query Frame = 0
Query: 47 LFDKPMSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
L ++ MSGVWVFKNGVVRLVENPG +S DGSRQGS++RRK+L+ TPSNE I SY+VLEHKLS LGWERYYDDPDLLQFHKRST+HLISLPKDFSKFKSMHM+DIVVKNRNMFEVRD+
Sbjct: 17 LKERKMSGVWVFKNGVVRLVENPGAESLDGSRQGSSSRRKVLVHTPSNEIITSYSVLEHKLSSLGWERYYDDPDLLQFHKRSTVHLISLPKDFSKFKSMHMYDIVVKNRNMFEVRDM 133
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. NCBI nr
Match: gi|643716012|gb|KDP27785.1| (hypothetical protein JCGZ_18865 [Jatropha curcas]) HSP 1 Score: 210.69 bits (535), Expect = 7.828e-68 Identity = 97/112 (86.61%), Postives = 106/112 (94.64%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
MSGVWVFKNGVVRLVENPG +S DGSRQGS++RRK+L+ TPSNE I SY+VLEHKLS LGWERYYDDPDLLQFHKRST+HLISLPKDFSKFKSMHM+DIVVKNRNMFEVRD+
Sbjct: 1 MSGVWVFKNGVVRLVENPGAESLDGSRQGSSSRRKVLVHTPSNEIITSYSVLEHKLSSLGWERYYDDPDLLQFHKRSTVHLISLPKDFSKFKSMHMYDIVVKNRNMFEVRDM 112
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. NCBI nr
Match: gi|508714592|gb|EOY06489.1| (Flowering promoting factor 1 [Theobroma cacao]) HSP 1 Score: 213.386 bits (542), Expect = 8.742e-68 Identity = 114/165 (69.09%), Postives = 122/165 (73.94%), Query Frame = 0
Query: 16 PPFTALNSPIYI----HPLQTTPIANTFSIAI----SSPLFDKP---------MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
P L+SPIY HP+ PIA +AI S LF MSGVWVFKNGVVRLVENPG +S DGSRQGSN RRK+L+ TPSNE I SYAVLE KLS LGWERYYDDPDLLQFHKRST+HLISLPKDFSKFKSMHMFDIVVKNRN FEVRD+
Sbjct: 31 PILQGLDSPIYTLQSHHPM--YPIAKRELLAIFFQSSKSLFLSTQVRIFFLVRMSGVWVFKNGVVRLVENPGAESMDGSRQGSNIRRKVLVHTPSNEVITSYAVLERKLSSLGWERYYDDPDLLQFHKRSTVHLISLPKDFSKFKSMHMFDIVVKNRNAFEVRDM 193
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. NCBI nr
Match: gi|1063484028|ref|XP_017974763.1| (PREDICTED: flowering-promoting factor 1-like protein 1 [Theobroma cacao]) HSP 1 Score: 210.305 bits (534), Expect = 2.681e-67 Identity = 98/112 (87.50%), Postives = 103/112 (91.96%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
MSGVWVFKNGVVRLVENPG +S DGSRQGSN RRK+L+ TPSNE I SYAVLE KLS LGWERYYDDPDLLQFHKRST+HLISLPKDFSKFKSMHMFDIVVKNRN FEVRD+
Sbjct: 34 MSGVWVFKNGVVRLVENPGAESMDGSRQGSNIRRKVLVHTPSNEVITSYAVLERKLSSLGWERYYDDPDLLQFHKRSTVHLISLPKDFSKFKSMHMFDIVVKNRNAFEVRDM 145
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. NCBI nr
Match: gi|1216991749|ref|XP_021634965.1| (flowering-promoting factor 1-like protein 3 [Hevea brasiliensis]) HSP 1 Score: 208.764 bits (530), Expect = 3.837e-67 Identity = 96/112 (85.71%), Postives = 105/112 (93.75%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
MSGVW+FKNGVVRLVENPG +S DGSRQGS+ RRK+L+ TP+NE I SYAVLE+KLS LGWERYYDDPDLLQFHKRST+HLISLPKDFSKFKSMHMFDIVVKNRNMFEVRD+
Sbjct: 1 MSGVWIFKNGVVRLVENPGAESLDGSRQGSSARRKVLVHTPTNEVITSYAVLENKLSSLGWERYYDDPDLLQFHKRSTVHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDM 112
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. NCBI nr
Match: gi|566259353|ref|XP_006389236.1| (hypothetical protein POPTR_0034s00300g [Populus trichocarpa] >gi|1334310877|gb|PNT25925.1| hypothetical protein POPTR_008G209300v3 [Populus trichocarpa]) HSP 1 Score: 208.379 bits (529), Expect = 6.014e-67 Identity = 97/112 (86.61%), Postives = 104/112 (92.86%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
MSGVWVFKNGVVRLVENPG +S DGSRQGSNTRRK+L+ TPSNE I SYAVLE KLS LGWERYYDDPDLLQFH RST+HLISLPKDF+KFKSMHM+DIVVKNRNMFEVRD+
Sbjct: 1 MSGVWVFKNGVVRLVENPGAESLDGSRQGSNTRRKVLVHTPSNEVITSYAVLERKLSSLGWERYYDDPDLLQFHIRSTVHLISLPKDFNKFKSMHMYDIVVKNRNMFEVRDM 112
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. ExPASy TrEMBL
Match: A0A2P5WI52_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA29924 PE=4 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 1.781e-76 Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAI SYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV
Sbjct: 1 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAITSYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 112
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. ExPASy TrEMBL
Match: A0A2P5STU4_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD00644 PE=4 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 1.008e-73 Identity = 107/112 (95.54%), Postives = 109/112 (97.32%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLI TPSNEAI SYA+LE KLSILGWERYYDDPDLLQFHKRST+HLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV
Sbjct: 1 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIHTPSNEAITSYAILERKLSILGWERYYDDPDLLQFHKRSTVHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 112
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. ExPASy TrEMBL
Match: A0A1U8MFG3_GOSHI (flowering-promoting factor 1-like protein 3 OS=Gossypium hirsutum OX=3635 GN=LOC107936147 PE=4 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 1.008e-73 Identity = 107/112 (95.54%), Postives = 109/112 (97.32%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLI TPSNEAI SYA+LE KLSILGWERYYDDPDLLQFHKRST+HLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV
Sbjct: 1 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIHTPSNEAITSYAILERKLSILGWERYYDDPDLLQFHKRSTVHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 112
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. ExPASy TrEMBL
Match: A0A0D2NHG3_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G028100 PE=4 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 3.155e-73 Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
MSGVWVFKNGVVRLVENPGVDSFDGSRQGSN RRKLLI TPSNEAI SYAVLE KLSILGWERYYDDPDLLQFHKRST+HLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV
Sbjct: 1 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNARRKLLIHTPSNEAITSYAVLERKLSILGWERYYDDPDLLQFHKRSTVHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 112
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. ExPASy TrEMBL
Match: A0A068EPU2_GOSHI (Flowering promoting factor 1-like protein 1 OS=Gossypium hirsutum OX=3635 GN=FLP1 PE=2 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 3.155e-73 Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
MSGVWVFKNGVVRLVENPGVDSFDGSRQGSN RRKLLI TPSNEAI SYAVLE KLSILGWERYYDDPDLLQFHKRST+HLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV
Sbjct: 1 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNARRKLLIHTPSNEAITSYAVLERKLSILGWERYYDDPDLLQFHKRSTVHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 112
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. ExPASy TrEMBL
Match: A0A067K6A6_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_18865 PE=4 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 6.576e-68 Identity = 97/112 (86.61%), Postives = 106/112 (94.64%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
MSGVWVFKNGVVRLVENPG +S DGSRQGS++RRK+L+ TPSNE I SY+VLEHKLS LGWERYYDDPDLLQFHKRST+HLISLPKDFSKFKSMHM+DIVVKNRNMFEVRD+
Sbjct: 1 MSGVWVFKNGVVRLVENPGAESLDGSRQGSSSRRKVLVHTPSNEIITSYSVLEHKLSSLGWERYYDDPDLLQFHKRSTVHLISLPKDFSKFKSMHMYDIVVKNRNMFEVRDM 112
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. ExPASy TrEMBL
Match: A0A061EW40_THECC (Flowering promoting factor 1 OS=Theobroma cacao OX=3641 GN=TCM_021194 PE=4 SV=1) HSP 1 Score: 213.386 bits (542), Expect = 7.344e-68 Identity = 114/165 (69.09%), Postives = 122/165 (73.94%), Query Frame = 0
Query: 16 PPFTALNSPIYI----HPLQTTPIANTFSIAI----SSPLFDKP---------MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
P L+SPIY HP+ PIA +AI S LF MSGVWVFKNGVVRLVENPG +S DGSRQGSN RRK+L+ TPSNE I SYAVLE KLS LGWERYYDDPDLLQFHKRST+HLISLPKDFSKFKSMHMFDIVVKNRN FEVRD+
Sbjct: 31 PILQGLDSPIYTLQSHHPM--YPIAKRELLAIFFQSSKSLFLSTQVRIFFLVRMSGVWVFKNGVVRLVENPGAESMDGSRQGSNIRRKVLVHTPSNEVITSYAVLERKLSSLGWERYYDDPDLLQFHKRSTVHLISLPKDFSKFKSMHMFDIVVKNRNAFEVRDM 193
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. ExPASy TrEMBL
Match: U7DYQ4_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_0034s00300g PE=4 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 5.052e-67 Identity = 97/112 (86.61%), Postives = 104/112 (92.86%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
MSGVWVFKNGVVRLVENPG +S DGSRQGSNTRRK+L+ TPSNE I SYAVLE KLS LGWERYYDDPDLLQFH RST+HLISLPKDF+KFKSMHM+DIVVKNRNMFEVRD+
Sbjct: 1 MSGVWVFKNGVVRLVENPGAESLDGSRQGSNTRRKVLVHTPSNEVITSYAVLERKLSSLGWERYYDDPDLLQFHIRSTVHLISLPKDFNKFKSMHMYDIVVKNRNMFEVRDM 112
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. ExPASy TrEMBL
Match: B9RT38_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0680830 PE=4 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 9.132e-67 Identity = 96/112 (85.71%), Postives = 103/112 (91.96%), Query Frame = 0
Query: 52 MSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
MSGVWVFKNGVVRLVENPG +S DGSRQGS RRK+L+ TPSNE I SY+VLEHKL LGWERYYDDPDLLQFHKRST+HLISLPKDFSKFKSMHM+DIVVKNRNMFEVRD+
Sbjct: 1 MSGVWVFKNGVVRLVENPGAESLDGSRQGSTARRKVLVHTPSNEIITSYSVLEHKLYSLGWERYYDDPDLLQFHKRSTVHLISLPKDFSKFKSMHMYDIVVKNRNMFEVRDM 112
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. ExPASy TrEMBL
Match: A0A1Q3C454_CEPFO (Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_18371 PE=4 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 6.835e-65 Identity = 94/117 (80.34%), Postives = 105/117 (89.74%), Query Frame = 0
Query: 47 LFDKPMSGVWVFKNGVVRLVENPGVDSFDGSRQGSNTRRKLLIDTPSNEAIASYAVLEHKLSILGWERYYDDPDLLQFHKRSTIHLISLPKDFSKFKSMHMFDIVVKNRNMFEVRDV 163
LF MSGVWVF+NGV+RL ENPG DS DGSRQGS+ RRK+L+ TPSNE I SYAVLE KLS+LGWERYYDDPDL QFHKRST+HLISLPKDF+KFKSMHM+DIVVKNRN+FEVRD+
Sbjct: 1 LFPSKMSGVWVFQNGVIRLAENPGADSVDGSRQGSSIRRKVLVHTPSNEVINSYAVLEGKLSLLGWERYYDDPDLFQFHKRSTVHLISLPKDFNKFKSMHMYDIVVKNRNVFEVRDM 117 The following BLAST results are available for this feature:
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. ExPASy Swiss-Prot
Analysis Date: 2020-01-16 (BLASTP of HGS_v1.1 Gossypium darwinii proteins vs UniProt Swissprot) Total hits: 9
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. Araport11
Analysis Date: 2020-01-16 (BLASTP of HGS_v1.1 Gossypium darwinii proteins vs arabidopsis Araport11) Total hits: 5
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. NCBI nr
Analysis Date: 2020-01-21 (BLASTP of HGS_v1.1 Gossypium darwinii proteins vs NCBI nr) Total hits: 10
BLAST of rna-gnl|WGS_VKGI|Godar.A01G031300.1 vs. ExPASy TrEMBL
Analysis Date: 2020-01-21 (BLASTP of HGS_v1.1 Gossypium darwinii proteins vs UniProt TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan Analysis for HGS_v1.1 Gossypium darwinii proteins
Date Performed: 2020-01-15
Sequences
The
following sequences are available for this feature:
protein sequence of rna-gnl|WGS_VKGI|Godar.A01G031300.1_AD5_HGS_v1.1 >rna-gnl|WGS_VKGI|Godar.A01G031300.1_AD5_HGS_v1.1 ID=rna-gnl|WGS_VKGI|Godar.A01G031300.1_AD5_HGS_v1.1; Name=rna-gnl|WGS_VKGI|Godar.A01G031300.1_AD5_HGS_v1.1; organism=Gossypium darwinii; type=polypeptide; length=163bpback to top mRNA from alignment at CM017688.1:2383449..2383940+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-gnl|WGS_VKGI|Godar.A01G031300.1_AD5_HGS_v1.1 ID=rna-gnl|WGS_VKGI|Godar.A01G031300.1_AD5_HGS_v1.1; Name=rna-gnl|WGS_VKGI|Godar.A01G031300.1; organism=Gossypium darwinii; type=mRNA; length=492bp; location=Sequence derived from: CM017688.1:2383449..2383940+ (Gossypium darwiniiback to top Coding sequence (CDS) from alignment at CM017688.1:2383449..2383940+ >rna-gnl|WGS_VKGI|Godar.A01G031300.1_AD5_HGS_v1.1 ID=rna-gnl|WGS_VKGI|Godar.A01G031300.1_AD5_HGS_v1.1; Name=rna-gnl|WGS_VKGI|Godar.A01G031300.1; organism=Gossypium darwinii; type=CDS; length=492bp; location=Sequence derived from: CM017688.1:2383449..2383940+ (Gossypium darwiniiback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|