Gh_D01G0001, Gh_D01G0001_NBI-AD1_v1.1 (mRNA) Gossypium hirsutum

Transcript Overview
NameGh_D01G0001
Unique NameGh_D01G0001_NBI-AD1_v1.1
TypemRNA
OrganismGossypium hirsutum (Upland Cotton)
Sequence length237
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:2090..2523 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
abhnL2944Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
hbhnL4272Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hbhnL4746Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
hbhnL5086Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
bhhnL2314Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
hnhnL0019Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
hnrjR0405Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
hnrbR0556Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
hjhnL0024Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
hjhnL0810Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
ghhnL0029Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
ghhnL0920Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
gbhnL0943Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
gbhnL3427Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
achnL0037Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
hnhzR0758Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
hnhzR0792Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
bzhnL0028Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
bzhnL0908Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
gkhnL0027Gossypioides kirkii genome ISU_v3Gossypioides kirkii
gtbhnL0038Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
grbhnL0030Gossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
ghzhnL0029Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghzhnL0926Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
ghthnL0023Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
ghthnL0897Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
adhnL0965Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
hgshnL0044Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hgshnL0960Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
hntoR0666Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
hntoR0692Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
gdhnL0026Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
gdhnL0944Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
fnhnL0031Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
hntwR0823Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
hnuhR0663Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
hnndmR0794Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
hnndmR0831Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
d3dhnL0744Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
barhnL0025Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
barhnL0856Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
a3hhnL0027Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum
a3hhnL0910Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum
b1jhnL0045Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
aouhnL0035Gossypium herbaceum (A1) 'Wagad' genome USDA_v1Gossypium herbaceum
gbihnL0058Gossypium bickii (G1) genome JZU_v1Gossypium bickii
gbihnL0898Gossypium bickii (G1) genome JZU_v1Gossypium bickii
gszhnL0791Gossypium stocksii (E1) genome ZSTU_v1Gossypium stocksii
gcfhnL0041Gossypium arboreum (A2) 'SXY1' genome HAU_v2Gossypium arboreum
gechnL0025Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
gechnL0895Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
grzhnL0026Gossypium raimondii (D5) 'GPD5lz' genome HAU_v1Gossypium raimondii
adshnL0027Gossypium stephensii (AD7) 'AD701' genome CRI_v1Gossypium stephensii
adshnL0870Gossypium stephensii (AD7) 'AD701' genome CRI_v1Gossypium stephensii
hnjmbR0803Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
hnjmbR0840Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
a1zhnL0040Gossypium herbaceum (A1) 'ZhongCao1' genome HAU_v1Gossypium herbaceum
a1whnL0029Gossypium herbaceum (A1) 'A1a wild' genome HAU_v1Gossypium herbaceum
b1hhnL0040Gossypium anomalum (B1) genome HAU_v1Gossypium anomalum
c1hhnL0046Gossypium sturtianum (C1) genome HAU_v1Gossypium sturtianum
e1hhnL0032Gossypium stocksii (E1) genome HAU_v1Gossypium stocksii
f1hhnL0050Gossypium longicalyx (F1) genome HAU_v1Gossypium longicalyx
g1hhnL0046Gossypium bickii (G1) genome HAU_v1Gossypium bickii
dkchnL1367Gossypium klotzschianum (D3-k) genome CRI_v1Gossypium klotzschianum
d6chnL1320Gossypium gossypioides (D6) genome CRI_v1Gossypium gossypioides
d8chnL1331Gossypium trilobum (D8) genome CRI_v1Gossypium trilobum
hnpscR0768Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
hnpscR0797Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
adyhnL0032Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
adyhnL0894Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
g2bhnL0027Gossypium barbadense (AD2) 'GB249' genome HAU_v1Gossypium barbadense
g2bhnL0897Gossypium barbadense (AD2) 'GB249' genome HAU_v1Gossypium barbadense
gbmhnL0028Gossypium barbadense (AD2) 'Gb_M210936' genome HAU_v1Gossypium barbadense
gbmhnL0858Gossypium barbadense (AD2) 'Gb_M210936' genome HAU_v1Gossypium barbadense
a5zhnL0027Gossypium barbadense (AD2) 'AZB51' genome HAU_v1Gossypium barbadense
a5zhnL0921Gossypium barbadense (AD2) 'AZB51' genome HAU_v1Gossypium barbadense
azbhnL0029Gossypium barbadense (AD2) 'AZB375' genome HAU_v1Gossypium barbadense
azbhnL0906Gossypium barbadense (AD2) 'AZB375' genome HAU_v1Gossypium barbadense
hnyumR0799Gossypium barbadense (AD2) 'Yuma' genome HAU_v1Gossypium barbadense
hnyumR0835Gossypium barbadense (AD2) 'Yuma' genome HAU_v1Gossypium barbadense
g7ihnL0032Gossypium barbadense (AD2) 'Giza7' genome HAU_v1Gossypium barbadense
g7ihnL0928Gossypium barbadense (AD2) 'Giza7' genome HAU_v1Gossypium barbadense
azkhnL0029Gossypium barbadense (AD2) 'AZK101' genome HAU_v1Gossypium barbadense
azkhnL0909Gossypium barbadense (AD2) 'AZK101' genome HAU_v1Gossypium barbadense
a3zhnL0028Gossypium barbadense (AD2) 'AZB339' genome HAU_v1Gossypium barbadense
a3zhnL0913Gossypium barbadense (AD2) 'AZB339' genome HAU_v1Gossypium barbadense
a6zhnL0767Gossypium barbadense (AD2) 'AZB634' genome HAU_v1Gossypium barbadense
a6zhnL0915Gossypium barbadense (AD2) 'AZB634' genome HAU_v1Gossypium barbadense
g6bhnL0029Gossypium barbadense (AD2) 'GB-0660' genome HAU_v1Gossypium barbadense
g6bhnL0896Gossypium barbadense (AD2) 'GB-0660' genome HAU_v1Gossypium barbadense
g7bhnL0027Gossypium barbadense (AD2) 'GB-0776' genome HAU_v1Gossypium barbadense
g7bhnL0908Gossypium barbadense (AD2) 'GB-0776' genome HAU_v1Gossypium barbadense
hnj1hR0830Gossypium barbadense (AD2) 'Junhai-1' genome HAU_v1Gossypium barbadense
ceghnL0029Gossypium barbadense (AD2) 'CEG' genome HAU_v1Gossypium barbadense
ceghnL0905Gossypium barbadense (AD2) 'CEG' genome HAU_v1Gossypium barbadense
hnhpfR0728Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
hnhpfR0759Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum

Orthologs
Gene/TranscriptAssemblySpecies
CEG.A01G000007.mRNA1Gossypium barbadense (AD2) 'CEG' genome HAU_v1Gossypium barbadense
rna-gnl|WGS:JAIQCV|GS02G_00090Gossypium stocksii (E1) genome ZSTU_v1Gossypium stocksii
Golon.001G000900-1Gossypium longicalyx (F1) genome NSF_v1Gossypium longicalyx
Gbar_D01G000040.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
GB0776.D01G000001.mRNA1Gossypium barbadense (AD2) 'GB-0776' genome HAU_v1Gossypium barbadense
GB0666.D01G000001.mRNA1Gossypium barbadense (AD2) 'GB-0660' genome HAU_v1Gossypium barbadense
GB0249.A01G000007.mRNA1Gossypium barbadense (AD2) 'GB249' genome HAU_v1Gossypium barbadense
Gbi01G2855.1Gossypium bickii (G1) genome JZU_v1Gossypium bickii
rna-gnl|WGS_VKGE|Gotom.A01G001100.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
Gano_01G000050.2Gossypium anomalum (B1) genome HAU_v1Gossypium anomalum
Glon_01G028650.1Gossypium longicalyx (F1) genome HAU_v1Gossypium longicalyx
Cotton_A_00266Gossypium arboreum (A2) 'SXY1' genome CGP-BGI_v2_a1Gossypium arboreum
JH1.D01G000001.mRNA1Gossypium barbadense (AD2) 'Junhai-1' genome HAU_v1Gossypium barbadense
GstD0101T234400.1Gossypium stephensii (AD7) 'AD701' genome CRI_v1Gossypium stephensii
Giza7.A01G000008.mRNA1Gossypium barbadense (AD2) 'Giza7' genome HAU_v1Gossypium barbadense
GstA0101T236300.1Gossypium stephensii (AD7) 'AD701' genome CRI_v1Gossypium stephensii
GB_D01G0004Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
rna-gnl|WGS_VKGI|Godar.A01G001600.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
Gbar_D01G024020.1Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1Gossypium barbadense
GB0307.A01G000004.mRNA1Gossypium barbadense (AD2) 'AZB339' genome HAU_v1Gossypium barbadense
Gklo_1G000001.mRNA1Gossypium klotzschianum (D3-k) genome CRI_v1Gossypium klotzschianum
GB0776.A01G000007.mRNA1Gossypium barbadense (AD2) 'GB-0776' genome HAU_v1Gossypium barbadense
GekA0101T000900.1Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
Gbi13G1457.1Gossypium bickii (G1) genome JZU_v1Gossypium bickii
Yuma.D01G000001.mRNA1Gossypium barbadense (AD2) 'Yuma' genome HAU_v1Gossypium barbadense
Gstu01G028720.1Gossypium sturtianum (C1) genome HAU_v1Gossypium sturtianum
CEG.D01G000001.mRNA1Gossypium barbadense (AD2) 'CEG' genome HAU_v1Gossypium barbadense
GB_A01G0004Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1Gossypium barbadense
evm.model.Goano01G2986Gossypium anomalum (B1) genome JAAS_v1.2_a1.1Gossypium anomalum
Cotton_D_gene_10018197Gossypium raimondii (D5) 'D5-3' genome BGI-CGP-draft_v1Gossypium raimondii
Gos0569850.1Gossypium barbadense (AD2) 'Gb_M210936' genome HAU_v1Gossypium barbadense
TURN.01g028410.m01Gossypium turneri (D10) genome NSF_v1_a2Gossypium turneri
K101.A01G000003.mRNA1Gossypium barbadense (AD2) 'AZK101' genome HAU_v1Gossypium barbadense
Gos0128550.1Gossypium barbadense (AD2) 'Gb_M210936' genome HAU_v1Gossypium barbadense
rna-gnl|WGS:VKDL|Gobar.D01G000100.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
GB0307.D01G000001.mRNA1Gossypium barbadense (AD2) 'AZB339' genome HAU_v1Gossypium barbadense
Gm0480690.1Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum
GB0262.D01G000001.mRNA1Gossypium barbadense (AD2) 'AZB51' genome HAU_v1Gossypium barbadense
Ggos_1G000002.mRNA1Gossypium gossypioides (D6) genome CRI_v1Gossypium gossypioides
GB0414.D01G000001.mRNA1Gossypium barbadense (AD2) 'AZB634' genome HAU_v1Gossypium barbadense
XM_012593752.2Gossypium raimondii (D5) 'GPD5lz' genome HAU_v1Gossypium raimondii
Gtri_1G000002.mRNA1Gossypium trilobum (D8) genome CRI_v1Gossypium trilobum
rna-gnl|WGS_VKGE|Gotom.D01G000800.1Gossypium tomentosum (AD3) genome HGS_v1.1Gossypium tomentosum
Gheraf_01G000060.1Gossypium herbaceum (A1) 'A1a wild' genome HAU_v1Gossypium herbaceum
GB0333.D01G000001.mRNA1Gossypium barbadense (AD2) 'AZB375' genome HAU_v1Gossypium barbadense
Gher_01G030610.1Gossypium herbaceum (A1) 'ZhongCao1' genome HAU_v1Gossypium herbaceum
GekD0101T251300.1Gossypium ekmanianum (AD6) 'AD602' genome CRI_v1Gossypium ekmanianum
Gorai.002G000700.1Gossypium raimondii (D5) genome JGI_v2_a2.1Gossypium raimondii
GB0262.A01G000006.mRNA1Gossypium barbadense (AD2) 'AZB51' genome HAU_v1Gossypium barbadense
K101.D01G000001.mRNA1Gossypium barbadense (AD2) 'AZK101' genome HAU_v1Gossypium barbadense
Kirkii_Juiced.00g000020.m01Gossypioides kirkii genome ISU_v3Gossypioides kirkii
rna-gnl|WGS:VKDL|Gobar.A01G249100.1Gossypium barbadense (AD2) '3-79' genome HGS_v1.1Gossypium barbadense
gene-E1A91_D01G000500v1-mRNA1Gossypium mustelinum (AD4) genome JGI_v1.1Gossypium mustelinum
rna-gnl|WGS_VKGI|Godar.D01G000600.1Gossypium darwinii (AD5) genome HGS_v1.1Gossypium darwinii
A1.A1_01G277600-1Gossypium herbaceum (A1) 'Wagad' genome USDA_v1Gossypium herbaceum
Yuma.A01G000007.mRNA1Gossypium barbadense (AD2) 'Yuma' genome HAU_v1Gossypium barbadense
Gsto_01G000060.1Gossypium stocksii (E1) genome HAU_v1Gossypium stocksii
EVM_prediction_Ga01G0005Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1Gossypium arboreum
EVM0001130.1Gossypium davidsonii (D3d-8) genome CRI_v1Gossypium davidsonii
Giza7.D01G000001.mRNA1Gossypium barbadense (AD2) 'Giza7' genome HAU_v1Gossypium barbadense
GB0249.D01G000002.mRNA1Gossypium barbadense (AD2) 'GB249' genome HAU_v1Gossypium barbadense
Gbscaffold23966.2.0Gossypium barbadense (AD2) '3-79' genome HAU_v1Gossypium barbadense
GB0333.A01G000005.mRNA1Gossypium barbadense (AD2) 'AZB375' genome HAU_v1Gossypium barbadense
GB0414.A13G002291.mRNA1Gossypium barbadense (AD2) 'AZB634' genome HAU_v1Gossypium barbadense
D5.v1.pred_00021656-RAGossypium raimondii (D5) 'D5-4' genome NSF_v1Gossypium raimondii
GB0666.A01G000006.mRNA1Gossypium barbadense (AD2) 'GB-0660' genome HAU_v1Gossypium barbadense
Gbic_01G000080.1Gossypium bickii (G1) genome HAU_v1Gossypium bickii
XM_017785227.2Gossypium arboreum (A2) 'SXY1' genome HAU_v2Gossypium arboreum
Gm0316640.1Gossypium tomentosum (AD3) genome HAU_v1Gossypium tomentosum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
Gohir.A01G000500.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
Gh_D01G000100.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
maker-Dt_01-snap-gene-3.443-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
maker-At_01-snap-gene-0.191-mRNA-1Gossypium hirsutum (AD1) 'Bar32' genome NSF_v1Gossypium hirsutum
Ghicr24_D01G000100.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
GhirPD0101T238400.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
GH_D01G00004_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
mk-At_01-snapG-0.191-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
GH_D01G0005Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
GhirPA0101T237500.1Gossypium hirsutum (AD1) 'TX-1000' genome CRI_v1Gossypium hirsutum
Gohir.A01G000500.1Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1Gossypium hirsutum
GH_A01G00007_HPF.1Gossypium hirsutum (AD1) 'HPF17' genome ZJU_v1Gossypium hirsutum
CotAD_60273Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
CotAD_37984Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
Gohir.D01G000200.1Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1Gossypium hirsutum
D01G00040.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
Ghicr24_A01G000700.1Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1Gossypium hirsutum
CotAD_08830Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1Gossypium hirsutum
GhM_D01G0009.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
Ghir_A01G000050.1Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1Gossypium hirsutum
Gh_A01G0003Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1Gossypium hirsutum
Ghi_D01G00001Gossypium hirsutum (AD1) 'TM-1' genome WHU_v1Gossypium hirsutum
mk-Dt_01-snapG-3.443-mRNA-1Gossypium hirsutum (AD1) 'PSC355' genome USDA_v1Gossypium hirsutum
GhM_A01G0026.1Gossypium hirsutum (AD1) 'NDM8' genome HEAU_v1Gossypium hirsutum
A01G00100.mRNA1Gossypium hirsutum (AD1) 'YM11' genome XAAS_v1Gossypium hirsutum
GH_A01G0005Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1Gossypium hirsutum
Gh_A01G000500.1Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1Gossypium hirsutum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Gh_D01G0001Gh_D01G0001_NBI-AD1_v1.1Gossypium hirsutumgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Gh_D01G0001.exon3Gh_D01G0001.exon3_NBI-AD1_v1.1Gossypium hirsutumexon
Gh_D01G0001.exon2Gh_D01G0001.exon2_NBI-AD1_v1.1Gossypium hirsutumexon
Gh_D01G0001.exon1Gh_D01G0001.exon1_NBI-AD1_v1.1Gossypium hirsutumexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
cds.Gh_D01G0001cds.Gh_D01G0001_NBI-AD1_v1.1Gossypium hirsutumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Gh_D01G0001_NBI-AD1_v1.1Gh_D01G0001_NBI-AD1_v1.1Gossypium hirsutumpolypeptide


Homology
[Close]
BLAST of Gh_D01G0001 vs. NCBI nr
Match: gi|763744671|gb|KJB12110.1| (hypothetical protein B456_002G000900 [Gossypium raimondii])

HSP 1 Score: 158.303 bits (399), Expect = 4.913e-49
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMCAEEFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLHRHPMCAEEFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS
Sbjct:    1 MHPPLTLHRHPMCAEEFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
[Close]
BLAST of Gh_D01G0001 vs. NCBI nr
Match: gi|1028944808|ref|XP_016715666.1| (PREDICTED: COX assembly mitochondrial protein 2 homolog isoform X2 [Gossypium hirsutum] >gi|1028944992|ref|XP_016715757.1| PREDICTED: COX assembly mitochondrial protein 2 homolog isoform X2 [Gossypium hirsutum] >gi|1028948463|ref|XP_016717562.1| PREDICTED: COX assembly mitochondrial protein 2 homolog isoform X2 [Gossypium hirsutum] >gi|1028948465|ref|XP_016717564.1| PREDICTED: COX assembly mitochondrial protein 2 homolog isoform X2 [Gossypium hirsutum] >gi|1028948467|ref|XP_016717565.1| PREDICTED: COX assembly mitochondrial protein 2 homolog isoform X2 [Gossypium hirsutum] >gi|1028948469|ref|XP_016717566.1| PREDICTED: COX assembly mitochondrial protein 2 homolog isoform X2 [Gossypium hirsutum] >gi|1028948471|ref|XP_016717567.1| PREDICTED: COX assembly mitochondrial protein 2 homolog isoform X2 [Gossypium hirsutum] >gi|1028948473|ref|XP_016717568.1| PREDICTED: COX assembly mitochondrial protein 2 homolog isoform X2 [Gossypium hirsutum] >gi|1028948475|ref|XP_016717569.1| PREDICTED: COX assembly mitochondrial protein 2 homolog isoform X2 [Gossypium hirsutum] >gi|1028948477|ref|XP_016717570.1| PREDICTED: COX assembly mitochondrial protein 2 homolog isoform X2 [Gossypium hirsutum])

HSP 1 Score: 153.295 bits (386), Expect = 5.465e-47
Identity = 78/81 (96.30%), Postives = 78/81 (96.30%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLHRHPMCAE   EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS
Sbjct:    1 MHPPLTLHRHPMCAEIIEEFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 81
[Close]
BLAST of Gh_D01G0001 vs. NCBI nr
Match: gi|823129580|ref|XP_012449206.1| (PREDICTED: COX assembly mitochondrial protein 2 homolog isoform X3 [Gossypium raimondii] >gi|763744669|gb|KJB12108.1| hypothetical protein B456_002G000700 [Gossypium raimondii])

HSP 1 Score: 150.984 bits (380), Expect = 4.355e-46
Identity = 77/81 (95.06%), Postives = 77/81 (95.06%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLHRHPMCAE   EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERL ALRKETAENDS
Sbjct:    1 MHPPLTLHRHPMCAEIIEEFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLHALRKETAENDS 81
[Close]
BLAST of Gh_D01G0001 vs. NCBI nr
Match: gi|1028963470|ref|XP_016725235.1| (PREDICTED: COX assembly mitochondrial protein 2 homolog [Gossypium hirsutum] >gi|1050635320|ref|XP_017640716.1| PREDICTED: COX assembly mitochondrial protein 2 homolog [Gossypium arboreum] >gi|1050639032|ref|XP_017642625.1| PREDICTED: COX assembly mitochondrial protein 2 homolog [Gossypium arboreum] >gi|1050639034|ref|XP_017642626.1| PREDICTED: COX assembly mitochondrial protein 2 homolog [Gossypium arboreum] >gi|728827994|gb|KHG07448.1| putative C16orf61 [Gossypium arboreum] >gi|728848223|gb|KHG27666.1| putative C16orf61 [Gossypium arboreum] >gi|1347688567|gb|PPR90153.1| hypothetical protein GOBAR_AA30528 [Gossypium barbadense])

HSP 1 Score: 149.443 bits (376), Expect = 1.523e-45
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLHRHPMCAE   EFQKCHLEHPI KFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAE+DS
Sbjct:    1 MHPPLTLHRHPMCAEIIEEFQKCHLEHPIAKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAESDS 81
[Close]
BLAST of Gh_D01G0001 vs. NCBI nr
Match: gi|1269876256|ref|XP_022748613.1| (COX assembly mitochondrial protein 2 homolog [Durio zibethinus] >gi|1269876258|ref|XP_022748614.1| COX assembly mitochondrial protein 2 homolog [Durio zibethinus])

HSP 1 Score: 147.902 bits (372), Expect = 7.163e-45
Identity = 74/81 (91.36%), Postives = 77/81 (95.06%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMCA---EEFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLHRHPMCA   EEFQKCHL+HPI KFFGECTELKIKLDRCFRQEKALKRKANFEQSKKL+ERLQALRKETAEN+S
Sbjct:    1 MHPPLTLHRHPMCAKIIEEFQKCHLDHPIAKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLRERLQALRKETAENNS 81
[Close]
BLAST of Gh_D01G0001 vs. NCBI nr
Match: gi|1028968961|ref|XP_016727999.1| (PREDICTED: COX assembly mitochondrial protein 2 homolog [Gossypium hirsutum])

HSP 1 Score: 147.517 bits (371), Expect = 8.446e-45
Identity = 75/81 (92.59%), Postives = 76/81 (93.83%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLHRHPMCAE   EFQKCHLEHPI KFFGECTELKIKLDRC RQEKALKRKANFEQSKKLKERLQALRKETAE+DS
Sbjct:    1 MHPPLTLHRHPMCAEIIEEFQKCHLEHPIAKFFGECTELKIKLDRCLRQEKALKRKANFEQSKKLKERLQALRKETAESDS 81
[Close]
BLAST of Gh_D01G0001 vs. NCBI nr
Match: gi|1028944806|ref|XP_016715665.1| (PREDICTED: COX assembly mitochondrial protein 2 homolog isoform X1 [Gossypium hirsutum] >gi|1028944990|ref|XP_016715756.1| PREDICTED: COX assembly mitochondrial protein 2 homolog isoform X1 [Gossypium hirsutum])

HSP 1 Score: 147.132 bits (370), Expect = 1.548e-44
Identity = 78/87 (89.66%), Postives = 78/87 (89.66%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQE------KALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLHRHPMCAE   EFQKCHLEHPITKFFGECTELKIKLDRCFRQE      KALKRKANFEQSKKLKERLQALRKETAENDS
Sbjct:    1 MHPPLTLHRHPMCAEIIEEFQKCHLEHPITKFFGECTELKIKLDRCFRQEDVFIWQKALKRKANFEQSKKLKERLQALRKETAENDS 87
[Close]
BLAST of Gh_D01G0001 vs. NCBI nr
Match: gi|1028975574|ref|XP_016731235.1| (PREDICTED: COX assembly mitochondrial protein 2 homolog [Gossypium hirsutum] >gi|1028975576|ref|XP_016731236.1| PREDICTED: COX assembly mitochondrial protein 2 homolog [Gossypium hirsutum])

HSP 1 Score: 145.976 bits (367), Expect = 4.243e-44
Identity = 74/81 (91.36%), Postives = 77/81 (95.06%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLHR+PMCAE   EFQKCHLEHPI KFFGECTELKIKLDRCF+QEKALKRKANFEQSKKLKERLQALRKETAE+DS
Sbjct:    1 MHPPLTLHRNPMCAEIIEEFQKCHLEHPIAKFFGECTELKIKLDRCFQQEKALKRKANFEQSKKLKERLQALRKETAESDS 81
[Close]
BLAST of Gh_D01G0001 vs. NCBI nr
Match: gi|590682981|ref|XP_007041487.1| (PREDICTED: COX assembly mitochondrial protein 2 homolog [Theobroma cacao] >gi|508705422|gb|EOX97318.1| Cytochrome c oxidase biogenesis protein Cmc1-like isoform 1 [Theobroma cacao])

HSP 1 Score: 144.821 bits (364), Expect = 9.051e-44
Identity = 73/81 (90.12%), Postives = 76/81 (93.83%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLHRHPMCAE   +FQKCH +HPI KFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAEN+S
Sbjct:    1 MHPPLTLHRHPMCAEIIEQFQKCHSDHPIAKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENES 81
[Close]
BLAST of Gh_D01G0001 vs. NCBI nr
Match: gi|1204907603|ref|XP_021286176.1| (COX assembly mitochondrial protein 2 homolog [Herrania umbratica])

HSP 1 Score: 144.05 bits (362), Expect = 2.379e-43
Identity = 72/81 (88.89%), Postives = 76/81 (93.83%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLHRHPMCAE   +FQKCH +HPI KFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETA+N+S
Sbjct:    1 MHPPLTLHRHPMCAEIIEQFQKCHSDHPIAKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAQNES 81
[Close]
BLAST of Gh_D01G0001 vs. Soybase Glyma v1.0
Match: pacid=30557267 (transcript=Glyma.18G045400.1 locus=Glyma.18G045400 ID=Glyma.18G045400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1)

HSP 1 Score: 131.724 bits (330), Expect = 2.189e-31
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLH+HPMCAE   +FQKCH+EHPI KFFGECT+LKIKLDRCFR+EKALKRKANFE+SKKLKE+L+ALRKE A +  
Sbjct:    1 MHPPLTLHKHPMCAEIIEQFQKCHIEHPIAKFFGECTDLKIKLDRCFREEKALKRKANFEESKKLKEQLRALRKENAASSG 81
[Close]
BLAST of Gh_D01G0001 vs. Soybase Glyma v1.0
Match: pacid=30557266 (transcript=Glyma.18G045400.2 locus=Glyma.18G045400 ID=Glyma.18G045400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1)

HSP 1 Score: 131.724 bits (330), Expect = 2.189e-31
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLH+HPMCAE   +FQKCH+EHPI KFFGECT+LKIKLDRCFR+EKALKRKANFE+SKKLKE+L+ALRKE A +  
Sbjct:    1 MHPPLTLHKHPMCAEIIEQFQKCHIEHPIAKFFGECTDLKIKLDRCFREEKALKRKANFEESKKLKEQLRALRKENAASSG 81
[Close]
BLAST of Gh_D01G0001 vs. Soybase Glyma v1.0
Match: pacid=30530355 (transcript=Glyma.11G208400.6 locus=Glyma.11G208400 ID=Glyma.11G208400.6.Wm82.a2.v1 annot-version=Wm82.a2.v1)

HSP 1 Score: 131.724 bits (330), Expect = 2.301e-31
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLH+HPMCAE   +FQKCH+EHPI KFFGECT+LKIKLDRCFR+EKALKRKANFE+SKKLKE+L+ALRKE A +  
Sbjct:    1 MHPPLTLHKHPMCAEIIEQFQKCHIEHPIAKFFGECTDLKIKLDRCFREEKALKRKANFEESKKLKEQLRALRKENATSSG 81
[Close]
BLAST of Gh_D01G0001 vs. Soybase Glyma v1.0
Match: pacid=30530354 (transcript=Glyma.11G208400.8 locus=Glyma.11G208400 ID=Glyma.11G208400.8.Wm82.a2.v1 annot-version=Wm82.a2.v1)

HSP 1 Score: 131.724 bits (330), Expect = 2.301e-31
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLH+HPMCAE   +FQKCH+EHPI KFFGECT+LKIKLDRCFR+EKALKRKANFE+SKKLKE+L+ALRKE A +  
Sbjct:    1 MHPPLTLHKHPMCAEIIEQFQKCHIEHPIAKFFGECTDLKIKLDRCFREEKALKRKANFEESKKLKEQLRALRKENATSSG 81
[Close]
BLAST of Gh_D01G0001 vs. Soybase Glyma v1.0
Match: pacid=30530353 (transcript=Glyma.11G208400.7 locus=Glyma.11G208400 ID=Glyma.11G208400.7.Wm82.a2.v1 annot-version=Wm82.a2.v1)

HSP 1 Score: 131.724 bits (330), Expect = 2.301e-31
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLH+HPMCAE   +FQKCH+EHPI KFFGECT+LKIKLDRCFR+EKALKRKANFE+SKKLKE+L+ALRKE A +  
Sbjct:    1 MHPPLTLHKHPMCAEIIEQFQKCHIEHPIAKFFGECTDLKIKLDRCFREEKALKRKANFEESKKLKEQLRALRKENATSSG 81
[Close]
BLAST of Gh_D01G0001 vs. Soybase Glyma v1.0
Match: pacid=30530352 (transcript=Glyma.11G208400.5 locus=Glyma.11G208400 ID=Glyma.11G208400.5.Wm82.a2.v1 annot-version=Wm82.a2.v1)

HSP 1 Score: 131.724 bits (330), Expect = 2.301e-31
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLH+HPMCAE   +FQKCH+EHPI KFFGECT+LKIKLDRCFR+EKALKRKANFE+SKKLKE+L+ALRKE A +  
Sbjct:    1 MHPPLTLHKHPMCAEIIEQFQKCHIEHPIAKFFGECTDLKIKLDRCFREEKALKRKANFEESKKLKEQLRALRKENATSSG 81
[Close]
BLAST of Gh_D01G0001 vs. Soybase Glyma v1.0
Match: pacid=30530351 (transcript=Glyma.11G208400.2 locus=Glyma.11G208400 ID=Glyma.11G208400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1)

HSP 1 Score: 131.724 bits (330), Expect = 2.301e-31
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLH+HPMCAE   +FQKCH+EHPI KFFGECT+LKIKLDRCFR+EKALKRKANFE+SKKLKE+L+ALRKE A +  
Sbjct:    1 MHPPLTLHKHPMCAEIIEQFQKCHIEHPIAKFFGECTDLKIKLDRCFREEKALKRKANFEESKKLKEQLRALRKENATSSG 81
[Close]
BLAST of Gh_D01G0001 vs. Soybase Glyma v1.0
Match: pacid=30530350 (transcript=Glyma.11G208400.3 locus=Glyma.11G208400 ID=Glyma.11G208400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1)

HSP 1 Score: 131.724 bits (330), Expect = 2.301e-31
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLH+HPMCAE   +FQKCH+EHPI KFFGECT+LKIKLDRCFR+EKALKRKANFE+SKKLKE+L+ALRKE A +  
Sbjct:    1 MHPPLTLHKHPMCAEIIEQFQKCHIEHPIAKFFGECTDLKIKLDRCFREEKALKRKANFEESKKLKEQLRALRKENATSSG 81
[Close]
BLAST of Gh_D01G0001 vs. Soybase Glyma v1.0
Match: pacid=30530349 (transcript=Glyma.11G208400.1 locus=Glyma.11G208400 ID=Glyma.11G208400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1)

HSP 1 Score: 131.724 bits (330), Expect = 2.301e-31
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLH+HPMCAE   +FQKCH+EHPI KFFGECT+LKIKLDRCFR+EKALKRKANFE+SKKLKE+L+ALRKE A +  
Sbjct:    1 MHPPLTLHKHPMCAEIIEQFQKCHIEHPIAKFFGECTDLKIKLDRCFREEKALKRKANFEESKKLKEQLRALRKENATSSG 81
[Close]
BLAST of Gh_D01G0001 vs. Soybase Glyma v1.0
Match: pacid=30530348 (transcript=Glyma.11G208400.4 locus=Glyma.11G208400 ID=Glyma.11G208400.4.Wm82.a2.v1 annot-version=Wm82.a2.v1)

HSP 1 Score: 131.724 bits (330), Expect = 2.301e-31
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLH+HPMCAE   +FQKCH+EHPI KFFGECT+LKIKLDRCFR+EKALKRKANFE+SKKLKE+L+ALRKE A +  
Sbjct:    1 MHPPLTLHKHPMCAEIIEQFQKCHIEHPIAKFFGECTDLKIKLDRCFREEKALKRKANFEESKKLKEQLRALRKENATSSG 81
[Close]
BLAST of Gh_D01G0001 vs. Vitis vinifera
Match: pacid=17831754 (transcript=GSVIVT01023198001 locus=GSVIVG01023198001 ID=GSVIVT01023198001.Genoscope12X annot-version=Genoscope.12X)

HSP 1 Score: 122.865 bits (307), Expect = 2.708e-29
Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLT+++HPMCAE    FQKCH +HP+ KFFGECTELKIKLDRCFRQEK +KRK N E+S+KL+E LQA RKETAE  +
Sbjct:    1 MHPPLTIYKHPMCAEIIKAFQKCHSDHPVGKFFGECTELKIKLDRCFRQEKVVKRKKNLEKSRKLRETLQAYRKETAEGGN 81
[Close]
BLAST of Gh_D01G0001 vs. Cacao Genome Database
Match: pacid=27464478 (transcript=Thecc1EG006383t1 locus=Thecc1EG006383 ID=Thecc1EG006383t1.CGDv1.1 annot-version=v1.1)

HSP 1 Score: 144.821 bits (364), Expect = 1.078e-35
Identity = 73/81 (90.12%), Postives = 76/81 (93.83%), Query Frame = 1 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLHRHPMCAE   +FQKCH +HPI KFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAEN+S
Sbjct:    1 MHPPLTLHRHPMCAEIIEQFQKCHSDHPIAKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENES 81
[Close]
BLAST of Gh_D01G0001 vs. Cacao Genome Database
Match: pacid=27464479 (transcript=Thecc1EG006383t2 locus=Thecc1EG006383 ID=Thecc1EG006383t2.CGDv1.1 annot-version=v1.1)

HSP 1 Score: 129.028 bits (323), Expect = 7.116e-31
Identity = 68/79 (86.08%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQE----KALKRKANFEQSKKLKERLQALRKE 72
            MHPPLTLHRHPMCAE   +FQKCH +HPI KFFGECTELKIKLDRCFRQE    KALKRKANFEQSKKLKERLQALRKE
Sbjct:    1 MHPPLTLHRHPMCAEIIEQFQKCHSDHPIAKFFGECTELKIKLDRCFRQEVSLLKALKRKANFEQSKKLKERLQALRKE 79
[Close]
BLAST of Gh_D01G0001 vs. Rice Genome Annotation Project
Match: protein|expressed (protein)

HSP 1 Score: 129.028 bits (323), Expect = 9.729e-31
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAEND 77
            MHPPLTLHRHPMCAE   EFQKCHL+HP+ KFFGECT+LKIKLDRCFRQEKALKRKANFE+SKK KE+L A ++E AE +
Sbjct:    1 MHPPLTLHRHPMCAEIIEEFQKCHLDHPVKKFFGECTDLKIKLDRCFRQEKALKRKANFEESKKFKEQLLAYKREIAETN 80
[Close]
BLAST of Gh_D01G0001 vs. Rice Genome Annotation Project
Match: protein|expressed (protein)

HSP 1 Score: 129.028 bits (323), Expect = 9.729e-31
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAEND 77
            MHPPLTLHRHPMCAE   EFQKCHL+HP+ KFFGECT+LKIKLDRCFRQEKALKRKANFE+SKK KE+L A ++E AE +
Sbjct:    1 MHPPLTLHRHPMCAEIIEEFQKCHLDHPVKKFFGECTDLKIKLDRCFRQEKALKRKANFEESKKFKEQLLAYKREIAETN 80
[Close]
BLAST of Gh_D01G0001 vs. Populus trichicarpa v2.0
Match: pacid=26990732 (transcript=Potri.004G227500.1 locus=Potri.004G227500 ID=Potri.004G227500.1.v3.0 annot-version=v3.0)

HSP 1 Score: 137.887 bits (346), Expect = 1.405e-33
Identity = 68/80 (85.00%), Postives = 72/80 (90.00%), Query Frame = 1 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAEND 77
            MHPPLTLHRHPMC E   +FQKCHL+HPI KFFGECTELKIKLDRCFR+EKA+KRKANFEQSKKLKERLQALRKE AE  
Sbjct:    1 MHPPLTLHRHPMCVEIIEQFQKCHLDHPIAKFFGECTELKIKLDRCFREEKAVKRKANFEQSKKLKERLQALRKEAAEGS 80
[Close]
BLAST of Gh_D01G0001 vs. ExPASy TrEMBL
Match: A0A0D2QXZ2_GOSRA (COX assembly mitochondrial protein OS=Gossypium raimondii OX=29730 GN=B456_002G000900 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.127e-49
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMCAEEFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLHRHPMCAEEFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS
Sbjct:    1 MHPPLTLHRHPMCAEEFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
[Close]
BLAST of Gh_D01G0001 vs. ExPASy TrEMBL
Match: A0A1U8LVW1_GOSHI (COX assembly mitochondrial protein OS=Gossypium hirsutum OX=3635 GN=LOC107930412 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.591e-47
Identity = 78/81 (96.30%), Postives = 78/81 (96.30%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLHRHPMCAE   EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS
Sbjct:    1 MHPPLTLHRHPMCAEIIEEFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 81
[Close]
BLAST of Gh_D01G0001 vs. ExPASy TrEMBL
Match: A0A0D2NG26_GOSRA (COX assembly mitochondrial protein OS=Gossypium raimondii OX=29730 GN=B456_002G000700 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.658e-46
Identity = 77/81 (95.06%), Postives = 77/81 (95.06%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLHRHPMCAE   EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERL ALRKETAENDS
Sbjct:    1 MHPPLTLHRHPMCAEIIEEFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLHALRKETAENDS 81
[Close]
BLAST of Gh_D01G0001 vs. ExPASy TrEMBL
Match: A0A2P5WGD4_GOSBA (COX assembly mitochondrial protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA30528 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.279e-45
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLHRHPMCAE   EFQKCHLEHPI KFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAE+DS
Sbjct:    1 MHPPLTLHRHPMCAEIIEEFQKCHLEHPIAKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAESDS 81
[Close]
BLAST of Gh_D01G0001 vs. ExPASy TrEMBL
Match: A0A1U8MEN8_GOSHI (COX assembly mitochondrial protein OS=Gossypium hirsutum OX=3635 GN=LOC107936957 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.279e-45
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLHRHPMCAE   EFQKCHLEHPI KFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAE+DS
Sbjct:    1 MHPPLTLHRHPMCAEIIEEFQKCHLEHPIAKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAESDS 81
[Close]
BLAST of Gh_D01G0001 vs. ExPASy TrEMBL
Match: A0A0B0MZA9_GOSAR (COX assembly mitochondrial protein OS=Gossypium arboreum OX=29729 GN=F383_34011 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.279e-45
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLHRHPMCAE   EFQKCHLEHPI KFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAE+DS
Sbjct:    1 MHPPLTLHRHPMCAEIIEEFQKCHLEHPIAKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAESDS 81
[Close]
BLAST of Gh_D01G0001 vs. ExPASy TrEMBL
Match: A0A1U8MR54_GOSHI (COX assembly mitochondrial protein OS=Gossypium hirsutum OX=3635 GN=LOC107939218 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.095e-45
Identity = 75/81 (92.59%), Postives = 76/81 (93.83%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLHRHPMCAE   EFQKCHLEHPI KFFGECTELKIKLDRC RQEKALKRKANFEQSKKLKERLQALRKETAE+DS
Sbjct:    1 MHPPLTLHRHPMCAEIIEEFQKCHLEHPIAKFFGECTELKIKLDRCLRQEKALKRKANFEQSKKLKERLQALRKETAESDS 81
[Close]
BLAST of Gh_D01G0001 vs. ExPASy TrEMBL
Match: A0A1U8LMC3_GOSHI (COX assembly mitochondrial protein OS=Gossypium hirsutum OX=3635 GN=LOC107928953 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.300e-44
Identity = 78/87 (89.66%), Postives = 78/87 (89.66%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQE------KALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLHRHPMCAE   EFQKCHLEHPITKFFGECTELKIKLDRCFRQE      KALKRKANFEQSKKLKERLQALRKETAENDS
Sbjct:    1 MHPPLTLHRHPMCAEIIEEFQKCHLEHPITKFFGECTELKIKLDRCFRQEDVFIWQKALKRKANFEQSKKLKERLQALRKETAENDS 87
[Close]
BLAST of Gh_D01G0001 vs. ExPASy TrEMBL
Match: A0A1U8MWP8_GOSHI (COX assembly mitochondrial protein OS=Gossypium hirsutum OX=3635 GN=LOC107942097 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.564e-44
Identity = 74/81 (91.36%), Postives = 77/81 (95.06%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLHR+PMCAE   EFQKCHLEHPI KFFGECTELKIKLDRCF+QEKALKRKANFEQSKKLKERLQALRKETAE+DS
Sbjct:    1 MHPPLTLHRNPMCAEIIEEFQKCHLEHPIAKFFGECTELKIKLDRCFQQEKALKRKANFEQSKKLKERLQALRKETAESDS 81
[Close]
BLAST of Gh_D01G0001 vs. ExPASy TrEMBL
Match: A0A061E4Y0_THECC (COX assembly mitochondrial protein OS=Theobroma cacao OX=3641 GN=TCM_006383 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 7.604e-44
Identity = 73/81 (90.12%), Postives = 76/81 (93.83%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMCAE---EFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENDS 78
            MHPPLTLHRHPMCAE   +FQKCH +HPI KFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAEN+S
Sbjct:    1 MHPPLTLHRHPMCAEIIEQFQKCHSDHPIAKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRKETAENES 81
[Close]
BLAST of Gh_D01G0001 vs. Araport11
Match: AT4G21192.2 (| Cytochrome c oxidase biogenesis protein Cmc1-like protein | Chr4:11294563-11295192 FORWARD LENGTH=80 | 201606)

HSP 1 Score: 127.102 bits (318), Expect = 4.545e-40
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMC---AEEFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRK-ETAEN 76
            MHPPLT HRHPMC    EEFQKCH++HPI KFFGECTELK+KLDRCFRQEKA+KRK NFEQSKKL+ERL+A+RK ETAE 
Sbjct:    1 MHPPLTPHRHPMCLEIIEEFQKCHIDHPIGKFFGECTELKVKLDRCFRQEKAVKRKVNFEQSKKLQERLKAIRKEETAET 80
[Close]
BLAST of Gh_D01G0001 vs. Araport11
Match: AT4G21192.1 (| Cytochrome c oxidase biogenesis protein Cmc1-like protein | Chr4:11294563-11295192 FORWARD LENGTH=80 | 201606)

HSP 1 Score: 127.102 bits (318), Expect = 4.545e-40
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 0 
Query:    1 MHPPLTLHRHPMC---AEEFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFEQSKKLKERLQALRK-ETAEN 76
            MHPPLT HRHPMC    EEFQKCH++HPI KFFGECTELK+KLDRCFRQEKA+KRK NFEQSKKL+ERL+A+RK ETAE 
Sbjct:    1 MHPPLTPHRHPMCLEIIEEFQKCHIDHPIGKFFGECTELKVKLDRCFRQEKAVKRKVNFEQSKKLQERLKAIRKEETAET 80
The following BLAST results are available for this feature:
BLAST of Gh_D01G0001 vs. NCBI nr
Analysis Date: 2019-05-23 (BLASTp of NBI-NAU AD1 genome protein v1.1 vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|763744671|gb|KJB12110.1|4.913e-49100.00hypothetical protein B456_002G000900 [Gossypium ra... [more]
gi|1028944808|ref|XP_016715666.1|5.465e-4796.30PREDICTED: COX assembly mitochondrial protein 2 ho... [more]
gi|823129580|ref|XP_012449206.1|4.355e-4695.06PREDICTED: COX assembly mitochondrial protein 2 ho... [more]
gi|1028963470|ref|XP_016725235.1|1.523e-4593.83PREDICTED: COX assembly mitochondrial protein 2 ho... [more]
gi|1269876256|ref|XP_022748613.1|7.163e-4591.36COX assembly mitochondrial protein 2 homolog [Duri... [more]
gi|1028968961|ref|XP_016727999.1|8.446e-4592.59PREDICTED: COX assembly mitochondrial protein 2 ho... [more]
gi|1028944806|ref|XP_016715665.1|1.548e-4489.66PREDICTED: COX assembly mitochondrial protein 2 ho... [more]
gi|1028975574|ref|XP_016731235.1|4.243e-4491.36PREDICTED: COX assembly mitochondrial protein 2 ho... [more]
gi|590682981|ref|XP_007041487.1|9.051e-4490.12PREDICTED: COX assembly mitochondrial protein 2 ho... [more]
gi|1204907603|ref|XP_021286176.1|2.379e-4388.89COX assembly mitochondrial protein 2 homolog [Herr... [more]
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BLAST of Gh_D01G0001 vs. Soybase Glyma v1.0
Analysis Date: 2015-11-24 (BLASTp of NBI-NAU AD1 genome protein v1.1 vs Soybase Glyma)
Total hits: 10
Match NameE-valueIdentityDescription
pacid=305572672.189e-3179.01transcript=Glyma.18G045400.1 locus=Glyma.18G045400... [more]
pacid=305572662.189e-3179.01transcript=Glyma.18G045400.2 locus=Glyma.18G045400... [more]
pacid=305303552.301e-3179.01transcript=Glyma.11G208400.6 locus=Glyma.11G208400... [more]
pacid=305303542.301e-3179.01transcript=Glyma.11G208400.8 locus=Glyma.11G208400... [more]
pacid=305303532.301e-3179.01transcript=Glyma.11G208400.7 locus=Glyma.11G208400... [more]
pacid=305303522.301e-3179.01transcript=Glyma.11G208400.5 locus=Glyma.11G208400... [more]
pacid=305303512.301e-3179.01transcript=Glyma.11G208400.2 locus=Glyma.11G208400... [more]
pacid=305303502.301e-3179.01transcript=Glyma.11G208400.3 locus=Glyma.11G208400... [more]
pacid=305303492.301e-3179.01transcript=Glyma.11G208400.1 locus=Glyma.11G208400... [more]
pacid=305303482.301e-3179.01transcript=Glyma.11G208400.4 locus=Glyma.11G208400... [more]
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BLAST of Gh_D01G0001 vs. Vitis vinifera
Analysis Date: 2015-11-24 (BLASTp of NBI-NAU AD1 genome protein v1.1 vs Vitis vinifera Genome)
Total hits: 1
Match NameE-valueIdentityDescription
pacid=178317542.708e-2971.60transcript=GSVIVT01023198001 locus=GSVIVG010231980... [more]
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BLAST of Gh_D01G0001 vs. Cacao Genome Database
Analysis Date: 2015-11-24 (BLASTp of NBI-NAU AD1 genome protein v1.1 vs Cacao)
Total hits: 2
Match NameE-valueIdentityDescription
pacid=274644781.078e-3590.12transcript=Thecc1EG006383t1 locus=Thecc1EG006383 I... [more]
pacid=274644797.116e-3186.08transcript=Thecc1EG006383t2 locus=Thecc1EG006383 I... [more]
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BLAST of Gh_D01G0001 vs. Rice Genome Annotation Project
Analysis Date: 2015-11-24 (BLASTp of NBI-NAU AD1 genome protein v1.1 vs Oryza sativa)
Total hits: 2
Match NameE-valueIdentityDescription
protein|expressed9.729e-3178.75protein[more]
protein|expressed9.729e-3178.75protein[more]
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BLAST of Gh_D01G0001 vs. Populus trichicarpa v2.0
Analysis Date: 2015-11-24 (BLASTp of NBI-NAU AD1 genome protein v1.1 vs Populus Genome)
Total hits: 1
Match NameE-valueIdentityDescription
pacid=269907321.405e-3385.00transcript=Potri.004G227500.1 locus=Potri.004G2275... [more]
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BLAST of Gh_D01G0001 vs. ExPASy TrEMBL
Analysis Date: 2019-06-06 (BLASTp of NBI-NAU AD1 genome protein v1.1 vs Uniprot TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2QXZ2_GOSRA4.127e-49100.00COX assembly mitochondrial protein OS=Gossypium ra... [more]
A0A1U8LVW1_GOSHI4.591e-4796.30COX assembly mitochondrial protein OS=Gossypium hi... [more]
A0A0D2NG26_GOSRA3.658e-4695.06COX assembly mitochondrial protein OS=Gossypium ra... [more]
A0A2P5WGD4_GOSBA1.279e-4593.83COX assembly mitochondrial protein OS=Gossypium ba... [more]
A0A1U8MEN8_GOSHI1.279e-4593.83COX assembly mitochondrial protein OS=Gossypium hi... [more]
A0A0B0MZA9_GOSAR1.279e-4593.83COX assembly mitochondrial protein OS=Gossypium ar... [more]
A0A1U8MR54_GOSHI7.095e-4592.59COX assembly mitochondrial protein OS=Gossypium hi... [more]
A0A1U8LMC3_GOSHI1.300e-4489.66COX assembly mitochondrial protein OS=Gossypium hi... [more]
A0A1U8MWP8_GOSHI3.564e-4491.36COX assembly mitochondrial protein OS=Gossypium hi... [more]
A0A061E4Y0_THECC7.604e-4490.12COX assembly mitochondrial protein OS=Theobroma ca... [more]

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BLAST of Gh_D01G0001 vs. Araport11
Analysis Date: 2019-06-06 (BLASTp of NBI-NAU AD1 genome protein v1.1 vs Araport11)
Total hits: 2
Match NameE-valueIdentityDescription
AT4G21192.24.545e-4080.00| Cytochrome c oxidase biogenesis protein Cmc1-lik... [more]
AT4G21192.14.545e-4080.00| Cytochrome c oxidase biogenesis protein Cmc1-lik... [more]
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BLAST of Gh_D01G0001 vs. ExPASy Swiss-Prot
Analysis Date: 2019-06-06 (BLASTp of NBI-NAU AD1 genome protein v1.1 vs Uniprot Swiss-Prot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis of Gossypium hirsutum AD1 genome protein v1.1 (NBI-NAU)
Date Performed: 2015-09-21
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 52..73
NoneNo IPR availablePANTHERPTHR22977UPF0287 FAMILYcoord: 1..72
NoneNo IPR availablePANTHERPTHR22977:SF1COX ASSEMBLY MITOCHONDRIAL PROTEIN 2 HOMOLOGcoord: 1..72
IPR013892Cytochrome c oxidase biogenesis protein Cmc1-likePFAMPF08583Cmc1coord: 1..67
e-value: 2.3E-10
score: 39.9

Sequences
The following sequences are available for this feature:

mRNA sequence

>Gh_D01G0001_NBI-AD1_v1.1 ID=Gh_D01G0001_NBI-AD1_v1.1; Name=Gh_D01G0001; organism=Gossypium hirsutum; type=mRNA; length=237bp
ATGCACCCTCCTCTGACTTTACACAGGCATCCTATGTGTGCTGAAGAATT
CCAAAAGTGTCATTTAGAGCATCCAATAACTAAATTCTTCGGTGAATGTA
CAGAATTAAAGATAAAGCTCGATCGCTGTTTCCGACAGGAAAAAGCTTTG
AAGAGGAAGGCCAATTTTGAACAGAGTAAGAAACTGAAAGAAAGACTTCA
GGCGTTAAGGAAGGAAACTGCTGAAAACGATTCATGA
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protein sequence of Gh_D01G0001_NBI-AD1_v1.1

>Gh_D01G0001_NBI-AD1_v1.1 ID=Gh_D01G0001_NBI-AD1_v1.1; Name=Gh_D01G0001_NBI-AD1_v1.1; organism=Gossypium hirsutum; type=polypeptide; length=78bp
MHPPLTLHRHPMCAEEFQKCHLEHPITKFFGECTELKIKLDRCFRQEKAL
KRKANFEQSKKLKERLQALRKETAENDS
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mRNA from alignment at D01:2090..2523-

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gh_D01G0001_NBI-AD1_v1.1 ID=Gh_D01G0001_NBI-AD1_v1.1; Name=Gh_D01G0001; organism=Gossypium hirsutum; type=mRNA; length=434bp; location=Sequence derived from: D01:2090..2523- (Gossypium hirsutum
ATGCACCCTCCTCTGACTTTACACAGGCATCCTATGTGTGCTGAAGTAAG
TACAAACTTGGTGTTGAATCTAATATTTTTAGCTGTTGGATTGGAAGGAA
AGTTTGGTTCTTGTTAAATTAATCATATGACTTTATCTTTTGGCAAATCA
TCGAGGAATTCCAAAAGTGTCATTTAGAGCATCCAATAACTAAATTCTTC
GGTGAATGTACAGAATTAAAGATAAAGCTCGATCGCTGTTTCCGACAGGA
AGTGAGTTATTCTCAGCTCTAGGGGGAAATTCAGTTTTTAGTATCATTGT
CGTGACTCTGTTTGAAACACGAAGTTTTTATTTGGCAGAAAGCTTTGAAG
AGGAAGGCCAATTTTGAACAGAGTAAGAAACTGAAAGAAAGACTTCAGGC
GTTAAGGAAGGAAACTGCTGAAAACGATTCATGA
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Coding sequence (CDS) from alignment at D01:2090..2523-

>Gh_D01G0001_NBI-AD1_v1.1 ID=Gh_D01G0001_NBI-AD1_v1.1; Name=Gh_D01G0001; organism=Gossypium hirsutum; type=CDS; length=237bp; location=Sequence derived from: D01:2090..2523- (Gossypium hirsutum
ATGCACCCTCCTCTGACTTTACACAGGCATCCTATGTGTGCTGAAGAATT
CCAAAAGTGTCATTTAGAGCATCCAATAACTAAATTCTTCGGTGAATGTA
CAGAATTAAAGATAAAGCTCGATCGCTGTTTCCGACAGGAAAAAGCTTTG
AAGAGGAAGGCCAATTTTGAACAGAGTAAGAAACTGAAAGAAAGACTTCA
GGCGTTAAGGAAGGAAACTGCTGAAAACGATTCATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR013892Cyt_c_biogenesis_Cmc1-like
Vocabulary: KEGG ORTHOLOGY
TermDefinition
K18172CMC2; COX assembly mitochondrial protein 2