HAU2631, HAU2631 (genetic_marker) gossypium spp

Marker Overview
NameHAU2631
Genbank IDES831321
TypeSSR
SpeciesGossypium spp.
Source SequenceES831321.1
Source TypeEST
Repeat Motif(AGA)9
PCR ConditionAnnealing temperature: 56.2
Primer 1HAU2631_F: CACGAGGCTTCCTGGGCTTT
Primer 2HAU2631_R: ACCAATCCCCACACTGCTCA
Product Length303
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankES831321
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
A13chromosomeA13:2547002..2547299 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018214.1chromosomeCM018214.1:2180136..2180427 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D10_13chromosomeD10_13:1671772..1672070 -Gossypium turneri (D10) genome NSF_v1_a2
CM016618.1chromosomeCM016618.1:94703160..94703450 +Gossypium australe (G2) genome CRI_v1.1
At_chr5chromosomeAt_chr5:12309602..12309899 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A13chromosomeA13:2156600..2156897 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A13chromosomeGhir_A13:2198106..2198403 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A13chromosomeA13:2312595..2312892 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A13chromosomeA13:2226525..2226822 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
scaffold59supercontigscaffold59:83351..83642 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_A13chromosomeGbar_A13:2240459..2240750 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A13chromosomeA13:2200575..2200866 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017622.1chromosomeCM017622.1:2371701..2371992 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017648.1chromosomeCM017648.1:2255285..2255582 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017700.1chromosomeCM017700.1:2024537..2024828 -Gossypium darwinii (AD5) genome HGS_v1.1
A13chromosomeA13:2442368..2442664 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr13chromosomeChr13:2345757..2346051 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr13chromosomeChr13:2245450..2245789 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
B_13chromosomeB_13:92875100..92875387 +Gossypium anomalum (B1) genome NSF_v1
Chr13chromosomeChr13:1960295..1960591 -Gossypium davidsonii (D3d-8) genome CRI_v1
Chr13chromosomeChr13:1335270..1335566 -Gossypium gossypioides (D6) genome ISU_v1
Chr05chromosomeChr05:113189625..113189922 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
ES831321.1ES831321.1Gossypium spp.sequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch13_At.13N/A176.28HAU2631bView
2Emian-22 x 3-79, BC1 (2011)AD_ch18_Dt.13N/A126.02HAU2631aView
3Yumian-1 x T586, RIL (2015)AD_ch18_Dt.13N/A14.1HAU2631View
4Yumian-1 x 7235, RIL (2015)AD_ch10_At.10N/A93.4HAU2631View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch13_At.13N/A136.2HAU2631View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch18_Dt.13N/A4.1HAU2631View
7TM-1 x Hai-7124, BC1 (2012)AD_ch18_Dt.13N/A2HAU2631-350View
Sequence
>HAU2631 ID=HAU2631; Name=HAU2631; organism=Gossypium spp.; type=genetic_marker; length=303bp
CACGAGGCTTCCTGGGCTTTTTCATTTTTGTGTTTTGTGAAGATTAAGAC
CTCTCAGTGAATCTTTTTGTTCTTCTTCATTCTTCTTTTTTTCTTGGGGT
TTTCACTTGTTTCTTGTACTAATGAAGTGATATTTTCAACTAATTCATTG
ATGGTAACTTTTCCCCCAAAGAAGATTTTTTTTATTTATTTTTGAGGGAA
AGTTGAAGAATTTTTAGTTTAGTTTTGTAATGTAAAATTAGAAGAAGAAG
AAGAAGAAGAAGAAGAGGAAGATATGAAATCATTGAGCAGTGTGGGGATT
GGT