HAU0789, HAU0789 (genetic_marker) gossypium spp

Marker Overview
NameHAU0789
Genbank IDCO099567
TypeSSR
SpeciesGossypium spp.
Source SequenceCO099567
Source TypeEST
Repeat Motif(AT)9
PCR ConditionAnnealing temperature: 57.1
Primer 1HAU0789_F: AGTTGTATGTGTGTGTGTGTGTG
Primer 2HAU0789_R: GAGCCAAGTTCCAAAACAAC
Product Length146
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO099567
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:289624..289757 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:343100..343233 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:231643..231788 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_13chromosomeD10_13:248608..248753 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:97088836..97088983 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1263.1supercontigscaffold1263.1:267178..267311 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:250229..250362 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:248769..248902 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:84100..84233 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:250629..250762 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:255845..255978 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:271912..272045 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At13chromosomeAt13:91668..91801 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold20501supercontigscaffold20501:307941..308074 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold18152supercontigscaffold18152:91668..91801 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:91654..91787 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:265754..265887 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:270816..270949 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:241755..241888 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:319681..319814 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:246089..246222 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:295890..296023 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:227720..227865 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:752528..752663 -Gossypium anomalum (B1) genome NSF_v1n/a
chr13chromosomechr13:253019..253156 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:258275..258411 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:272854..272987 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:198160..198299 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:217843..218114 -Gossypium lobatum (D7) genome ISU_v1n/a
F13chromosomeF13:287797..287939 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:115036940..115037083 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr13chromosomeHAU0789:1..794 .
Chr13:227120..227913 -		n/a
Chr13chromosomeHAU0789:1..794 .
Chr13:42904875..42905668 +		n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CO099567CO099567Gossypium spp.sequence_feature


Sequence
>HAU0789 ID=HAU0789; Name=HAU0789; organism=Gossypium spp.; type=genetic_marker; length=146bp
AGTTGTATGTGTGTGTGTGTGTGTATACATATATATATATATATATTGCT
GTAGCAGAAATGATGGGTTATTAGTTTGTAATTTATAGTTTTGCTGACCC
TTTTTTTGTTCTTTTTAACGAATTAGGTTGTTTTGGAACTTGGCTC