HAU0778, HAU0778 (genetic_marker) gossypium spp

Marker Overview
NameHAU0778
Genbank IDCO092971
TypeSSR
SpeciesGossypium spp.
Source SequenceCO092971
Source TypeEST
Repeat Motif(GTTGA)4
PCR ConditionAnnealing temperature: 57.2
Primer 1HAU0778_F: TCCCTTCATCCCTAAAATGA
Primer 2HAU0778_R: ACAATGGCGAATTCCTAAAA
Product Length224
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO092971
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D5_07chromosomeD5_07:3228169..3228392 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr07chromosomeChr07:50305149..50305372 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeHAU0778:1..625 .
Chr01:3200028..3201140 +		n/a
Chr1chromosomeHAU0778:1..625 .
Chr1:33784533..33785645 +		n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CO092971CO092971Gossypium spp.sequence_feature


Sequence
>HAU0778 ID=HAU0778; Name=HAU0778; organism=Gossypium spp.; type=genetic_marker; length=224bp
TCCCTTCATCCCTAAAATGAGGTCAAGAGCTTGAGATTCAAACTCCTTGG
GTACTTGCCCCCTTTCCTCTTGCTTAAAGTTTTATTTGTTTGTTTTTAGT
TAAATGTAATGTTTATGTTGAGTTGAATTGAGTTGATTTTATTGTTTATT
TATTCAATGGGAAGAGCTAGAAATGTCATGCTTGTTCCTGGGTTCCCATG
TTTTTTTTAGGAATTCGCCATTGT