HAU0767, HAU0767 (genetic_marker) gossypium spp

Marker Overview
NameHAU0767
Genbank IDCO086865
TypeSSR
SpeciesGossypium spp.
Source SequenceCO086865
Source TypeEST
Repeat Motif(TCT)6
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU0767_F: CGCTTTTTCATCTCACACAC
Primer 2HAU0767_R: TGGATTGAACATCTGATTGC
Product Length162
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO086865
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018223.1chromosomeCM018223.1:5579223..5579817 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:6109712..6110307 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_09chromosomeD10_09:38847070..38847670 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr6chromosomeDt_chr6:42844537..42845159 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold5942supercontigscaffold5942:398968..399385 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4396supercontigscaffold4396:106898..107424 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:6744387..6744978 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:7563490..7564208 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017657.1chromosomeCM017657.1:5299542..5300132 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:5932663..5933257 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
Chr09chromosomeChr09:6098206..6098802 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr_06chromosomeChr_06:4827931..4828431 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:4484106..4484768 +Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:74649449..74650029 -Gossypium stocksii (E1) genome NSF_v1n/a
E09chromosomeE09:81762219..81762634 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr09chromosomeChr09:2131336..2131752 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CO086865CO086865Gossypium spp.sequence_feature


Sequence
>HAU0767 ID=HAU0767; Name=HAU0767; organism=Gossypium spp.; type=genetic_marker; length=162bp
CGCTTTTTCATCTCACACACTTATCTTCTTCTTCTTCTTCAGCAGTGATC
GTGGCAATGTCTTATCATAAAGAGCTGGCTGCTGCAAAGAAAGCAGCTTC
TCTTGCTGCTCGGCTCTGTCAGAATGTACAAAAGGCTTTGCTGCAATCAG
ATGTTCAATCCA