HAU0572, HAU0572 (genetic_marker) gossypium spp

Marker Overview
NameHAU0572
Genbank IDBQ415989
TypeSSR
SpeciesGossypium spp.
Source SequenceBQ415989
Source TypeEST
Repeat Motif(GAA)5
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0572_F: CTAAGTCCGGTAACGGAAGA
Primer 2HAU0572_R: CTCTCCTGGCTTCCTTCATA
Product Length136
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ415989
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:20982262..20982397 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:20955606..20955741 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018206.1chromosomeCM018206.1:20291460..20291595 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_05chromosomeKI_05:15330859..15330994 -Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:20984097..20984232 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016626.1chromosomeCM016626.1:30857675..30857810 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr9chromosomeAt_chr9:43292481..43292616 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Ghir_A05chromosomeGhir_A05:20715783..20715918 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:20106760..20106895 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:20727804..20727939 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:20891666..20891801 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At05chromosomeAt05:15861967..15862102 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12164supercontigscaffold12164:98130..98265 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A05chromosomeGbar_A05:19871649..19871784 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:20587833..20587968 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:20358460..20358595 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:20747044..20747179 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:20088316..20088451 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:21036240..21036375 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:21979788..21979923 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:20562298..20562433 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_05chromosomeB_05:65904823..65904958 +Gossypium anomalum (B1) genome NSF_v1n/a
E05chromosomeE05:22132152..22132287 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:17602244..17602379 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:169756334..169756469 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BQ415989BQ415989Gossypium spp.sequence_feature


Sequence
>HAU0572 ID=HAU0572; Name=HAU0572; organism=Gossypium spp.; type=genetic_marker; length=136bp
CTAAGTCCGGTAACGGAAGACGTGCCGGAAGGCGATACGAAGAAGAAAAG
AAGAGAGCAAAAACGATGTCGATGTACTCGGAGGGATCAGAGATAACTGC
TTCCGAAAGCAACGAATATGAAGGAAGCCAGGAGAG