HAU0534, HAU0534 (genetic_marker) gossypium spp

Marker Overview
NameHAU0534
Genbank IDBQ407450
TypeSSR
SpeciesGossypium spp.
Source SequenceBQ407450
Source TypeEST
Repeat Motif(CAAT)4
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0534_F: CCCCTTCTTTCTTCTTCCTC
Primer 2HAU0534_R: TTGAAATCAATCCCACACTG
Product Length240
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ407450
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A13chromosomeA13:98359850..98360627 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018214.1chromosomeCM018214.1:102649344..102650120 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:117919764..117920541 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr13chromosomeAt_chr13:25682447..25683224 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:74744178..74744955 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:102546093..102546870 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:104778774..104779551 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:103006833..103007610 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:101497872..101498649 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At13chromosomeAt13:81258943..81259719 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold25877supercontigscaffold25877:6980..7756 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A13chromosomeGbar_A13:103605026..103605802 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:106977516..106978292 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017648.1chromosomeCM017648.1:109635597..109636374 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:104672689..104673465 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:105743114..105743891 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:111740519..111741296 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:116265976..116266753 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_13chromosomeB_13:7656763..7657536 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:35177414..35178183 -Gossypium gossypioides (D6) genome ISU_v1n/a
E13chromosomeE13:107980283..107981060 +Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:90227229..90228002 +Gossypium longicalyx (F1) genome NSF_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BQ407450BQ407450Gossypium spp.sequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch13_At.13N/A48.4HAU0534View
Sequence
>HAU0534 ID=HAU0534; Name=HAU0534; organism=Gossypium spp.; type=genetic_marker; length=240bp
CCCCTTCTTTCTTCTTCCTCCTTTGACCGAAATTTTCAAATTTACGTTCG
CCCCAATCAATCAATCAATCGCTTAGATCTGTTATTTACAAGGCCCGATT
TCAAATATCCAAGATCTGATTCCGAAAACGAAAACGCTACTGTTTTGGGA
CCTCGACTCGAAGCCCTTTCCGCTTCTTTTTTGAGATATCTTTGCTAGTG
ATTCAATTGAGTTGCTGCGCCAGTGTGGGATTGATTTCAA