Gh256, Gh256 (genetic_marker) Gossypium hirsutum | Cottongen

Marker Overview

Cross References

Marker Overview


Name	Gh256
Genbank ID	DQ908209
Type	SSR
Species	Gossypium hirsutum
Germplasm	Tamcot Sphinx
Source Type	genomic
Repeat Motif	TCT(9)
Primer 1	Gh256_F: GATTTTGTGTGTAGAGAATAATGGAAGG
Primer 2	Gh256_R: GTCTTTTGAACCAAATAGCTCTGAAG
Polymorphism	P_ Gh256
Publication	[view all]
Comment	Primer data obtained in 2008-01 from Hoffman, Steve M.

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	DQ908209

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
A11	chromosome	A11:93113519..93113619 .	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	CottonGen marker alignment to genome using primer sequences

Publications


Year	Publication
2007	Hoffman S, Yu J, Grum D, Xiao J, Kohel R, Pepper A. Identification of 700 New Microsatellite Loci from Cotton (G. hirsutum L.). Journal of cotton science. 2007; 11(4):208-241

Germplasm


Stock Name	Type
Tamcot Sphinx	accession

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	GX1135 x GX100-2, F2 (2013)	AD_ch11_At.11	N/A	51.6	GH256	View
2	GX1135 x GX100-2, RIL (2016)	AD_ch11_At.11	N/A	28.9	GH256	View
3	CCRI-35 x Yumian-1, RIL (2015)	AD_ch11_At.11	N/A	0.4	GH256	View
4	CCRI-35 x Yumian-1, RIL (2017)	AD_ch11_At.11	N/A	153.98	Gh256	View