CM0007, CM0007 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCM0007
AliasCM007
Genbank IDCC466087
TypeSSR
SpeciesGossypium hirsutum
GermplasmCoker 312
Source Typegenomic
Repeat Motif(TC)16
Primer 1CM007_F: CGCAACCAAACATATACTTCACAC
Primer 2CM007_R: CCCTTTCCATCCATAGAACG
PolymorphismP_ CM0007
Publication[view all]
ContactPepper, Alan E.
CommentPrimer data obtained in 2000
Contact
NameDetails
Pepper, Alan E.
Description:Comparative genomics with Arabidopsis.
First name:Alan
Last name:Pepper
Title:Associate Professor
Institution:Texas A&M University/Department of Biology
Address:Building 1513/Borlaug Center, College Station, TX 77843-2123
Country:United States
Email:apepper@bio.tamu.edu
Phone:979-845-2518
Fax:979-862-4790
Last update:28-Feb-2009
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCC466087
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A09chromosomeA09:68727032..68727123 .Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1CottonGen marker alignment to genome using primer sequences
Germplasm
Stock NameType
Coker 312accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch23_Dt.09N/A100.52CM7View
2AD-genome wide Reference Map (2009)AD_ch23_Dt.09N/A186cm0007View
3TM-1 x 3-79, RIL (2012)AD_ch09_At.09N/A51.66CM0007aView
4TM-1 x 3-79, RIL (2014)AD_ch09_At.09N/A89.1CM0007aView
5TM-1 x 3-79, RIL (2012)AD_ch23_Dt.09N/A55.35CM0007bView
6TM-1 x 3-79, RIL (2014)AD_ch23_Dt.09N/A90.9CM0007bView
7TM-1 x 3-79, RIL (2012.v3)AD_ch09_At.09N/A89.14CM0007aView
8TM-1 x 3-79, RIL (2012.v3)AD_ch23_Dt.09N/A90.95CM0007bView
9LMY22 x LY343, RIL (2020)D09N/A22.88CM007View