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Marker Overview
Name | UCD_Gh_M_000006 |
Alias | Gh_M_000006 TM1_Sing_EST.DT572902_703 Gh_M_000006_Class_I
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dbSNP ID | N/A |
Type | SNP |
SNP Alleles | T/C |
5' Flanking Sequence | ACCAATACAGACAATCAGTCTGAGACAATGACAAGCTTCGGCCTTTATAGCCGATTTCAA
ACTCTTAAATCTATTGTTTTTGTCGTTTTGTATTTTGGAT |
3' Flanking Sequence | GTTCGTCTGTTGTTTTCTGCTTTGTTGGTTGCGTGTGGCTCCCTGTTTGGCCTCTTCTGC
GTGTTTATTACTCTCTGCAGGTGTCAGAGGCATGGCAGAG |
Species | Gossypium hirsutum |
Germplasm | Acala Maxxa PD-1 Sealand 542 Fibermax 832 TM-1
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Source Type | RNA |
Publication | [view all] |
Contact | Ashrafi, Hamid
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Comment | class_I: no only SNPs derived from contigs with no known homeo-SNP positions in the contig within our data set |
Alignments
The following features are aligned
Publications
Year | Publication |
2015 | Ashrafi H, Hulse-Kemp AM, Wang F, Yang SS, Guan X, Jones DC, Matvienko M, Mockaitis K, Chen ZJ, Stelly DM, Van Deynze A. A Long-Read Transcriptome Assembly of Cotton (Gossypium hirsutum L.) and Intraspecific Single Nucleotide Polymorphism Discovery. 2015; 8(2):1-14. |
Sequence
>UCD_Gh_M_000006 ID=UCD_Gh_M_000006; Name=UCD_Gh_M_000006; organism=Gossypium hirsutum; type=genetic_marker; length=205bp ACCAATACAGACAATCAGTCTGAGACAATGACAAGCTTCGGCCTTTATAG CCGATTTCAAACTCTTAAATCTATTGTTTTTGTCGTTTTGTATTTTGGAT [C/T]GTTCGTCTGTTGTTTTCTGCTTTGTTGGTTGCGTGTGGCTCCCTG TTTGGCCTCTTCTGCGTGTTTATTACTCTCTGCAGGTGTCAGAGGCATGG CAGAG
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