UCD_Gh_M_000006, UCD_Gh_M_000006 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUCD_Gh_M_000006
AliasGh_M_000006
TM1_Sing_EST.DT572902_703
Gh_M_000006_Class_I
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceACCAATACAGACAATCAGTCTGAGACAATGACAAGCTTCGGCCTTTATAGCCGATTTCAA ACTCTTAAATCTATTGTTTTTGTCGTTTTGTATTTTGGAT
3' Flanking SequenceGTTCGTCTGTTGTTTTCTGCTTTGTTGGTTGCGTGTGGCTCCCTGTTTGGCCTCTTCTGC GTGTTTATTACTCTCTGCAGGTGTCAGAGGCATGGCAGAG
SpeciesGossypium hirsutum
GermplasmAcala Maxxa
PD-1
Sealand 542
Fibermax 832
TM-1
Source TypeRNA
Publication[view all]
ContactAshrafi, Hamid
Commentclass_I: no only SNPs derived from contigs with no known homeo-SNP positions in the contig within our data set
Contact
NameDetails
Ashrafi, Hamid
First name:Hamid
Last name:Ashrafi
Title:Bioinformatics Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:ashrafi@ucdavis.edu
Last update:24-Aug-2014
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM017657.1chromosomeCM017657.1:52213851..52214051 +
Germplasm
Stock NameType
Acala Maxxaaccession
PD-1accession
Sealand 542accession
Fibermax 832accession
TM-1accession
Sequence
>UCD_Gh_M_000006 ID=UCD_Gh_M_000006; Name=UCD_Gh_M_000006; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
ACCAATACAGACAATCAGTCTGAGACAATGACAAGCTTCGGCCTTTATAG
CCGATTTCAAACTCTTAAATCTATTGTTTTTGTCGTTTTGTATTTTGGAT
[C/T]GTTCGTCTGTTGTTTTCTGCTTTGTTGGTTGCGTGTGGCTCCCTG
TTTGGCCTCTTCTGCGTGTTTATTACTCTCTGCAGGTGTCAGAGGCATGG
CAGAG