UCcg10005_555, UCcg10005_555 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10005_555
AliasUCcg10005_555
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
5' Flanking SequenceAACAACAGGAAAACCAAAACAGTTTTGGGA
3' Flanking SequenceTTTTAGTCAGCTCAGACACAACGACAGCAA
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10005_F: CCTTCTCCACCAAGCTTCAG
Primer 2cg10005_R: GCCATTGATGGCATTGCT
Primer 3cg10005_F: CCTTCTCCACCAAGCTTCAG
Primer 4cg10005_R: GCCATTGATGGCATTGCT
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018211.1chromosomeCM018211.1:64616890..64616950 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018224.1chromosomeCM018224.1:27410551..27410611 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:34917061..34917121 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:30508766..30508826 +Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:82549426..82549486 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:36280802..36280862 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:60701902..60701962 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr11chromosomeAt_chr11:34272853..34272913 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:26531539..26531599 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:56899922..56899982 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:27804015..27804075 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:68430221..68430281 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:27692077..27692137 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:70010760..70010820 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:26913648..26913708 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:68191538..68191598 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:27855290..27855350 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:63843377..63843437 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D10chromosomeD10:27821705..27821765 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:64983177..64983237 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D10chromosomeGbar_D10:27339394..27339454 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:66527224..66527284 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D10chromosomeD10:27603033..27603093 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:65620344..65620404 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017632.1chromosomeCM017632.1:27347036..27347096 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:71077939..71077999 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017658.1chromosomeCM017658.1:27880839..27880899 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:67472590..67472650 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017710.1chromosomeCM017710.1:27971955..27972015 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:71254534..71254594 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D10chromosomeD10:28022993..28023053 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:33793900..33793960 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:45472870..45472930 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:27273916..27273976 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:61126090..61126150 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:38312102..38312162 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:23916245..23916305 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:19510334..19510394 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:27990323..27990383 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:21374148..21374208 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:16600619..16600679 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:21342815..21342875 -Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:66639168..66639228 +Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:37545324..37545383 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:66174435..66174495 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr11chromosomeUCD_cg10005_555:1..61 .
Chr11:27153196..27153256 -		n/a
Sequence
>UCD_cg10005_555 ID=UCD_cg10005_555; Name=UCD_cg10005_555; organism=Gossypium spp.; type=genetic_marker; length=65bp
AACAACAGGAAAACCAAAACAGTTTTGGGA[C/T]TTTTAGTCAGCTCAG
ACACAACGACAGCAA