UCcg10004_797, UCcg10004_797 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10004_797
AliasUCcg10004_797
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
5' Flanking SequenceATCCAAGAAAGGAAGGAAGACCGAAAAAGA
3' Flanking SequenceGTCCAAGAAGCGGAACAAGCCCACCTTGAA
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10004_F: AGGTTTCTCTTGGGCTGGTT
Primer 2cg10004_R: TCCCATAACATCAGTTCCGA
Primer 3cg10004_F: AGGTTTCTCTTGGGCTGGTT
Primer 4cg10004_R: TCCCATAACATCAGTTCCGA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018227.1chromosomeCM018227.1:2355420..2355480 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:2774383..2774443 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:2098006..2098066 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_13chromosomeKI_13:1471285..1471345 -Gossypioides kirkii genome ISU_v3n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:2930194..2930254 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:2147109..2147169 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:94156617..94156677 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr13chromosomeDt_chr13:54569308..54569368 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr7chromosomeDt_chr7:36603008..36603068 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:2449427..2449487 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:2778494..2778554 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:2396560..2396620 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:2745947..2746007 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:2279843..2279903 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:2876589..2876649 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:2404539..2404599 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:2650430..2650490 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:2427301..2427361 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:2748521..2748581 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:2154496..2154556 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:2843209..2843269 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:2170516..2170576 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:2762836..2762896 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:2251507..2251567 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:2925750..2925810 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:2466252..2466312 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:2875049..2875109 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:2264229..2264289 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:2583750..2583810 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:2506647..2506707 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:3008128..3008188 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:2865635..2865695 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:2762454..2762514 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:2106919..2106979 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:92284836..92284896 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:2208639..2208699 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:2197778..2197838 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:2415749..2415809 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:2408349..2408409 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:2348664..2348724 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:1671684..1671744 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:2357678..2357738 -Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:3203815..3203875 -Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:2382321..2382381 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:112517339..112517399 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr13chromosomeUCD_cg10004_797:1..61 .
Chr13:2060421..2060481 -		n/a
Sequence
>UCD_cg10004_797 ID=UCD_cg10004_797; Name=UCD_cg10004_797; organism=Gossypium spp.; type=genetic_marker; length=65bp
ATCCAAGAAAGGAAGGAAGACCGAAAAAGA[A/G]GTCCAAGAAGCGGAA
CAAGCCCACCTTGAA