SWU00385, SWU00385 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU00385
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
Publication[view all]
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:3079841..3079964 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A12chromosomeA12:3419921..3420026 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:3005203..3005326 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018226.1chromosomeCM018226.1:3000587..3000710 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:3231632..3231737 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_12chromosomeKI_12:12633471..12633594 +Gossypioides kirkii genome ISU_v3n/a
tig00000498_CRI-A2_v1.0.a1chromosometig00000498_CRI-A2_v1.0.a1:850415..850520 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:2717744..2717867 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:122490469..122490592 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr1chromosomeDt_chr1:37997412..37997535 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr8chromosomeAt_chr8:77950473..77950578 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:2891235..2891358 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:3275848..3275953 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:3068520..3068643 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:3317981..3318086 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:3025233..3025356 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:3229167..3229272 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:3086725..3086848 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:3380823..3380928 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:3069818..3069941 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:3349758..3349863 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:2975514..2975637 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:3229929..3230034 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:2916085..2916208 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:3228440..3228545 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:2989365..2989488 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:3150918..3151023 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:2894689..2894812 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:3412814..3412919 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:2965241..2965364 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:3082963..3083068 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:3198640..3198763 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:3353887..3353992 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:3360991..3361096 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:3373262..3373367 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:2925044..2925167 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:2783680..2783803 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:2787115..2787238 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:2822770..2822893 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:2681231..2681354 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:1973621..1973744 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:2673413..2673536 +Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:3461432..3461555 +Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:2772862..2772985 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:3410269..3410391 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch26_Dt.12N/A0SWU00385View
Sequence
>SWU00385 ID=SWU00385; Name=SWU00385; organism=Gossypium hirsutum; type=genetic_marker; length=107bp
CATAATTCACCGCCAGTTCCCTTCCGCGCTTACACTGGXGACCCTTTAAT
GCCGCCTCCTCCTCCACCGCTTCATCCTCTTTCTCCCGAACAAGAAATCT
CCGTCAT