SWU00058, SWU00058 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU00058
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
PolymorphismP_ SWU00058
Publication[view all]
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:4878817..4878950 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A01chromosomeA01:6598492..6598625 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:4971588..4971721 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:5676640..5676773 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:4691255..4691388 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_01chromosomeKI_01:3862605..3862737 +Gossypioides kirkii genome ISU_v3n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:6348539..6348672 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:55844294..55844427 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:7160112..7160245 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1094.1supercontigscaffold1094.1:93702..93835 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr2chromosomeAt_chr2:6423998..6424131 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:4647356..4647489 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:5336217..5336350 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:5225245..5225378 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:5798397..5798530 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:4942350..4942483 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:5536650..5536783 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:4948540..4948673 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:5799874..5800007 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:5076353..5076486 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:5747154..5747287 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:5426649..5426782 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:5618633..5618766 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:5245335..5245468 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:5533261..5533394 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:5081299..5081432 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:6314700..6314833 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:5514657..5514790 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:5733827..5733960 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:5190869..5191002 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:5805398..5805531 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:5340504..5340637 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:5777585..5777718 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:6146019..6146152 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:4683441..4683574 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:6106719..6106852 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:5085222..5085355 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:4049276..4049409 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:3939859..3939992 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:5296267..5296400 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:4703895..4704028 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:4611770..4611903 +Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:7091341..7091474 +Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:4924174..4924307 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:192850066..192850199 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch15_Dt.01N/A27.1SWU00058View
Sequence
>SWU00058 ID=SWU00058; Name=SWU00058; organism=Gossypium hirsutum; type=genetic_marker; length=134bp
TGGATCTGCAACAGTGAGCCCCTGTTCATCTTACCACCCAAGCCCCCGCG
CTTCTTACAATCCGAGCCCCGCATCATCATCTTTTCCAAGCCCAGCTTCT
TCTTCGTATGTGGTTAATCCCAATGGTGATGTGA