PGML0372, PGML0372 (genetic_marker) Gossypium raimondii

Marker Overview


Name	PGML0372
Genbank ID	N/A
Type	SSR
Species	Gossypium raimondii
Repeat Motif	(CTTT)5
Product Length	288
Publication	[view all]
Comment	BAC_ID=FITB945.y2 1

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
D06	chromosome	D06:67606509..67606792 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
CM018220.1	chromosome	CM018220.1:61889489..61889772 -	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
D5_06	chromosome	D5_06:59900824..59901111 -	Gossypium raimondii (D5) 'D5-4' genome NSF_v1	n/a
At_chr9	chromosome	At_chr9:84540834..84541117 +	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
D06	chromosome	D06:63238815..63239098 -	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_D06	chromosome	Ghir_D06:65851414..65851697 -	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
D06	chromosome	D06:64441266..64441549 -	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
D06	chromosome	D06:62161626..62161909 -	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
Gbar_D06	chromosome	Gbar_D06:62085924..62086207 -	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
D06	chromosome	D06:61907437..61907720 -	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017654.1	chromosome	CM017654.1:65949117..65949400 -	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
CM017706.1	chromosome	CM017706.1:62422760..62423043 -	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
D06	chromosome	D06:65689886..65690169 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a
Chr06	chromosome	Chr06:59508742..59509029 -	Gossypium raimondii (D5) 'Grai D502' genome HAU_v1	n/a

Publications


Year	Publication
2015	Tang S, Teng Z, Zhai T, Fang X, Liu F, Liu D, Zhang J, Liu D, Wang S, Zhang K, Shao Q. Construction of genetic map and QTL analysis of fiber quality traits for Upland cotton (Gossypium hirsutum L.). Euphytica. 2015 Jan 1;201(2):195-213.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Yumian-1 x T586, RIL (2015)	AD_ch06_At.06	N/A	139.8	PGML0372	View
2	CCRI-35 x Yumian-1, RIL (2015)	AD_ch06_At.06	N/A	52.2	PGML0372	View
3	CCRI-35 x Yumian-1, RIL (2017)	AD_ch25_Dt.06	N/A	107.91	PGML0372	View

Sequence

>PGML0372 ID=PGML0372; Name=PGML0372; organism=Gossypium raimondii; type=genetic_marker; length=288bp
ATACTGTCCGTTGGAAAGCGTCATCGAGATACAGCCCCGGAGAAAATTAT
GACTCGATAGAAACATATTAACTAACACTTGCAAATCACATGCATGAAAC
AAATGTTTACTGAAGCTTTTTCCTTTGTGTATTCAAATGCAGCACTTCAT
TTTTGCAACGGTCAAACTTTTTGGGTAGAATTATGTAATTAGCCCATCTT
TCTTTCTTTCTTTCTTTCTCATTTTAACCCTTCATTTTTTTTTATCTCCT
TCTCTAACTAGCCCTTAAACCAAGGACATAAGGCTTGA

Search form

PGML0372, PGML0372 (genetic_marker) Gossypium raimondii