HAU3291, HAU3291 (genetic_marker) gossypium spp

Marker Overview
NameHAU3291
Genbank IDGR716890
TypeSSR
SpeciesGossypium spp.
Source SequenceGR711822.1
Source TypeEST
Repeat Motif(AAAAG)3
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU3291_F: ACGAAGCAAGCAAGGATCCGA
Primer 2HAU3291_R: CGCTCACCACGTACCTGCAA
Product Length315
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGR716890
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:66123941..66124255 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:2468390..2468704 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
At_chr5chromosomeAt_chr5:612570..612884 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold506_A03supercontigscaffold506_A03:49635..49949 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:3144889..3145203 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:2802281..2802595 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:2996801..2997115 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:2462048..2462362 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold3791supercontigscaffold3791:369476..369790 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:2475627..2475941 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:2591587..2591901 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:2790509..2790823 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:3059502..3059816 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:2718960..2719274 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:3029505..3029819 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GR711822.1GR711822.1Gossypium spp.sequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch05_At.05N/A82.1HAU3291View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch13_At.13N/A94HAU3291View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch17_Dt.03N/A32.1HAU3291View
4CCRI-35 x Yumian-1, RIL (2017)AD_ch17_Dt.03N/A103.67HAU3291View
Sequence
>HAU3291 ID=HAU3291; Name=HAU3291; organism=Gossypium spp.; type=genetic_marker; length=315bp
ACGAAGCAAGCAAGGATCCGAAAGTGGCAATACCAAGATAAGTCCCTTTC
TTTTTTATTATTCTTTTTTATACTGTAAATAAAAATCAAGAAGAAAAAAG
AAATGAAATCGAAAGAAATGCTCGGTCTAAGAATCACATTTTCCTGTTTG
TTTTCTATTTGATTGTTTTGTATGCGTAAAAAAAAATACATTCATGCTGT
TTTGGGCTTTATAGTCGATGGAAAGGTAAAAGAAAAGAAAAGAAATACAA
GTTTTTCTATTCTCTTTTTCTATTTGCTGTTGTTCTCTTGTCTGTTTGCA
GGTACGTGGTGAGCG