HAU1693, HAU1693 (genetic_marker) gossypium spp

Marker Overview
NameHAU1693
Genbank IDDR454604
TypeSSR
SpeciesGossypium spp.
Source SequenceDR454604
Source TypeEST
Repeat Motif(TA)7
PCR ConditionAnnealing temperature: 57.1
Primer 1HAU1693_F: TGGATGATGTGGAAAAACAG
Primer 2HAU1693_R: AAATCCAAAAACACCACCAC
Product Length180
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR454604
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D07chromosomeD07:9736646..9736830 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018221.1chromosomeCM018221.1:9208554..9208738 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018208.1chromosomeCM018208.1:11041026..11041208 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
KI_07chromosomeKI_07:31057130..31057308 +Gossypioides kirkii genome ISU_v3
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:12118806..12118984 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_07chromosomeD10_07:44878803..44878981 +Gossypium turneri (D10) genome NSF_v1_a2
CM016620.1chromosomeCM016620.1:101479643..101479808 +Gossypium australe (G2) genome CRI_v1.1
Dt_chr1chromosomeDt_chr1:44546325..44546509 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
scaffold1609.1supercontigscaffold1609.1:118155..118335 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D07chromosomeD07:9388387..9388571 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D07chromosomeGhir_D07:9609895..9610076 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A07chromosomeGhir_A07:11004996..11005176 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D07chromosomeD07:9205277..9205461 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D07chromosomeD07:9547013..9547197 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A07chromosomeA07:10970808..10970988 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D07chromosomeD07:9437337..9437521 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Dt07chromosomeDt07:10272767..10272951 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
At07chromosomeAt07:11149578..11149760 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold8369supercontigscaffold8369:134219..134401 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold41177supercontigscaffold41177:8370..8554 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D07chromosomeGbar_D07:9613170..9613354 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A07chromosomeGbar_A07:11049651..11049833 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D07chromosomeD07:9388335..9388519 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
A07chromosomeA07:10817170..10817352 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017629.1chromosomeCM017629.1:9703018..9703202 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017616.1chromosomeCM017616.1:10862763..10862943 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017655.1chromosomeCM017655.1:9751991..9752175 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017642.1chromosomeCM017642.1:11050048..11050232 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017707.1chromosomeCM017707.1:9544459..9544643 -Gossypium darwinii (AD5) genome HGS_v1.1
CM017694.1chromosomeCM017694.1:10949180..10949362 -Gossypium darwinii (AD5) genome HGS_v1.1
D07chromosomeD07:9713422..9713606 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr07chromosomeChr07:11371100..11371284 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr07chromosomeChr07:11406485..11406663 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
B_07chromosomeB_07:11229262..11229442 -Gossypium anomalum (B1) genome NSF_v1
Chr01chromosomeChr01:9418969..9419151 -Gossypium thurberi (D1-5) genome CRI_v1
chr01chromosomechr01:8466872..8467159 -Gossypium armourianum (D2-1) genome ISU_v1
Chr01chromosomeChr01:9311535..9311718 -Gossypium davidsonii (D3d-8) genome CRI_v1
Chr01chromosomeChr01:6417220..6417410 -Gossypium gossypioides (D6) genome ISU_v1
E07chromosomeE07:80378118..80378298 +Gossypium stocksii (E1) genome NSF_v1
F07chromosomeF07:10311338..10311522 -Gossypium longicalyx (F1) genome NSF_v1
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR454604DR454604Gossypium spp.sequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1DH962 X Ji Mian 5, F2 (2015)AD_ch07_At.07N/A51.78HAU1693View
20-153 x sGK9708, RIL (2016)AD_ch07_At.07N/A57.7HAU1693View
3DH962 x Ji Mian 5, RIL (2015)AD_ch01_At.01N/A29.2HAU1693View
4DH962 x Ji Mian 5, RIL (2015)AD_ch15_Dt.01N/A29.2HAU1693View
Sequence
>HAU1693 ID=HAU1693; Name=HAU1693; organism=Gossypium spp.; type=genetic_marker; length=180bp
TGGATGATGTGGAAAAACAGGTGAAAGAGATTGTATTACAGCATATCATA
GCATGCCAAAAAGGGAAATTCTTTCATCGTTGTGGTCATGTTAGTTTATA
TATATATATAACAGAATATTATCCCATATACCGTCTGTGGAGTTTTTATA
TTTTAAATACGTGGTGGTGTTTTTGGATTT