HAU0846, HAU0846 (genetic_marker) gossypium spp

Marker Overview
NameHAU0846
Genbank IDCO125035
TypeSSR
SpeciesGossypium spp.
Source SequenceCO125035
Source TypeEST
Repeat Motif(GGAT)4
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0846_F: GGGGTTGATGAACAGATGAT
Primer 2HAU0846_R: AAGTCATTCAGGGTGCTTTC
Product Length281
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO125035
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:20852010..20852290 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:15997640..15997920 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_01chromosomeKI_01:10137241..10137520 +Gossypioides kirkii genome ISU_v3n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:23092102..23092382 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:44288058..44288338 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Gbar_A01chromosomeGbar_A01:20999080..20999360 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:20827189..20827469 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:22367412..22367692 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:21515821..21516101 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:21006037..21006317 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
Chr01chromosomeChr01:22023093..22023373 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:23404546..23404826 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:15893224..15893504 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:22926350..22926630 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:16887535..16887815 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:14742583..14742863 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:12718326..12718606 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:15542110..15542390 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:14075038..14075318 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr02chromosomeHAU0846:1..507 .
Chr02:17801086..17801592 +		n/a
Chr2chromosomeHAU0846:1..507 .
Chr2:31488402..31488908 -		n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CO125035CO125035Gossypium spp.sequence_feature


Sequence
>HAU0846 ID=HAU0846; Name=HAU0846; organism=Gossypium spp.; type=genetic_marker; length=281bp
GGGGTTGATGAACAGATGATCAACGTTCAGAACAAGAATTCATTTTACTT
TGGGGGGGGGATTCCCAATAATGGGAAGTCCAGGGTTTGGGATATTCCCC
CAAAGACCCTAAGGAGGGCATCGCCTTTTGGGGGGGACTCACCCTCAATC
CCGGGGATGTTTAGGGGGGTAAGTGAACAATTCCCAGCAATGTTCCGTCG
CAAGGGGTTTTTGCATTGGTCCCCTGGTGAAGGGATGGATGAGATGGAGT
TCCCCGAAGCAGAAAGCACCCTGAATGACTT