HAU0846, HAU0846 (genetic_marker) gossypium spp

Marker Overview


Name	HAU0846
Genbank ID	CO125035
Type	SSR
Species	Gossypium spp.
Source Sequence	CO125035
Source Type	EST
Repeat Motif	(GGAT)4
PCR Condition	Annealing temperature: 57.0
Primer 1	HAU0846_F: GGGGTTGATGAACAGATGAT
Primer 2	HAU0846_R: AAGTCATTCAGGGTGCTTTC
Product Length	281
Publication	[view all]
Comment	Primer data obtained in 2012

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	CO125035

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM018202.1	chromosome	CM018202.1:20852010..20852290 +
D5_01	chromosome	D5_01:15997640..15997920 +
KI_01	chromosome	KI_01:10137241..10137520 +
Chr01_CRI-A2_v1.0.a1	chromosome	Chr01_CRI-A2_v1.0.a1:23092102..23092382 +
D10_01	chromosome	D10_01:44288058..44288338 -
Gbar_A01	chromosome	Gbar_A01:20999080..20999360 +
A01	chromosome	A01:20827189..20827469 +
CM017610.1	chromosome	CM017610.1:22367412..22367692 +
CM017636.1	chromosome	CM017636.1:21515821..21516101 +
CM017688.1	chromosome	CM017688.1:21006037..21006317 +
Chr01	chromosome	Chr01:22023093..22023373 +
Chr01	chromosome	Chr01:23404546..23404826 +
Chr01	chromosome	Chr01:15893224..15893504 +
B_01	chromosome	B_01:22926350..22926630 +
Chr02	chromosome	Chr02:16887535..16887815 +
chr02	chromosome	chr02:14742583..14742863 +
Chr_02	chromosome	Chr_02:12718326..12718606 +
Chr02	chromosome	Chr02:15542110..15542390 +
Chr02	chromosome	Chr02:14075038..14075318 +
Chr02	chromosome	HAU0846:1..507 . Chr02:17801086..17801592 +
Chr2	chromosome	HAU0846:1..507 . Chr2:31488402..31488908 -

Publications


Year	Publication
2011	Yu Y, Yuan D, Liang S, Li X, Wang X, Lin Z, Zhang X. Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between gossypium hirsutum and G. barbadense. BMC genomics. 2011; 12:15

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
CO125035	CO125035	Gossypium spp.	sequence_feature

Sequence

>HAU0846 ID=HAU0846; Name=HAU0846; organism=Gossypium spp.; type=genetic_marker; length=281bp
GGGGTTGATGAACAGATGATCAACGTTCAGAACAAGAATTCATTTTACTT
TGGGGGGGGGATTCCCAATAATGGGAAGTCCAGGGTTTGGGATATTCCCC
CAAAGACCCTAAGGAGGGCATCGCCTTTTGGGGGGGACTCACCCTCAATC
CCGGGGATGTTTAGGGGGGTAAGTGAACAATTCCCAGCAATGTTCCGTCG
CAAGGGGTTTTTGCATTGGTCCCCTGGTGAAGGGATGGATGAGATGGAGT
TCCCCGAAGCAGAAAGCACCCTGAATGACTT

Search form

HAU0846, HAU0846 (genetic_marker) gossypium spp