HAU0841, HAU0841 (genetic_marker) gossypium spp

Marker Overview
NameHAU0841
Genbank IDCO122944
TypeSSR
SpeciesGossypium spp.
Source SequenceCO122944
Source TypeEST
Repeat Motif(GCA)7
PCR ConditionAnnealing temperature: 56.8
Primer 1HAU0841_F: CAACAACAACAGCAACAACA
Primer 2HAU0841_R: AGGAATCTGAGGAGATGCAG
Product Length258
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO122944
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:11151721..11151987 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:8931463..8932139 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:10592823..10593089 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:53467386..53467643 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:41055252..41055503 -Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:119949157..119949839 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:55355647..55355907 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:14381569..14381829 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr11chromosomeAt_chr11:57749779..57750092 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:6355805..6356065 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:10439408..10439674 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:10702776..10703042 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:10747948..10748214 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:9423984..9424660 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:10336839..10337105 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:9623176..9623852 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:11172095..11172361 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt10chromosomeDt10:9514448..9515130 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt10chromosomeDt10:9515808..9516134 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At10chromosomeAt10:11330707..11330973 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6061supercontigscaffold6061:277722..278404 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6061supercontigscaffold6061:279082..279408 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5915supercontigscaffold5915:588546..588812 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:8754429..8755105 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:10852900..10853166 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:9322425..9323101 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:10739545..10739811 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:9119591..9120267 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:10706279..10706545 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:9984598..9984861 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:11172157..11172423 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:9249642..9250318 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:10917251..10917517 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:11232583..11232849 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:10665402..10666084 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:11084025..11084707 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:8700031..8700288 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:89829275..89829541 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:7677710..7677967 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:8184536..8185215 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:6820847..6821517 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:8981963..8982220 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:7541172..7541839 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:6020718..6021388 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:7766029..7766461 +Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:101265980..101266288 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:9542354..9543030 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:149599665..149599922 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr11chromosomeHAU0841:1..830 .
Chr11:8844762..8845743 +		n/a
Chr11chromosomeHAU0841:1..830 .
Chr11:10134951..10135932 +		n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CO122944CO122944Gossypium spp.sequence_feature


Sequence
>HAU0841 ID=HAU0841; Name=HAU0841; organism=Gossypium spp.; type=genetic_marker; length=258bp
CAACAACAACAGCAACAACAGCGGCAGCAGCAGCAACAGCAGCAAGCAAA
GCAACAGCTGTCCACTCATCAGATGTCCCAGCTGCATCAGATGAATGATG
TAAATGATATGAGGCAGGGGATGGGTGTTAAGCCAGGGGTATTTCAACAT
CTCCCAGCAGGCCAGCGTCAATCTTATACCCATCAACAGTTGAAACCAGG
TGCTCAATTTCCTGTTTCTTCACCTCAGCTACTTCAGGCTGCATCTCCTC
AGATTCCT