HAU0841, HAU0841 (genetic_marker) gossypium spp

Marker Overview
NameHAU0841
Genbank IDCO122944
TypeSSR
SpeciesGossypium spp.
Source SequenceCO122944
Source TypeEST
Repeat Motif(GCA)7
PCR ConditionAnnealing temperature: 56.8
Primer 1HAU0841_F: CAACAACAACAGCAACAACA
Primer 2HAU0841_R: AGGAATCTGAGGAGATGCAG
Product Length258
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO122944
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A10chromosomeA10:11151721..11151987 -
CM018224.1chromosomeCM018224.1:8931463..8932139 +
CM018211.1chromosomeCM018211.1:10592823..10593089 -
D5_10chromosomeD5_10:53467386..53467643 -
KI_10chromosomeKI_10:41055252..41055503 -
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:119949157..119949839 +
D10_10chromosomeD10_10:55355647..55355907 -
CM016623.1chromosomeCM016623.1:14381569..14381829 +
At_chr11chromosomeAt_chr11:57749779..57750092 +
Dt_chr11chromosomeDt_chr11:6355805..6356065 -
A10chromosomeA10:10439408..10439674 -
Ghir_A10chromosomeGhir_A10:10702776..10703042 -
A10chromosomeA10:10747948..10748214 -
D10chromosomeD10:9423984..9424660 +
A10chromosomeA10:10336839..10337105 -
D10chromosomeD10:9623176..9623852 +
A10chromosomeA10:11172095..11172361 -
Dt10chromosomeDt10:9514448..9515130 +
Dt10chromosomeDt10:9515808..9516134 +
At10chromosomeAt10:11330707..11330973 -
scaffold6061supercontigscaffold6061:277722..278404 +
scaffold6061supercontigscaffold6061:279082..279408 +
scaffold5915supercontigscaffold5915:588546..588812 -
Gbar_D10chromosomeGbar_D10:8754429..8755105 +
Gbar_A10chromosomeGbar_A10:10852900..10853166 -
D10chromosomeD10:9322425..9323101 +
A10chromosomeA10:10739545..10739811 -
CM017632.1chromosomeCM017632.1:9119591..9120267 +
CM017619.1chromosomeCM017619.1:10706279..10706545 -
CM017658.1chromosomeCM017658.1:9984598..9984861 -
CM017645.1chromosomeCM017645.1:11172157..11172423 -
CM017710.1chromosomeCM017710.1:9249642..9250318 +
CM017697.1chromosomeCM017697.1:10917251..10917517 -
A10chromosomeA10:11232583..11232849 -
Chr10chromosomeChr10:10665402..10666084 +
Chr10chromosomeChr10:11084025..11084707 +
Chr10chromosomeChr10:8700031..8700288 +
B_10chromosomeB_10:89829275..89829541 -
Chr11chromosomeChr11:7677710..7677967 -
chr11chromosomechr11:8184536..8185215 +
Chr_11chromosomeChr_11:6820847..6821517 +
Chr11chromosomeChr11:8981963..8982220 +
Chr11chromosomeChr11:7541172..7541839 +
Chr11chromosomeChr11:6020718..6021388 +
Chr11chromosomeChr11:7766029..7766461 +
E10chromosomeE10:101265980..101266288 -
F10chromosomeF10:9542354..9543030 +
Chr10chromosomeChr10:149599665..149599922 -
Chr11chromosomeHAU0841:1..830 .
Chr11:8844762..8845743 +
Chr11chromosomeHAU0841:1..830 .
Chr11:10134951..10135932 +
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CO122944CO122944Gossypium spp.sequence_feature


Sequence
>HAU0841 ID=HAU0841; Name=HAU0841; organism=Gossypium spp.; type=genetic_marker; length=258bp
CAACAACAACAGCAACAACAGCGGCAGCAGCAGCAACAGCAGCAAGCAAA
GCAACAGCTGTCCACTCATCAGATGTCCCAGCTGCATCAGATGAATGATG
TAAATGATATGAGGCAGGGGATGGGTGTTAAGCCAGGGGTATTTCAACAT
CTCCCAGCAGGCCAGCGTCAATCTTATACCCATCAACAGTTGAAACCAGG
TGCTCAATTTCCTGTTTCTTCACCTCAGCTACTTCAGGCTGCATCTCCTC
AGATTCCT