HAU0832, HAU0832 (genetic_marker) gossypium spp

Marker Overview


Name	HAU0832
Genbank ID	CO120794
Type	SSR
Species	Gossypium spp.
Source Sequence	CO120794
Source Type	EST
Repeat Motif	(TGC)6
PCR Condition	Annealing temperature: 56.5
Primer 1	HAU0832_F: TGTTGCAAGGTATGTTTTGG
Primer 2	HAU0832_R: TGCTTGATTCCATCAACTTT
Product Length	203
Publication	[view all]
Comment	Primer data obtained in 2012

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	CO120794

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
CM016623.1	chromosome	CM016623.1:1110130..1110948 -	Gossypium australe (G2) genome CRI_v1.1	n/a
B_10	chromosome	B_10:96065333..96066154 -	Gossypium anomalum (B1) genome NSF_v1	n/a
Chr11	chromosome	Chr11:662984..663803 -	Gossypium thurberi (D1-5) genome CRI_v1	n/a
Chr11	chromosome	Chr11:684654..685474 -	Gossypium davidsonii (D3d-8) genome CRI_v1	n/a
Chr11	chromosome	Chr11:558682..559501 -	Gossypium aridum (D4) genome ISU_v1	n/a
Chr11	chromosome	Chr11:545293..546112 -	Gossypium gossypioides (D6) genome ISU_v1	n/a
F10	chromosome	F10:688385..689204 -	Gossypium longicalyx (F1) genome NSF_v1	n/a

Publications


Year	Publication
2011	Yu Y, Yuan D, Liang S, Li X, Wang X, Lin Z, Zhang X. Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between gossypium hirsutum and G. barbadense. BMC genomics. 2011; 12:15

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
CO120794	CO120794	Gossypium spp.	sequence_feature

Sequence

>HAU0832 ID=HAU0832; Name=HAU0832; organism=Gossypium spp.; type=genetic_marker; length=203bp
TGTTGCAAGGTATGTTTTGGAGTCACAGCACATGAAGAAGTTTTTTGACT
ATATACAACTTCCAAAGTTTGACATTGCTGCTGATGCTGCTGCAACTTTT
AAGGAGCTCTTGACAAGGCATAAGTCCACTGTAGCTGAATTTCTTTCCAA
GAACTATGACTGGTTTTTTGAGGAATATAACTCAAAGTTGATGGAATCAA
GCA

Search form

HAU0832, HAU0832 (genetic_marker) gossypium spp