HAU0797, HAU0797 (genetic_marker) gossypium spp

Marker Overview
NameHAU0797
Genbank IDCO106311
TypeSSR
SpeciesGossypium spp.
Source SequenceCO106311
Source TypeEST
Repeat Motif(TCT)6
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0797_F: ACTCAAAGAACCAACCGAAG
Primer 2HAU0797_R: TAACACCATCTGTGGCAAAC
Product Length292
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO106311
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:1992344..1993550 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D04chromosomeD04:1875560..1876769 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:1835733..1836933 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:100563463..100564662 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:48312527..48313727 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_04chromosomeD10_04:1808851..1810062 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:2452325..2453462 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1471.1supercontigscaffold1471.1:411046..412255 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1471.1supercontigscaffold1471.1:292889..294095 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:1892721..1893927 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D04chromosomeD04:1781345..1782554 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:1950155..1951361 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D04chromosomeGhir_D04:1833492..1834701 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:2045620..2046826 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:1935875..1937084 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:1832479..1833685 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:1715930..1717139 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:1832447..1833653 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D04chromosomeD04:1715576..1716785 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At05chromosomeAt05:92000311..92001510 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17234supercontigscaffold17234:73893..75093 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11539supercontigscaffold11539:42903..44102 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D04chromosomeGbar_D04:1809354..1810554 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:100721430..100722629 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:1869965..1871165 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:105664749..105665948 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:1965502..1966707 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017626.1chromosomeCM017626.1:1877242..1878452 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:1981602..1982802 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:1974156..1975357 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017704.1chromosomeCM017704.1:1862234..1863444 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:103582064..103583263 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:2277201..2278407 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D04chromosomeD04:2160412..2161621 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:48743158..48744360 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr12chromosomeChr12:1965679..1966885 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:1347752..1348948 +Gossypium gossypioides (D6) genome ISU_v1n/a
E04chromosomeE04:2974175..2975378 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr04chromosomeChr04:1986458..1987633 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CO106311CO106311Gossypium spp.sequence_feature


Sequence
>HAU0797 ID=HAU0797; Name=HAU0797; organism=Gossypium spp.; type=genetic_marker; length=292bp
ACTCAAAGAACCAACCGAAGTACTAACTCGTGTCTGACTGTCGTGTCGGT
TTATTGTTCATTGCATACCATAGTTAATATCTTAGAAAAAAAAATATACT
TTTCGTAAGGCAAAGACGGGCCATGGAGGTGGAAGAGCTAGAGAAGAGAA
AGTCCAGAAAGATTACGTCTTCTTCTCCTTCTTCAGCTCTTATAAATAAC
CTTGATGATGGCTGCCTTATGCATATTTTCAGCTTCTTGTCTCCCATTCC
AGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGTGTTA