HAU0793, HAU0793 (genetic_marker) gossypium spp

Marker Overview
NameHAU0793
Genbank IDCO104490
TypeSSR
SpeciesGossypium spp.
Source SequenceCO104490
Source TypeEST
Repeat Motif(TGA)6
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0793_F: CTGCAAATGAGGAAGAGGTT
Primer 2HAU0793_R: CATCGTCAGAGTCAGAGTCG
Product Length201
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO104490
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:49617142..49617591 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:47224564..47225013 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:40561433..40561882 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_09chromosomeD10_09:3347767..3348216 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:4852553..4853001 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr6chromosomeDt_chr6:3365554..3366003 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:47421026..47421475 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:49410989..49411438 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:48739499..48739948 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:49157878..49158327 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:47252605..47253054 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold40120supercontigscaffold40120:20932..21381 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold40120supercontigscaffold40120:18722..19171 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:48104054..48104503 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:50497269..50497718 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:48182662..48183111 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:49705503..49705952 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:48902304..48902753 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:50986581..50987030 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:46781961..46782410 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:66937617..66938064 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:47534313..47534762 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:39418786..39419235 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:33087671..33088120 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:48639248..48639629 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:27743562..27744011 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:33932576..33933024 +Gossypium lobatum (D7) genome ISU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CO104490CO104490Gossypium spp.sequence_feature


Sequence
>HAU0793 ID=HAU0793; Name=HAU0793; organism=Gossypium spp.; type=genetic_marker; length=201bp
CTGCAAATGAGGAAGAGGTTGAAGATGATGATATGGATGGTTTCCAGACT
GATGATGAAGATGATGCTAATGCTTCCGACAAGGAAATGGGAGTTGATGC
AGAGGATGAGGATGAAGCTGATAACATCAGGCTTCAAAAATTAGCTGCCC
AGGCTAAGGCTTTCCATCCAACTGATGATGACGACTCTGACTCTGACGAT
G