HAU0793, HAU0793 (genetic_marker) gossypium spp

Marker Overview


Name	HAU0793
Genbank ID	CO104490
Type	SSR
Species	Gossypium spp.
Source Sequence	CO104490
Source Type	EST
Repeat Motif	(TGA)6
PCR Condition	Annealing temperature: 57.0
Primer 1	HAU0793_F: CTGCAAATGAGGAAGAGGTT
Primer 2	HAU0793_R: CATCGTCAGAGTCAGAGTCG
Product Length	201
Publication	[view all]
Comment	Primer data obtained in 2012

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	CO104490

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D09	chromosome	D09:49617142..49617591 +
CM018223.1	chromosome	CM018223.1:47224564..47225013 +
D5_09	chromosome	D5_09:40561433..40561882 +
D10_09	chromosome	D10_09:3347767..3348216 -
CM016622.1	chromosome	CM016622.1:4852553..4853001 -
Dt_chr6	chromosome	Dt_chr6:3365554..3366003 +
D09	chromosome	D09:47421026..47421475 +
Ghir_D09	chromosome	Ghir_D09:49410989..49411438 +
D09	chromosome	D09:48739499..48739948 +
D09	chromosome	D09:49157878..49158327 +
D09	chromosome	D09:47252605..47253054 +
scaffold40120	supercontig	scaffold40120:20932..21381 -
scaffold40120	supercontig	scaffold40120:18722..19171 -
Gbar_D09	chromosome	Gbar_D09:48104054..48104503 +
D09	chromosome	D09:50497269..50497718 +
CM017631.1	chromosome	CM017631.1:48182662..48183111 +
CM017657.1	chromosome	CM017657.1:49705503..49705952 +
CM017709.1	chromosome	CM017709.1:48902304..48902753 +
D09	chromosome	D09:50986581..50987030 +
Chr09	chromosome	Chr09:46781961..46782410 +
B_09	chromosome	B_09:66937617..66938064 +
Chr06	chromosome	Chr06:47534313..47534762 +
chr06	chromosome	chr06:39418786..39419235 +
Chr_06	chromosome	Chr_06:33087671..33088120 +
Chr06	chromosome	Chr06:48639248..48639629 +
Chr06	chromosome	Chr06:27743562..27744011 +
Chr06	chromosome	Chr06:33932576..33933024 +

Publications


Year	Publication
2011	Yu Y, Yuan D, Liang S, Li X, Wang X, Lin Z, Zhang X. Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between gossypium hirsutum and G. barbadense. BMC genomics. 2011; 12:15

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
CO104490	CO104490	Gossypium spp.	sequence_feature

Sequence

>HAU0793 ID=HAU0793; Name=HAU0793; organism=Gossypium spp.; type=genetic_marker; length=201bp
CTGCAAATGAGGAAGAGGTTGAAGATGATGATATGGATGGTTTCCAGACT
GATGATGAAGATGATGCTAATGCTTCCGACAAGGAAATGGGAGTTGATGC
AGAGGATGAGGATGAAGCTGATAACATCAGGCTTCAAAAATTAGCTGCCC
AGGCTAAGGCTTTCCATCCAACTGATGATGACGACTCTGACTCTGACGAT
G

Search form

HAU0793, HAU0793 (genetic_marker) gossypium spp