HAU0768, HAU0768 (genetic_marker) gossypium spp

Marker Overview
NameHAU0768
Genbank IDCO087194
TypeSSR
SpeciesGossypium spp.
Source SequenceCO087194
Source TypeEST
Repeat Motif(CTT)5
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0768_F: GGCTATGCTGCATCCTTATT
Primer 2HAU0768_R: ATCCAAACAATGGACTTCGT
Product Length268
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO087194
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:97527781..97528145 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018202.1chromosomeCM018202.1:106697002..106697366 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_01chromosomeKI_01:34387157..34387508 -Gossypioides kirkii genome ISU_v3n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:92763141..92763505 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:4988154..4988518 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:129491738..129492107 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold4545.1supercontigscaffold4545.1:53754..54118 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold2331.1supercontigscaffold2331.1:36802..37166 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:93566826..93567190 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:111098783..111099147 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:111723941..111724305 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:109394726..109395090 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:106167589..106167953 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At01chromosomeAt01:76821205..76821569 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8298supercontigscaffold8298:139374..139738 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A01chromosomeGbar_A01:109138545..109138909 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:109051671..109052035 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:107733000..107733364 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:115179079..115179443 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:105226365..105226729 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:112951040..112951404 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:116337458..116337821 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:6591017..6591381 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:47321233..47321596 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:56126224..56126588 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:42845490..42845854 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:38127225..38127589 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:56927815..56928180 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:41225220..41225584 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:32675346..32675710 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:39795953..39796317 -Gossypium lobatum (D7) genome ISU_v1n/a
F01chromosomeF01:93107477..93107840 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:9597594..9597962 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CO087194CO087194Gossypium spp.sequence_feature


Sequence
>HAU0768 ID=HAU0768; Name=HAU0768; organism=Gossypium spp.; type=genetic_marker; length=268bp
GGCTATGCTGCATCCTTATTAGGTGAAACAATAACAGGGAAAGGAATTCT
AACACAGTTGAACTTGGAAACACGAATTCCAATTTATGAAGCTGAACCCC
TTCTTCTCTTCTTCATTCTTTTCACCCTCCTCGGAGCAGTCGGAGCTTTG
GGCGACCGAGGTAAGTTTGTCGACGAGCCTCCTACATGCATTGAAGGGGC
AGGAATCCCTCCTGGGAAGGGCATCAGGGGCGCATTGGGTCTCAAGGAAC
GAAGTCCATTGTTTGGAT