HAU0768, HAU0768 (genetic_marker) gossypium spp

Marker Overview
NameHAU0768
Genbank IDCO087194
TypeSSR
SpeciesGossypium spp.
Source SequenceCO087194
Source TypeEST
Repeat Motif(CTT)5
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0768_F: GGCTATGCTGCATCCTTATT
Primer 2HAU0768_R: ATCCAAACAATGGACTTCGT
Product Length268
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO087194
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01chromosomeA01:97527781..97528145 -
CM018202.1chromosomeCM018202.1:106697002..106697366 -
KI_01chromosomeKI_01:34387157..34387508 -
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:92763141..92763505 -
D10_01chromosomeD10_01:4988154..4988518 +
CM016614.1chromosomeCM016614.1:129491738..129492107 -
scaffold4545.1supercontigscaffold4545.1:53754..54118 -
scaffold2331.1supercontigscaffold2331.1:36802..37166 -
A01chromosomeA01:93566826..93567190 -
Ghir_A01chromosomeGhir_A01:111098783..111099147 -
A01chromosomeA01:111723941..111724305 -
A01chromosomeA01:109394726..109395090 -
A01chromosomeA01:106167589..106167953 -
At01chromosomeAt01:76821205..76821569 -
scaffold8298supercontigscaffold8298:139374..139738 -
Gbar_A01chromosomeGbar_A01:109138545..109138909 -
A01chromosomeA01:109051671..109052035 -
CM017610.1chromosomeCM017610.1:107733000..107733364 -
CM017636.1chromosomeCM017636.1:115179079..115179443 -
CM017688.1chromosomeCM017688.1:105226365..105226729 -
A01chromosomeA01:112951040..112951404 -
Chr01chromosomeChr01:116337458..116337821 -
Chr02chromosomeChr02:6591017..6591381 +
Chr01chromosomeChr01:47321233..47321596 -
Chr02chromosomeChr02:56126224..56126588 -
chr02chromosomechr02:42845490..42845854 -
Chr_02chromosomeChr_02:38127225..38127589 -
Chr02chromosomeChr02:56927815..56928180 -
Chr02chromosomeChr02:41225220..41225584 -
Chr02chromosomeChr02:32675346..32675710 -
Chr02chromosomeChr02:39795953..39796317 -
F01chromosomeF01:93107477..93107840 -
Chr01chromosomeChr01:9597594..9597962 +
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CO087194CO087194Gossypium spp.sequence_feature


Sequence
>HAU0768 ID=HAU0768; Name=HAU0768; organism=Gossypium spp.; type=genetic_marker; length=268bp
GGCTATGCTGCATCCTTATTAGGTGAAACAATAACAGGGAAAGGAATTCT
AACACAGTTGAACTTGGAAACACGAATTCCAATTTATGAAGCTGAACCCC
TTCTTCTCTTCTTCATTCTTTTCACCCTCCTCGGAGCAGTCGGAGCTTTG
GGCGACCGAGGTAAGTTTGTCGACGAGCCTCCTACATGCATTGAAGGGGC
AGGAATCCCTCCTGGGAAGGGCATCAGGGGCGCATTGGGTCTCAAGGAAC
GAAGTCCATTGTTTGGAT