HAU0571, HAU0571 (genetic_marker) gossypium spp

Marker Overview
NameHAU0571
Genbank IDBQ415520
TypeSSR
SpeciesGossypium spp.
Source SequenceBQ415520
Source TypeEST
Repeat Motif(TTG)5
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU0571_F: GACATTGGGAGGAATGTGAT
Primer 2HAU0571_R: TGCTACAAAGCTTTCACCAC
Product Length247
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ415520
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:39068407..39068764 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A12chromosomeA12:71596159..71596513 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:35937309..35937666 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:68956149..68956503 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:23314849..23315206 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_12chromosomeKI_12:43241429..43241792 -Gossypioides kirkii genome ISU_v3n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:32508963..32509317 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:31253498..31253858 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:97568647..97569007 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr8chromosomeDt_chr8:23204835..23205192 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr8chromosomeAt_chr8:59990550..59990904 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:35178081..35178438 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:58264036..58264390 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:38340845..38341202 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:76491217..76491571 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:37611876..37612233 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:77759432..77759786 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:38297959..38298316 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:74755242..74755596 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:36076127..36076484 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:71666712..71667066 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold798supercontigscaffold798:235390..235744 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold13581supercontigscaffold13581:101510..101867 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold13581supercontigscaffold13581:105104..105461 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:35267249..35267606 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:71293463..71293817 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:36504862..36505219 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:71073208..71073562 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:36315059..36315416 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:72458322..72458676 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:38746405..38746762 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:75261945..75262299 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:37053900..37054257 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:71287301..71287655 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:38383243..38383600 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:77725012..77725366 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:16099486..16099840 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:84523547..84523901 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:34451197..34451554 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:58603787..58604144 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:34631080..34631440 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:26602941..26603292 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:24427137..24427497 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:35813459..35813816 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:24132188..24132545 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:18996406..18996763 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:23234864..23235221 +Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:61606575..61606938 -Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:63196684..63197039 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:40378130..40378487 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr08chromosomeHAU0571:1..488 .
Chr08:34046763..34047360 +		n/a
Chr8chromosomeHAU0571:1..488 .
Chr8:38531451..38532048 -		n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BQ415520BQ415520Gossypium spp.sequence_feature


Sequence
>HAU0571 ID=HAU0571; Name=HAU0571; organism=Gossypium spp.; type=genetic_marker; length=247bp
GACATTGGGAGGAATGTGATCCATGGGAGTGATTCCGTCGAGAGTGCAAG
GAAGGAAATCGCCCTTTGGTTCCCTGAATGCCCTGTTAACTGGCAGAGCA
GCCTTCACCCTTGGATCTACGAGTAGAAATCATTTGGTAGAAGCTGTTGA
CCGTCATGGCTCTGTCCCGGTTGTTTGTTGTTGTTGTTGCCAGCCCTTTG
ATATTTATGTTACTATTATAGTTTGAAGTGGTGAAAGCTTTGTAGCA