HAU0566, HAU0566 (genetic_marker) gossypium spp

Marker Overview
NameHAU0566
Genbank IDBQ414897
TypeSSR
SpeciesGossypium spp.
Source SequenceBQ414897
Source TypeEST
Repeat Motif(TGA)5
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0566_F: TTTGCTCCCTTCTTTGCTAC
Primer 2HAU0566_R: TCAACTCTTTTCCTAGATTGACC
Product Length274
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBQ414897
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:1372404..1372677 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:1282045..1282318 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:1340778..1341051 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:1174211..1174484 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_05chromosomeKI_05:1015465..1015733 -Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:1345065..1345338 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:59269665..59269935 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:2055475..2055725 -Gossypium australe (G2) genome CRI_v1.1n/a
A05chromosomeA05:825930..826203 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:1458115..1458388 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:1382796..1383069 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:1433775..1434048 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:1585247..1585520 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt05chromosomeDt05:1147668..1147941 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold22530supercontigscaffold22530:31103..31376 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold19979supercontigscaffold19979:46617..46890 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:1295300..1295573 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:1279249..1279522 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:1415198..1415471 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:1366815..1367088 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:1298225..1298495 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:1387026..1387299 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:1271810..1272083 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:1441687..1441961 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:1285232..1285505 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:1380282..1380555 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:1479512..1479785 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:1588011..1588284 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:1220016..1220289 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:1179135..1179408 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:84598942..84599215 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:1264412..1264682 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:1130385..1130655 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:1381431..1381701 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:1278956..1279229 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09_3471830chromosomeChr09_3471830:3070..3343 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:1209428..1209699 -Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:1666668..1666938 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:1218146..1218416 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:197918161..197918430 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BQ414897BQ414897Gossypium spp.sequence_feature


Sequence
>HAU0566 ID=HAU0566; Name=HAU0566; organism=Gossypium spp.; type=genetic_marker; length=274bp
TTTGCTCCCTTCTTTGCTACACATGGTGGGCTGCTTTTTAAGATATTTTA
AGTGAAGACAAACATCGGCTACTAGTCTACCATTTCCGATACCTGTCTGT
TATTCTCTTATAATTTTCATTTTGAAGTATATTTAGGTCGTAGCACATTT
TGACTCTAGAGATCATTTCCTCTTTAAAGTCATATTGGTAGTAAAAGTTT
ACCCTTTGTAACAACGACATTGATGTTGTTCTTGATGATGATGATGATTA
TGGTCAATCTAGGAAAAGAGTTGA