HAU0480, HAU0480 (genetic_marker) gossypium spp

Marker Overview
NameHAU0480
Genbank IDBG446844
TypeSSR
SpeciesGossypium spp.
Source SequenceBG446844
Source TypeEST
Repeat Motif(TCG)5
PCR ConditionAnnealing temperature: 57.1
Primer 1HAU0480_F: AACTACGGCAAAGACTACGG
Primer 2HAU0480_R: AAAGTTCATTTGACCCCTCA
Product Length105
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBG446844
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:28993722..28994470 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A09chromosomeA09:52302475..52303221 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:27483064..27483812 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:48711387..48712133 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:22402289..22403036 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_09chromosomeKI_09:21411256..21411947 +Gossypioides kirkii genome ISU_v3n/a
tig00024850_CRI-A2_v1.0.a1chromosometig00024850_CRI-A2_v1.0.a1:296335..297081 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:21414317..21415065 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:37364353..37365102 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr6chromosomeDt_chr6:21448700..21449448 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr6chromosomeAt_chr6:38169134..38169880 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:27796599..27797347 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:47325094..47325840 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:29523180..29523928 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:52352151..52352897 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:29453624..29454372 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:54782675..54783421 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:29138570..29139318 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:54159334..54160080 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:27529453..27530201 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:50973810..50974556 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt09chromosomeDt09:29448454..29449202 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1511supercontigscaffold1511:228633..229381 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold19supercontigscaffold19:27610..28356 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold19supercontigscaffold19:24479..25228 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:28068207..28068955 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:49479517..49480263 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:30889311..30890059 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:50738614..50739360 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:28502603..28503351 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:50124753..50125499 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:29541814..29542562 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:53035383..53036129 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:29045051..29045799 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:50435002..50435748 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:30646208..30646956 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:55321020..55321766 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:53862629..53863375 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:56987987..56988733 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:27861880..27862628 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:43199695..43200444 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:27860573..27861321 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:22434405..22435153 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr06chromosomeChr06:29448620..29449368 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:20963330..20964078 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:15393140..15393866 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:18972481..18973229 +Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:32111525..32112264 -Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:44301320..44302069 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeChr09:88902299..88903048 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BG446844BG446844Gossypium spp.sequence_feature


Sequence
>HAU0480 ID=HAU0480; Name=HAU0480; organism=Gossypium spp.; type=genetic_marker; length=105bp
AACTACGGCAAAGACTACGGCAAGCTCGTCGTCATCGTCGATGTTGTTGA
CCAGAACAGAGCTCTAGTTGATGCCCCAGATATGGTGAGGGGTCAAATGA
ACTTT