HAU0472, HAU0472 (genetic_marker) gossypium spp

Marker Overview
NameHAU0472
Genbank IDBG446390
TypeSSR
SpeciesGossypium spp.
Source SequenceBG446390
Source TypeEST
Repeat Motif(CTG)6
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0472_F: CTGCTCCTACTCATCCACCT
Primer 2HAU0472_R: CAGTAGCACCCGTTTCTTTT
Product Length281
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBG446390
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:9136133..9136506 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:8524665..8525038 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:8216512..8216884 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr4chromosomeDt_chr4:28459059..28459432 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:8515730..8516103 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:8553812..8554185 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:8205837..8206210 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:8002358..8002731 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:8617718..8618091 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D08chromosomeD08:8742168..8742541 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:8771840..8772213 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:9088375..9088748 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:8615914..8616287 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:8738466..8738839 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:8219627..8220000 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:11049695..11050069 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:8499812..8500185 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:7460916..7461296 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr04chromosomeChr04:8436683..8437056 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:6829439..6829812 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:5695588..5695959 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:6770516..6770889 -Gossypium lobatum (D7) genome ISU_v1n/a
F08chromosomeF08:8879126..8879499 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeHAU0472:1..280 .
Chr04:8200167..8200540 -		n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BG446390BG446390Gossypium spp.sequence_feature


Sequence
>HAU0472 ID=HAU0472; Name=HAU0472; organism=Gossypium spp.; type=genetic_marker; length=281bp
CTGCTCCTACTCATCCACCTTACGAAGAGATGATCAAAGATGCGATCGTT
ACTTTGAAAGAGAGGACAGGTTCAAGTCAGTACGCCATTGCTAAGTTCAT
TGAAGAGAAACAGAAGAATCTTGCTGGGAATTTCAAGAAGCTACTTCTTG
ACCATTTGAAGAAGCTTGTGGCTGCTGGGAAGTTGGTTAAAGTTAAGGCT
AGGTGTGAACTAGCATCGGCTGAATCTTCGAAAACGGCTACTGCTGCTAC
TGCTGCTGCAGAAAAGAAACGGGTGCTACTG