HAU0463, HAU0463 (genetic_marker) gossypium spp

Marker Overview
NameHAU0463
Genbank IDBG445804
TypeSSR
SpeciesGossypium spp.
Source SequenceBG445804
Source TypeEST
Repeat Motif(CTTCC)4
PCR ConditionAnnealing temperature: 57.2
Primer 1HAU0463_F: TCCACCATCATCATCATCAC
Primer 2HAU0463_R: ACGTCCATCTACCTTGGTGT
Product Length254
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBG445804
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:2870533..2870782 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:3001390..3001643 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018225.1chromosomeCM018225.1:2664089..2664342 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:63194689..63194942 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_11chromosomeKI_11:2416104..2416352 -Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:121489891..121490144 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:2621143..2621391 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:3446020..3446273 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr7chromosomeDt_chr7:7486680..7486933 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:2836117..2836370 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:2575786..2576039 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:2776846..2777099 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:3003385..3003638 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:2726107..2726360 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:2891892..2892145 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:2797640..2797893 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:2882854..2883107 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:2743300..2743553 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:3031653..3031906 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold8063supercontigscaffold8063:49112..49365 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6973supercontigscaffold6973:225273..225526 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6973supercontigscaffold6973:224298..224551 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:2716605..2716858 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:2627720..2627973 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:2725727..2725980 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:3006252..3006505 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:2646216..2646469 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:3040134..3040387 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:2650031..2650284 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:3068864..3069117 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:2708376..2708629 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:3008004..3008257 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:2771599..2771852 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:3052464..3052717 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:3026895..3027148 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:2948640..2948893 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:60678171..60678424 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:3044759..3045012 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:2570072..2570325 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:2414934..2415182 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:2366144..2366397 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:2753181..2753434 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:2092230..2092478 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:2061081..2061334 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:2207818..2208071 -Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:3145232..3145480 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:2543793..2544045 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:183244258..183244511 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BG445804BG445804Gossypium spp.sequence_feature


Sequence
>HAU0463 ID=HAU0463; Name=HAU0463; organism=Gossypium spp.; type=genetic_marker; length=254bp
TCCACCATCATCATCATCACCACCACCGCCCTACTTTCCCATTCCAATTA
CTAGAGAAGAAAGAAGAAGATAACCAACCTTGTTCCTCCTCTTCTTCCCT
TCCTTTCCCTTCCCTACCGGTTTCATCTTCCTCGGGCGATCAACACACCT
CGACTCGTTCCATTTCAACCCACCAGATCTCGCCGGAAACTTCCAAGACT
CCACCGCCTAAACGTACTTCGACTAAAGACCGACACACCAAGGTAGATGG
ACGT