HAU0463, HAU0463 (genetic_marker) gossypium spp

Marker Overview
NameHAU0463
Genbank IDBG445804
TypeSSR
SpeciesGossypium spp.
Source SequenceBG445804
Source TypeEST
Repeat Motif(CTTCC)4
PCR ConditionAnnealing temperature: 57.2
Primer 1HAU0463_F: TCCACCATCATCATCATCAC
Primer 2HAU0463_R: ACGTCCATCTACCTTGGTGT
Product Length254
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBG445804
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D11chromosomeD11:2870533..2870782 -
CM018212.1chromosomeCM018212.1:3001390..3001643 +
CM018225.1chromosomeCM018225.1:2664089..2664342 -
D5_11chromosomeD5_11:63194689..63194942 +
KI_11chromosomeKI_11:2416104..2416352 -
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:121489891..121490144 +
D10_11chromosomeD10_11:2621143..2621391 -
CM016624.1chromosomeCM016624.1:3446020..3446273 -
Dt_chr7chromosomeDt_chr7:7486680..7486933 +
D11chromosomeD11:2836117..2836370 -
A11chromosomeA11:2575786..2576039 -
Ghir_D11chromosomeGhir_D11:2776846..2777099 -
Ghir_A11chromosomeGhir_A11:3003385..3003638 -
D11chromosomeD11:2726107..2726360 -
A11chromosomeA11:2891892..2892145 -
D11chromosomeD11:2797640..2797893 -
A11chromosomeA11:2882854..2883107 -
D11chromosomeD11:2743300..2743553 -
A11chromosomeA11:3031653..3031906 -
scaffold8063supercontigscaffold8063:49112..49365 +
scaffold6973supercontigscaffold6973:225273..225526 +
scaffold6973supercontigscaffold6973:224298..224551 +
Gbar_D11chromosomeGbar_D11:2716605..2716858 -
Gbar_A11chromosomeGbar_A11:2627720..2627973 -
D11chromosomeD11:2725727..2725980 -
A11chromosomeA11:3006252..3006505 -
CM017633.1chromosomeCM017633.1:2646216..2646469 -
CM017620.1chromosomeCM017620.1:3040134..3040387 -
CM017659.1chromosomeCM017659.1:2650031..2650284 -
CM017646.1chromosomeCM017646.1:3068864..3069117 -
CM017711.1chromosomeCM017711.1:2708376..2708629 -
CM017698.1chromosomeCM017698.1:3008004..3008257 -
D11chromosomeD11:2771599..2771852 -
A11chromosomeA11:3052464..3052717 -
Chr11chromosomeChr11:3026895..3027148 -
Chr11chromosomeChr11:2948640..2948893 -
Chr11chromosomeChr11:60678171..60678424 +
B_11chromosomeB_11:3044759..3045012 -
Chr07chromosomeChr07:2570072..2570325 -
chr07chromosomechr07:2414934..2415182 -
Chr_07chromosomeChr_07:2366144..2366397 -
Chr07chromosomeChr07:2753181..2753434 -
Chr07chromosomeChr07:2092230..2092478 -
Chr07chromosomeChr07:2061081..2061334 -
Chr07chromosomeChr07:2207818..2208071 -
E11chromosomeE11:3145232..3145480 -
F11chromosomeF11:2543793..2544045 -
Chr11chromosomeChr11:183244258..183244511 +
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BG445804BG445804Gossypium spp.sequence_feature


Sequence
>HAU0463 ID=HAU0463; Name=HAU0463; organism=Gossypium spp.; type=genetic_marker; length=254bp
TCCACCATCATCATCATCACCACCACCGCCCTACTTTCCCATTCCAATTA
CTAGAGAAGAAAGAAGAAGATAACCAACCTTGTTCCTCCTCTTCTTCCCT
TCCTTTCCCTTCCCTACCGGTTTCATCTTCCTCGGGCGATCAACACACCT
CGACTCGTTCCATTTCAACCCACCAGATCTCGCCGGAAACTTCCAAGACT
CCACCGCCTAAACGTACTTCGACTAAAGACCGACACACCAAGGTAGATGG
ACGT