HAU0399, HAU0399 (genetic_marker) gossypium spp

Marker Overview
NameHAU0399
Genbank IDBF278516
TypeSSR
SpeciesGossypium spp.
Source SequenceBF278516
Source TypeEST
Repeat Motif(AAGA)4
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU0399_F: TAGTGGAAGGGAGAAGTTGC
Primer 2HAU0399_R: GGTTTAATGGAAGAGGCTGA
Product Length174
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBF278516
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:338754..339011 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018209.1chromosomeCM018209.1:543853..544110 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:657131..657388 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold615.1supercontigscaffold615.1:201632..201889 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:303312..303569 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:666045..666302 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:566861..567118 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:676782..677039 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
At08chromosomeAt08:321717..321974 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At08chromosomeAt08:319800..320056 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9134supercontigscaffold9134:26835..27092 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9134supercontigscaffold9134:24918..25174 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A08chromosomeGbar_A08:557034..557291 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:540077..540334 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:561271..561528 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:573940..574197 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:588784..589041 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:663654..663911 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:593777..594034 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:667596..667853 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BF278516BF278516Gossypium spp.sequence_feature


Sequence
>HAU0399 ID=HAU0399; Name=HAU0399; organism=Gossypium spp.; type=genetic_marker; length=174bp
TAGTGGAAGGGAGAAGTTGCTTTCGTTCCTTCTGGTGGTGGTGCTGTTGC
GGGTGCCGCTCCTGCACGTGGCGGTGGTGGTGCCTGACCTGCAGCCCAAG
CCAAGAAAGAAGAGAAAGTCGAGGAAAAGGAAGAATCCCGCGATGAATTG
GGTTTCAGCCTCTTCCATTAAACC